pycom420g00480

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_420
OG0000890
Physical Location & Seq
Forward (+)
564803 .. 565663
861 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom420g00480.1

Sequence Viewer

Length: 861 bp
ATGCTTGAATGGACTGTTGAGGATTTCCTTACTGATGATGGTTGGAATGTAGATTTGTTATATTCCTGCCTTCCTCCTGATATTGTGGAACATATTTTCAGTTTACATGTTGGAATTGCGAATCATAGGGATGATAAGGTAATTTGGAGCCTCACCAATGCTGGAACCTTCTCCGTGAAAACTGCTTATCTCTCTCTATTTGGCGATGATGATATCATTCCTTGGAAATGGAATTTCATTTGGAAACTCAAGCTCCCACCCAAATTAGTGACTTTTCTTTGGACTATTGGTCATGGGAAAATTCTCACCAATGTGCAGAGAGCTAGAAGAGGTTTTACTAATAACCCGTGTTGTCCAATCTGCCCTAATATTGAGGAATCAATGGATCATATTTTCAGGTCTTGTAGGCATTCCCCTTCCTTTTGGAATGGTGTTGGAATCCCTTCTGAAGTTGCCCATTCCTTTGCTCTTGATTTCCAGAGTTGGATGGCCATAAACCTTAGGACACACTGTTCTACCATTCATGGTTTACCCTGGAATCTAATCTTTGCTTCAACTCTCTGGTATTGCTGGAAAGGGAGGAACAATCTTGTCTTCAATGATGGTCAACAACTGCCTGTCTCACCCCAGAAGTTCATTTTTCAATTTGCAAGGGATTGGTATAATGCCAACAAGTGTTCTTCTAGTAAGCCTCCTAGACAAATCATCTCAATCCATTGGATCCACCCGCCAATTGGTAGATATAAAATCAATACAGATGGGAGTTGTAAGGACCCATTTAGGCACATAAGTGCTGGAGGTTTGATTCGCAATTCTGAAGGGGATTGGATTAAGGGATTTGCTACTAATTTGGGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

287

Amino Acids

32.9

Weight (kDa)

8.56

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 57 - 142 1.9e-19 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 728
AclWI GGATC 3 cut(s) 393, 715, 728
AcoI YGGCCR 1 cut(s) 489
AcsI RAATTY 2 cut(s) 232, 300
AcuI CTGAAG 2 cut(s) 468, 837
AfiI CCNNNNNNNGG 1 cut(s) 734
AflIII ACRYGT 1 cut(s) 106
AgsI TTSAA 4 cut(s) 8, 555, 598, 644
AhdI GACNNNNNGTC 1 cut(s) 288
AjnI CCWGG 1 cut(s) 533
AleI CACNNNNGTG 2 cut(s) 311, 789
AloI GAACNNNNNNTCC 2 cut(s) 496, 528
AluBI AGCT 2 cut(s) 253, 323
AluI AGCT 2 cut(s) 253, 323
Alw26I GTCTC 1 cut(s) 625
AlwI GGATC 3 cut(s) 393, 715, 728
AoxI GGCC 1 cut(s) 489
ApoI RAATTY 2 cut(s) 232, 300
Asp700I GAANNNNTTC 1 cut(s) 442
AspS9I GGNCC 1 cut(s) 772
AsuHPI GGTGA 3 cut(s) 145, 298, 615
AvaII GGWCC 1 cut(s) 772
AxyI CCTNAGG 1 cut(s) 500
BalI TGGCCA 1 cut(s) 491
BamHI GGATCC 1 cut(s) 720
BarI GAAGNNNNNNTAC 2 cut(s) 319, 351
BbsI GAAGAC 1 cut(s) 586
BccI CCATC 4 cut(s) 32, 481, 596, 752
BciT130I CCWGG 1 cut(s) 535
BcoDI GTCTC 1 cut(s) 625
BfaI CTAG 3 cut(s) 324, 684, 696
Bme1390I CCNGG 1 cut(s) 535
Bme18I GGWCC 1 cut(s) 772
BmeRI GACNNNNNGTC 1 cut(s) 288
BmgT120I GGNCC 1 cut(s) 772
BmiI GGNNCC 4 cut(s) 149, 166, 722, 774
BmrFI CCNGG 1 cut(s) 535
BpiI GAAGAC 1 cut(s) 586
BpmI CTGGAG 1 cut(s) 816
BpuEI CTTGAG 1 cut(s) 233
BsaJI CCNNGG 2 cut(s) 221, 533
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bsc4I CCNNNNNNNGG 1 cut(s) 734
Bse21I CCTNAGG 1 cut(s) 500
BseBI CCWGG 1 cut(s) 535
BseDI CCNNGG 2 cut(s) 221, 533
BseGI GGATG 2 cut(s) 136, 492
BseLI CCNNNNNNNGG 1 cut(s) 734
BsgI GTGCAG 1 cut(s) 335
BshFI GGCC 1 cut(s) 491
BslI CCNNNNNNNGG 1 cut(s) 734
BsmAI GTCTC 1 cut(s) 625
BsmI GAATGC 1 cut(s) 409
BsnI GGCC 1 cut(s) 491
Bsp143I GATC 2 cut(s) 385, 720
BspACI CCGC 1 cut(s) 728
BspANI GGCC 1 cut(s) 491
BspLI GGNNCC 4 cut(s) 149, 166, 722, 774
BspPI GGATC 3 cut(s) 393, 715, 728
BssECI CCNNGG 2 cut(s) 221, 533
BssMI GATC 2 cut(s) 385, 720
BssT1I CCWWGG 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 535
Bst4CI ACNGT 2 cut(s) 16, 512
Bst6I CTCTTC 1 cut(s) 322
BstDEI CTNAG 1 cut(s) 500
BstF5I GGATG 2 cut(s) 136, 492
BstKTI GATC 2 cut(s) 388, 723
BstMAI GTCTC 1 cut(s) 625
BstMBI GATC 2 cut(s) 385, 720
BstNI CCWGG 1 cut(s) 535
BstNSI RCATGY 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 533
BstV2I GAAGAC 1 cut(s) 586
BstX2I RGATCY 1 cut(s) 720
BstYI RGATCY 1 cut(s) 720
Bsu36I CCTNAGG 1 cut(s) 500
BsuRI GGCC 1 cut(s) 491
BtgZI GCGATG 1 cut(s) 219
BtsCI GGATG 2 cut(s) 136, 492
BtsIMutI CAGTG 1 cut(s) 508
Cfr13I GGNCC 1 cut(s) 772
CviAII CATG 3 cut(s) 107, 293, 524
CviJI RGCY 5 cut(s) 150, 253, 323, 491, 691
CviKI_1 RGCY 5 cut(s) 150, 253, 323, 491, 691
DdeI CTNAG 1 cut(s) 500
DpnI GATC 2 cut(s) 387, 722
DpnII GATC 2 cut(s) 385, 720
DriI GACNNNNNGTC 1 cut(s) 288
EaeI YGGCCR 1 cut(s) 489
Eam1104I CTCTTC 1 cut(s) 322
Eam1105I GACNNNNNGTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 221
Eco32I GATATC 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 772
Eco57I CTGAAG 2 cut(s) 468, 837
Eco81I CCTNAGG 1 cut(s) 500
EcoO109I RGGNCCY 1 cut(s) 772
EcoRII CCWGG 1 cut(s) 533
EcoRV GATATC 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 3 cut(s) 110, 296, 527
FatI CATG 3 cut(s) 106, 292, 523
FauI CCCGC 1 cut(s) 735
FokI GGATG 2 cut(s) 143, 499
FspBI CTAG 3 cut(s) 324, 684, 696
GsuI CTGGAG 1 cut(s) 816
HaeIII GGCC 1 cut(s) 491
Hin1II CATG 3 cut(s) 110, 296, 527
HincII GTYRAC 1 cut(s) 608
HindII GTYRAC 1 cut(s) 608
HinfI GANTC 5 cut(s) 121, 377, 438, 538, 805
HphI GGTGA 3 cut(s) 145, 298, 615
Hpy166II GTNNAC 3 cut(s) 104, 530, 608
Hpy188I TCNGA 2 cut(s) 448, 817
Hpy188III TCNNGA 3 cut(s) 77, 470, 478
Hpy8I GTNNAC 3 cut(s) 104, 530, 608
HpyAV CCTTC 5 cut(s) 80, 178, 426, 453, 812
HpyCH4III ACNGT 2 cut(s) 16, 512
HpyCH4V TGCA 2 cut(s) 316, 650
HpyF3I CTNAG 1 cut(s) 500
Hsp92II CATG 3 cut(s) 110, 296, 527
Kzo9I GATC 2 cut(s) 385, 720
LmnI GCTCC 2 cut(s) 147, 258
MaeI CTAG 3 cut(s) 324, 684, 696
MaeIII GTNAC 1 cut(s) 268
MalI GATC 2 cut(s) 387, 722
MboI GATC 2 cut(s) 385, 720
MboII GAAGA 3 cut(s) 339, 586, 672
MfeI CAATTG 1 cut(s) 732
MflI RGATCY 1 cut(s) 720
MlsI TGGCCA 1 cut(s) 491
MluCI AATT 9 cut(s) 114, 141, 232, 263, 300, 644, 732, 811, 847
MluNI TGGCCA 1 cut(s) 491
MmeI TCCRAC 4 cut(s) 23, 91, 415, 464
MnlI CCTC 8 cut(s) 13, 84, 161, 323, 367, 573, 702, 791
Mox20I TGGCCA 1 cut(s) 491
MroXI GAANNNNTTC 1 cut(s) 442
MscI TGGCCA 1 cut(s) 491
MseI TTAA 1 cut(s) 831
MslI CAYNNNNRTG 3 cut(s) 129, 311, 789
Msp20I TGGCCA 1 cut(s) 491
MspR9I CCNGG 1 cut(s) 535
MunI CAATTG 1 cut(s) 732
Mva1269I GAATGC 1 cut(s) 409
MvaI CCWGG 1 cut(s) 535
NdeII GATC 2 cut(s) 385, 720
NlaIII CATG 3 cut(s) 110, 296, 527
NlaIV GGNNCC 4 cut(s) 149, 166, 722, 774
NmuCI GTSAC 1 cut(s) 268
NspI RCATGY 1 cut(s) 110
OliI CACNNNNGTG 2 cut(s) 311, 789
PciI ACATGT 1 cut(s) 106
PctI GAATGC 1 cut(s) 409
PdmI GAANNNNTTC 1 cut(s) 442
PfeI GAWTC 5 cut(s) 121, 377, 438, 538, 805
PpuMI RGGWCCY 1 cut(s) 772
PscI ACATGT 1 cut(s) 106
Psp5II RGGWCCY 1 cut(s) 772
Psp6I CCWGG 1 cut(s) 533
PspGI CCWGG 1 cut(s) 533
PspN4I GGNNCC 4 cut(s) 149, 166, 722, 774
PspPI GGNCC 1 cut(s) 772
PspPPI RGGWCCY 1 cut(s) 772
PsuI RGATCY 1 cut(s) 720
RseI CAYNNNNRTG 3 cut(s) 129, 311, 789
SaqAI TTAA 1 cut(s) 831
Sau3AI GATC 2 cut(s) 385, 720
Sau96I GGNCC 1 cut(s) 772
ScrFI CCNGG 1 cut(s) 535
SetI ASST 8 cut(s) 141, 170, 255, 325, 334, 401, 501, 802
SinI GGWCC 1 cut(s) 772
SmiMI CAYNNNNRTG 3 cut(s) 129, 311, 789
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 9 cut(s) 114, 141, 232, 263, 300, 644, 732, 811, 847
SsiI CCGC 1 cut(s) 728
SspI AATATT 1 cut(s) 370
SspMI CTAG 3 cut(s) 324, 684, 696
StyD4I CCNGG 1 cut(s) 533
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 2 cut(s) 16, 512
TasI AATT 9 cut(s) 114, 141, 232, 263, 300, 644, 732, 811, 847
TfiI GAWTC 5 cut(s) 121, 377, 438, 538, 805
Tru1I TTAA 1 cut(s) 831
Tru9I TTAA 1 cut(s) 831
TscAI CASTG 1 cut(s) 515
TseFI GTSAC 1 cut(s) 268
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 3 cut(s) 226, 512, 625
TspGWI ACGGA 1 cut(s) 163
TspRI CASTG 1 cut(s) 515
VpaK11BI GGWCC 1 cut(s) 772
XapI RAATTY 2 cut(s) 232, 300
XceI RCATGY 1 cut(s) 110
XcmI CCANNNNNNNNNTGG 1 cut(s) 731
XmnI GAANNNNTTC 1 cut(s) 442
XspI CTAG 3 cut(s) 324, 684, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.