Prupe.5G085900_v2.0.a1

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000890
Physical Location & Seq
Forward (+)
9761962 .. 9763127
1166 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G085900.1

Sequence Viewer

Length: 1125 bp
ATGGGCTGCCTCCCTTTGCATGTGGTGCAAAAAATTCATTGCATTTTTGCAGGGTTTAATCACACTGAGGCGGACTCTTGTATATGGCAGCTCACCTCCAATGGTGAATTTTCTGTGAAAACGGCTTACCTCTCCTTGTTTACTAAGGAGACCAACTATACTTGGAATTGGGATATTATTTGGAAGCTGCAGGTCCCCCCCAAGATCAAAACCTTTCTCTGGCTGTTGATTCATGCTCCCAACTCCAACTGCCCTTGCTGCAACGGCTCCATGGAGTCCTTGGATCATCTCTTTCGCAGGTGCAGTCATGCGGCTAAAATGTGGAACTCCATTGGCATTCCCAATCAAGTTGCTCACTCCTTCTCTATGGATTTTAAGGACTGGCTCTTCACCAATATTAAAGCTAGTTTCAGCTGCATGCAGGGTATCCCTTGGTCCTCCCTGTTTTTGGCTGCCCTATGGTTCTGCTGGAAATGGCGCTGTAAGAAAGTTTTTTATCTCAACTTCTCTCCTCCTCCCTGGCCCCACATTCCGATCATCCATTTCTCCCGTGAATGGCTGGTGGCTAACAGATCCAGGAACTCCAAGCTTCCTAAACATGTTCTTAAACTTCACTGGTCTCCTCCCTGTGCTGGCTGGTTTAAGATTAACGTGGATGGTAGTTGTATGGGTGAGTTGGGCGCTATTAGTGCTGGTGGCATCATAAGGACCGATGCTGGTGTTTGGGTTAAGGGGTTTGTTACGAAGCTGGGATGTGGCAGTATCCTAGAAGCGGAGCTTTGGGGAGTCTTCAGAGGCTTGCTCCTCACGTGGAACGAAGGTATCCGAAGAATTCAGATGGAATGTGACTCTCTCACTGCTGTCTCTCTTATTAATGGAGAAACTGGAACTAACCATCCCCTTTCTAGCATCATCCATTGCTGCAAAGACTTGCTCTTGCGTGACTGGGAGTGCACCATCTATCACATCTATAGAGAGCAAAACTCTGCTGCGGACCATATGGCTCACTTGGGTCAAAATTCCAGTTTGGGTTTTCATGTTATTGATCTCCCTCCTCCTTCTATTGTTTGCCTCTTGGCTAATGACTCTTCTAGGGGAACCACTGCGAGGCTTGTCCCAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

375

Amino Acids

42.34

Weight (kDa)

8.6

Isoelectric Point (pI)

38.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 288
Acc36I ACCTGC 2 cut(s) 181, 288
AciI CCGC 4 cut(s) 71, 311, 773, 992
AclWI GGATC 2 cut(s) 291, 567
AcsI RAATTY 4 cut(s) 33, 107, 831, 1018
AcuI CTGAAG 1 cut(s) 775
AcvI CACGTG 1 cut(s) 810
AfiI CCNNNNNNNGG 6 cut(s) 219, 448, 555, 632, 772, 1107
AflIII ACRYGT 1 cut(s) 598
AjnI CCWGG 2 cut(s) 518, 575
AloI GAACNNNNNNTCC 2 cut(s) 880, 912
AluBI AGCT 7 cut(s) 91, 187, 404, 414, 589, 748, 778
AluI AGCT 7 cut(s) 91, 187, 404, 414, 589, 748, 778
Alw21I GWGCWC 1 cut(s) 956
Alw26I GTCTC 3 cut(s) 143, 624, 868
Alw44I GTGCAC 1 cut(s) 952
AlwI GGATC 2 cut(s) 291, 567
AoxI GGCC 1 cut(s) 521
ApaLI GTGCAC 1 cut(s) 952
ApeKI GCWGC 8 cut(s) 6, 88, 187, 258, 414, 452, 921, 989
ApoI RAATTY 4 cut(s) 33, 107, 831, 1018
AseI ATTAAT 1 cut(s) 873
AspLEI GCGC 2 cut(s) 480, 683
AspS9I GGNCC 5 cut(s) 193, 435, 522, 708, 994
AsuHPI GGTGA 4 cut(s) 85, 116, 382, 683
AvaII GGWCC 4 cut(s) 193, 435, 708, 994
BaeGI GKGCMC 1 cut(s) 956
BaeI ACNNNNGTAYC 2 cut(s) 805, 838
BbrPI CACGTG 1 cut(s) 810
BbsI GAAGAC 1 cut(s) 781
Bbv12I GWGCWC 1 cut(s) 956
BbvI GCAGC 7 cut(s) 100, 174, 245, 401, 439, 908, 976
BccI CCATC 4 cut(s) 650, 832, 903, 965
BceAI ACGGC 2 cut(s) 138, 280
BciT130I CCWGG 2 cut(s) 520, 577
BciVI GTATCC 3 cut(s) 437, 773, 833
BcoDI GTCTC 3 cut(s) 143, 624, 868
BfaI CTAG 4 cut(s) 405, 767, 906, 1092
BfmI CTRYAG 2 cut(s) 188, 970
BfoI RGCGCY 2 cut(s) 481, 684
BfuAI ACCTGC 2 cut(s) 181, 288
BfuI GTATCC 3 cut(s) 437, 773, 833
BisI GCNGC 9 cut(s) 7, 89, 188, 259, 312, 415, 453, 922, 990
BlsI GCNGC 9 cut(s) 8, 90, 189, 260, 313, 416, 454, 923, 991
Bme1390I CCNGG 2 cut(s) 520, 577
Bme18I GGWCC 4 cut(s) 193, 435, 708, 994
BmgT120I GGNCC 5 cut(s) 193, 435, 522, 708, 994
BmiI GGNNCC 4 cut(s) 195, 268, 524, 1099
BmrFI CCNGG 2 cut(s) 520, 577
BmrI ACTGGG 2 cut(s) 955, 1112
BmsI GCATC 3 cut(s) 703, 708, 918
BmuI ACTGGG 2 cut(s) 955, 1112
BpiI GAAGAC 1 cut(s) 781
BplI GAGNNNNNCTC 6 cut(s) 59, 91, 786, 818, 968, 1000
BsaAI YACGTR 1 cut(s) 810
BsaI GGTCTC 2 cut(s) 143, 624
BsaJI CCNNGG 4 cut(s) 270, 279, 431, 518
Bsc4I CCNNNNNNNGG 6 cut(s) 219, 448, 555, 632, 772, 1107
Bse1I ACTGG 6 cut(s) 386, 620, 889, 950, 1023, 1118
Bse3DI GCAATG 2 cut(s) 37, 916
BseBI CCWGG 2 cut(s) 520, 577
BseDI CCNNGG 4 cut(s) 270, 279, 431, 518
BseGI GGATG 5 cut(s) 537, 661, 758, 895, 912
BseLI CCNNNNNNNGG 6 cut(s) 219, 448, 555, 632, 772, 1107
BseMI GCAATG 2 cut(s) 37, 916
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 6 cut(s) 386, 620, 889, 950, 1023, 1118
BseRI GAGGAG 5 cut(s) 501, 504, 612, 794, 1044
BseSI GKGCMC 1 cut(s) 956
BseXI GCAGC 7 cut(s) 100, 174, 245, 401, 439, 908, 976
BseYI CCCAGC 1 cut(s) 748
BsgI GTGCAG 1 cut(s) 322
BshFI GGCC 1 cut(s) 523
BsiHKAI GWGCWC 1 cut(s) 956
BslFI GGGAC 2 cut(s) 179, 1100
BslI CCNNNNNNNGG 6 cut(s) 219, 448, 555, 632, 772, 1107
BsmAI GTCTC 3 cut(s) 143, 624, 868
BsmFI GGGAC 2 cut(s) 179, 1100
BsmI GAATGC 1 cut(s) 336
BsnI GGCC 1 cut(s) 523
Bso31I GGTCTC 2 cut(s) 143, 624
Bsp1286I GDGCHC 1 cut(s) 956
Bsp143I GATC 5 cut(s) 204, 283, 534, 572, 1045
Bsp19I CCATGG 1 cut(s) 270
BspACI CCGC 4 cut(s) 71, 311, 773, 992
BspANI GGCC 1 cut(s) 523
BspCNI CTCAG 1 cut(s) 58
BspLI GGNNCC 4 cut(s) 195, 268, 524, 1099
BspMAI CTGCAG 1 cut(s) 192
BspMI ACCTGC 2 cut(s) 181, 288
BspPI GGATC 2 cut(s) 291, 567
BspQI GCTCTTC 1 cut(s) 392
BspTNI GGTCTC 2 cut(s) 143, 624
BsrDI GCAATG 2 cut(s) 37, 916
BsrI ACTGG 6 cut(s) 386, 620, 889, 950, 1023, 1118
BssECI CCNNGG 4 cut(s) 270, 279, 431, 518
BssMI GATC 5 cut(s) 204, 283, 534, 572, 1045
BssT1I CCWWGG 3 cut(s) 270, 279, 431
Bst2UI CCWGG 2 cut(s) 520, 577
Bst6I CTCTTC 2 cut(s) 392, 1093
BstAPI GCANNNNNTGC 1 cut(s) 25
BstBAI YACGTR 1 cut(s) 810
BstC8I GCNNGC 3 cut(s) 419, 634, 800
BstDEI CTNAG 2 cut(s) 66, 144
BstDSI CCRYGG 1 cut(s) 270
BstF5I GGATG 5 cut(s) 537, 661, 758, 895, 912
BstH2I RGCGCY 2 cut(s) 481, 684
BstHHI GCGC 2 cut(s) 480, 683
BstKTI GATC 5 cut(s) 207, 286, 537, 575, 1048
BstMAI GTCTC 3 cut(s) 143, 624, 868
BstMBI GATC 5 cut(s) 204, 283, 534, 572, 1045
BstMWI GCNNNNNNNGC 4 cut(s) 25, 258, 264, 689
BstNI CCWGG 2 cut(s) 520, 577
BstNSI RCATGY 3 cut(s) 23, 421, 602
BstSCI CCNGG 2 cut(s) 518, 575
BstSFI CTRYAG 2 cut(s) 188, 970
BstSLI GKGCMC 1 cut(s) 956
BstV1I GCAGC 7 cut(s) 100, 174, 245, 401, 439, 908, 976
BstV2I GAAGAC 1 cut(s) 781
BstX2I RGATCY 1 cut(s) 572
BstYI RGATCY 1 cut(s) 572
BsuI GTATCC 3 cut(s) 437, 773, 833
BsuRI GGCC 1 cut(s) 523
BtgI CCRYGG 1 cut(s) 270
BtsCI GGATG 5 cut(s) 537, 661, 758, 895, 912
BtsI GCAGTG 2 cut(s) 855, 1101
BtsIMutI CAGTG 5 cut(s) 63, 613, 855, 1101, 1125
BveI ACCTGC 2 cut(s) 181, 288
Cac8I GCNNGC 3 cut(s) 419, 634, 800
CfoI GCGC 2 cut(s) 480, 683
Cfr13I GGNCC 5 cut(s) 193, 435, 522, 708, 994
CviAII CATG 7 cut(s) 20, 233, 271, 308, 418, 599, 1037
DdeI CTNAG 2 cut(s) 66, 144
DpnI GATC 5 cut(s) 206, 285, 536, 574, 1047
DpnII GATC 5 cut(s) 204, 283, 534, 572, 1045
Eam1104I CTCTTC 2 cut(s) 392, 1093
EarI CTCTTC 2 cut(s) 392, 1093
EciI GGCGGA 1 cut(s) 86
Eco130I CCWWGG 3 cut(s) 270, 279, 431
Eco31I GGTCTC 2 cut(s) 143, 624
Eco47I GGWCC 4 cut(s) 193, 435, 708, 994
Eco57I CTGAAG 1 cut(s) 775
Eco72I CACGTG 1 cut(s) 810
EcoO109I RGGNCCY 1 cut(s) 193
EcoRI GAATTC 1 cut(s) 831
EcoRII CCWGG 2 cut(s) 518, 575
EcoT14I CCWWGG 3 cut(s) 270, 279, 431
ErhI CCWWGG 3 cut(s) 270, 279, 431
FaeI CATG 7 cut(s) 23, 236, 274, 311, 421, 602, 1040
FalI AAGNNNNNCTT 2 cut(s) 762, 794
FaqI GGGAC 2 cut(s) 179, 1100
FatI CATG 7 cut(s) 19, 232, 270, 307, 417, 598, 1036
FauNDI CATATG 1 cut(s) 999
Fnu4HI GCNGC 9 cut(s) 7, 89, 188, 259, 312, 415, 453, 922, 990
FokI GGATG 5 cut(s) 524, 668, 765, 882, 899
Fsp4HI GCNGC 9 cut(s) 7, 89, 188, 259, 312, 415, 453, 922, 990
FspBI CTAG 4 cut(s) 405, 767, 906, 1092
GlaI GCGC 2 cut(s) 479, 682
GluI GCNGC 9 cut(s) 7, 89, 188, 259, 312, 415, 453, 922, 990
GsaI CCCAGC 1 cut(s) 752
HaeII RGCGCY 2 cut(s) 481, 684
HaeIII GGCC 1 cut(s) 523
HhaI GCGC 2 cut(s) 480, 683
Hin1II CATG 7 cut(s) 23, 236, 274, 311, 421, 602, 1040
Hin6I GCGC 2 cut(s) 478, 681
HinP1I GCGC 2 cut(s) 478, 681
HindIII AAGCTT 1 cut(s) 587
HinfI GANTC 6 cut(s) 74, 229, 275, 786, 848, 1085
HphI GGTGA 4 cut(s) 85, 116, 382, 683
Hpy166II GTNNAC 2 cut(s) 141, 954
Hpy188I TCNGA 4 cut(s) 534, 794, 827, 837
Hpy8I GTNNAC 2 cut(s) 141, 954
HpyAV CCTTC 3 cut(s) 370, 812, 1068
HpyCH4IV ACGT 2 cut(s) 651, 809
HpyF10VI GCNNNNNNNGC 4 cut(s) 25, 258, 264, 689
HpyF3I CTNAG 2 cut(s) 66, 144
HpySE526I ACGT 2 cut(s) 651, 809
Hsp92II CATG 7 cut(s) 23, 236, 274, 311, 421, 602, 1040
HspAI GCGC 2 cut(s) 478, 681
Kzo9I GATC 5 cut(s) 204, 283, 534, 572, 1045
LguI GCTCTTC 1 cut(s) 392
LmnI GCTCC 4 cut(s) 241, 272, 775, 807
Lsp1109I GCAGC 7 cut(s) 100, 174, 245, 401, 439, 908, 976
LweI GCATC 3 cut(s) 703, 708, 918
MaeI CTAG 4 cut(s) 405, 767, 906, 1092
MaeII ACGT 2 cut(s) 651, 809
MaeIII GTNAC 3 cut(s) 739, 845, 941
MalI GATC 5 cut(s) 206, 285, 536, 574, 1047
MboI GATC 5 cut(s) 204, 283, 534, 572, 1045
MboII GAAGA 4 cut(s) 379, 781, 840, 1080
MflI RGATCY 1 cut(s) 572
MhlI GDGCHC 1 cut(s) 956
MluCI AATT 5 cut(s) 33, 107, 166, 831, 1018
MlyI GAGTC 5 cut(s) 68, 284, 795, 842, 1079
MmeI TCCRAC 1 cut(s) 270
MseI TTAA 8 cut(s) 57, 375, 399, 606, 642, 648, 729, 873
MspA1I CMGCKG 1 cut(s) 414
MspR9I CCNGG 2 cut(s) 520, 577
Mva1269I GAATGC 1 cut(s) 336
MvaI CCWGG 2 cut(s) 520, 577
MwoI GCNNNNNNNGC 4 cut(s) 25, 258, 264, 689
NcoI CCATGG 1 cut(s) 270
NdeI CATATG 1 cut(s) 999
NdeII GATC 5 cut(s) 204, 283, 534, 572, 1045
NlaIII CATG 7 cut(s) 23, 236, 274, 311, 421, 602, 1040
NlaIV GGNNCC 4 cut(s) 195, 268, 524, 1099
NmuCI GTSAC 2 cut(s) 845, 941
NspI RCATGY 3 cut(s) 23, 421, 602
PaeI GCATGC 1 cut(s) 421
PaqCI CACCTGC 1 cut(s) 288
PciI ACATGT 1 cut(s) 598
PciSI GCTCTTC 1 cut(s) 392
PctI GAATGC 1 cut(s) 336
PfeI GAWTC 1 cut(s) 229
PfoI TCCNGGA 1 cut(s) 575
PkrI GCNGC 9 cut(s) 8, 90, 189, 260, 313, 416, 454, 923, 991
PleI GAGTC 5 cut(s) 68, 283, 794, 842, 1079
PmaCI CACGTG 1 cut(s) 810
PmlI CACGTG 1 cut(s) 810
PpsI GAGTC 5 cut(s) 68, 283, 794, 842, 1079
Ppu21I YACGTR 1 cut(s) 810
PpuMI RGGWCCY 1 cut(s) 193
PscI ACATGT 1 cut(s) 598
PshBI ATTAAT 1 cut(s) 873
Psp5II RGGWCCY 1 cut(s) 193
Psp6I CCWGG 2 cut(s) 518, 575
PspCI CACGTG 1 cut(s) 810
PspFI CCCAGC 1 cut(s) 748
PspGI CCWGG 2 cut(s) 518, 575
PspN4I GGNNCC 4 cut(s) 195, 268, 524, 1099
PspPI GGNCC 5 cut(s) 193, 435, 522, 708, 994
PspPPI RGGWCCY 1 cut(s) 193
PstI CTGCAG 1 cut(s) 192
PsuI RGATCY 1 cut(s) 572
PvuII CAGCTG 1 cut(s) 414
SapI GCTCTTC 1 cut(s) 392
SaqAI TTAA 8 cut(s) 57, 375, 399, 606, 642, 648, 729, 873
SatI GCNGC 9 cut(s) 7, 89, 188, 259, 312, 415, 453, 922, 990
Sau3AI GATC 5 cut(s) 204, 283, 534, 572, 1045
Sau96I GGNCC 5 cut(s) 193, 435, 522, 708, 994
SchI GAGTC 5 cut(s) 68, 284, 795, 842, 1079
ScrFI CCNGG 2 cut(s) 520, 577
SduI GDGCHC 1 cut(s) 956
SfaNI GCATC 3 cut(s) 703, 708, 918
SfcI CTRYAG 2 cut(s) 188, 970
SinI GGWCC 4 cut(s) 193, 435, 708, 994
SphI GCATGC 1 cut(s) 421
Sse9I AATT 5 cut(s) 33, 107, 166, 831, 1018
SsiI CCGC 4 cut(s) 71, 311, 773, 992
SspI AATATT 1 cut(s) 397
SspMI CTAG 4 cut(s) 405, 767, 906, 1092
StyD4I CCNGG 2 cut(s) 518, 575
StyI CCWWGG 3 cut(s) 270, 279, 431
TaiI ACGT 2 cut(s) 654, 812
TaqII GACCGA 1 cut(s) 725
TasI AATT 5 cut(s) 33, 107, 166, 831, 1018
TauI GCSGC 1 cut(s) 314
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 8 cut(s) 57, 375, 399, 606, 642, 648, 729, 873
Tru9I TTAA 8 cut(s) 57, 375, 399, 606, 642, 648, 729, 873
TscAI CASTG 5 cut(s) 70, 620, 862, 1108, 1125
TseFI GTSAC 2 cut(s) 845, 941
TseI GCWGC 8 cut(s) 6, 88, 187, 258, 414, 452, 921, 989
Tsp45I GTSAC 2 cut(s) 845, 941
TspDTI ATGAA 3 cut(s) 26, 221, 1025
TspRI CASTG 5 cut(s) 70, 620, 862, 1108, 1125
VneI GTGCAC 1 cut(s) 952
VpaK11BI GGWCC 4 cut(s) 193, 435, 708, 994
VspI ATTAAT 1 cut(s) 873
XapI RAATTY 4 cut(s) 33, 107, 831, 1018
XceI RCATGY 3 cut(s) 23, 421, 602
XcmI CCANNNNNNNNNTGG 1 cut(s) 277
XspI CTAG 4 cut(s) 405, 767, 906, 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.