RchiOBHm_Chr6g0272021

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000890
Physical Location & Seq
Forward (+)
32092057 .. 32092479
423 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24401

Sequence Viewer

Length: 264 bp
ATGGTAAAGAATGGAGTGGATGAAGTGCATCCTCTAAAGACCATCCTCAATTGTTGCTCATTCTTGCAGCAAAAGTTCCTGAGCTTTGATATTAGACACACCTATAGAGAAGTGAATGCAGTTGCAGATATCCTATCCAAGGATGGGTTGCAGGCTGAAGCTGGGGTGCATGTCATGTTGCATCCTCCTCCACAAGTCATTAACTCTCTTCTTGATGACTTGTGTGAATTTCCTAGAGTTAGGATTGTGAATTCCGAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

87

Amino Acids

9.81

Weight (kDa)

5.69

Isoelectric Point (pI)

26.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 227, 250
AcuI CTGAAG 1 cut(s) 177
AfiI CCNNNNNNNGG 2 cut(s) 139, 144
AluBI AGCT 2 cut(s) 84, 161
AluI AGCT 2 cut(s) 84, 161
ApeKI GCWGC 1 cut(s) 67
ApoI RAATTY 2 cut(s) 227, 250
BbvI GCAGC 1 cut(s) 79
BccI CCATC 2 cut(s) 50, 137
BfaI CTAG 1 cut(s) 234
BfmI CTRYAG 1 cut(s) 103
BisI GCNGC 1 cut(s) 68
BlsI GCNGC 1 cut(s) 69
BmsI GCATC 2 cut(s) 37, 190
Bpu10I CCTNAGC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 138
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 144
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 5 cut(s) 25, 28, 42, 148, 181
BseLI CCNNNNNNNGG 2 cut(s) 139, 144
BseMII CTCAG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 177
BseXI GCAGC 1 cut(s) 79
BseYI CCCAGC 1 cut(s) 161
BslI CCNNNNNNNGG 2 cut(s) 139, 144
BsmI GAATGC 1 cut(s) 121
BspCNI CTCAG 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 138
Bst6I CTCTTC 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 80
BstENI CCTNNNNNAGG 1 cut(s) 137
BstF5I GGATG 5 cut(s) 25, 28, 42, 148, 181
BstNSI RCATGY 1 cut(s) 173
BstSFI CTRYAG 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 79
BtsCI GGATG 5 cut(s) 25, 28, 42, 148, 181
Cac8I GCNNGC 1 cut(s) 153
CviAII CATG 2 cut(s) 170, 175
CviJI RGCY 3 cut(s) 84, 155, 161
CviKI_1 RGCY 3 cut(s) 84, 155, 161
DdeI CTNAG 1 cut(s) 80
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 138
Eco32I GATATC 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 177
EcoNI CCTNNNNNAGG 1 cut(s) 137
EcoRI GAATTC 1 cut(s) 250
EcoRV GATATC 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 2 cut(s) 173, 178
FaiI YATR 3 cut(s) 105, 171, 176
FatI CATG 2 cut(s) 169, 174
Fnu4HI GCNGC 1 cut(s) 68
FokI GGATG 5 cut(s) 15, 29, 32, 155, 168
Fsp4HI GCNGC 1 cut(s) 68
FspBI CTAG 1 cut(s) 234
GluI GCNGC 1 cut(s) 68
GsaI CCCAGC 1 cut(s) 165
Hin1II CATG 2 cut(s) 173, 178
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 2 cut(s) 79, 212
HpyCH4V TGCA 7 cut(s) 28, 67, 119, 125, 151, 169, 181
HpyF3I CTNAG 1 cut(s) 80
Hsp92II CATG 2 cut(s) 173, 178
LpnPI CCDG 3 cut(s) 92, 137, 147
Lsp1109I GCAGC 1 cut(s) 79
LweI GCATC 2 cut(s) 37, 190
MaeI CTAG 1 cut(s) 234
MboII GAAGA 1 cut(s) 200
MfeI CAATTG 1 cut(s) 49
MluCI AATT 3 cut(s) 49, 227, 250
MnlI CCTC 4 cut(s) 42, 56, 195, 198
MseI TTAA 1 cut(s) 201
MunI CAATTG 1 cut(s) 49
Mva1269I GAATGC 1 cut(s) 121
NlaIII CATG 2 cut(s) 173, 178
NspI RCATGY 1 cut(s) 173
PctI GAATGC 1 cut(s) 121
PkrI GCNGC 1 cut(s) 69
PspFI CCCAGC 1 cut(s) 161
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 1 cut(s) 68
SetI ASST 3 cut(s) 86, 104, 163
SfaNI GCATC 2 cut(s) 37, 190
SfcI CTRYAG 1 cut(s) 103
Sse9I AATT 3 cut(s) 49, 227, 250
SspMI CTAG 1 cut(s) 234
StyI CCWWGG 1 cut(s) 138
TasI AATT 3 cut(s) 49, 227, 250
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TseI GCWGC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 36
XagI CCTNNNNNAGG 1 cut(s) 137
XapI RAATTY 2 cut(s) 227, 250
XceI RCATGY 1 cut(s) 173
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.