Rmu_sc0001850.1_g000028

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001850.1
OG0000890
Physical Location & Seq
Forward (+)
123294 .. 124886
1593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001850.1_g000028.1.cds

Sequence Viewer

Length: 1347 bp
atgctatattgttctcctaatacttgcaaagctcttgccagaaatataagcagaatctgtgagtctgctcttaccaataatcttggtaaatatcttgggatgccactgattcacactaaagttaccaagaatacttatgcccctattattgacaaagtccagagcacactcacaggatggaagagtaaagttctaagtcttgctggtaggctcactcttctgcaatctgttacctctacaattccaatatatgctatgcagactgttaagtttcctgtttccttatgcaacactcttgataaacttaaccgtgatttcttgtggggtgattgtaataatagtaagaagattcatttggtgaactgggacatggtatgtaggcctaagaataaaggtgggttggtcatcaaaggtacacttcatatgaaccaggcaatcacttggagagcaattgtttttggggctagattattgactcagcggttatcttggaggattggagatggtggtatgataaacttttggactgataagtggttgcttgatggacctcttttgcaaaaagttaatgaccctagtactatcaacctgagccttaaagtacgggactgctggaggggtgaagaatgggatgttgataagttaagggaacatcttgatgaatcaactattagtgatatacttaaaattcatgttggaataaatgggggaagagacaaactaatttggaatgctacttcaaatggacagttcacagtcaagtctgcttatctctctttattgcaacaagaggactatgttcatttcccttgggcttttttgtggaaactatctattcctcccaagttaaaaatcttcttttggttggtctgtcagggaaggttgcttactaatgtggaaagggtcaaaagacatttgaccactgattctacttgccctatataccatactcatcctgaatcaatgcttcattttctcagagattgcttcctagcaaagcatatatggaatagtattatctgcaatgaccccattggtagagctatgcagcttgattggagtggatggctatacgcaaatactcactatagatttaattgctacaatgaaacaataatagagtggtgtactatcaatgcaataactaccactatggcagctaagattagaatggagttgaaatggactaaacccccactgagatggttcaagctaaatgttgatggcgtcaggaatagaagtgggcagattggtgcaggaagagttattcgtgactctaggggctcatggatttcaagttttgttgctaataaaggaaggggttctgtgttggaagctgaaatatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

448

Amino Acids

51.38

Weight (kDa)

9.59

Isoelectric Point (pI)

27.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 481
AcsI RAATTY 1 cut(s) 687
AcyI GRCGYC 1 cut(s) 1227
AfaI GTAC 4 cut(s) 415, 580, 603, 1129
AgsI TTSAA 4 cut(s) 741, 1180, 1210, 1296
AjnI CCWGG 1 cut(s) 429
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AluBI AGCT 6 cut(s) 32, 1043, 1051, 1160, 1213, 1337
AluI AGCT 6 cut(s) 32, 1043, 1051, 1160, 1213, 1337
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 1 cut(s) 708
AlwNI CAGNNNCTG 1 cut(s) 57
AoxI GGCC 1 cut(s) 380
ApeKI GCWGC 2 cut(s) 1048, 1157
ApoI RAATTY 1 cut(s) 687
Asp700I GAANNNNTTC 1 cut(s) 1321
AspS9I GGNCC 1 cut(s) 548
AsuHPI GGTGA 3 cut(s) 338, 370, 632
AvaII GGWCC 1 cut(s) 548
BanII GRGCYC 1 cut(s) 1286
BarI GAAGNNNNNNTAC 2 cut(s) 871, 903
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 2 cut(s) 1060, 1169
BccI CCATC 6 cut(s) 171, 497, 539, 1059, 1197, 1217
BciT130I CCWGG 1 cut(s) 431
BcoDI GTCTC 1 cut(s) 708
BfaI CTAG 4 cut(s) 465, 576, 992, 1278
BfmI CTRYAG 1 cut(s) 1087
BisI GCNGC 2 cut(s) 1049, 1158
BlsI GCNGC 2 cut(s) 1050, 1159
BmcAI AGTACT 1 cut(s) 580
Bme1390I CCNGG 1 cut(s) 431
Bme18I GGWCC 1 cut(s) 548
BmgT120I GGNCC 1 cut(s) 548
BmrFI CCNGG 1 cut(s) 431
BmrI ACTGGG 1 cut(s) 373
BmsI GCATC 1 cut(s) 90
BmuI ACTGGG 1 cut(s) 373
BpmI CTGGAG 1 cut(s) 634
Bpu10I CCTNAGC 1 cut(s) 590
BsaHI GRCGYC 1 cut(s) 1227
BsaJI CCNNGG 1 cut(s) 809
Bse1I ACTGG 1 cut(s) 368
Bse3DI GCAATG 1 cut(s) 1030
BseBI CCWGG 1 cut(s) 431
BseDI CCNNGG 1 cut(s) 809
BseGI GGATG 5 cut(s) 105, 182, 637, 952, 1070
BseMI GCAATG 1 cut(s) 1030
BseMII CTCAG 4 cut(s) 491, 581, 991, 1190
BseNI ACTGG 1 cut(s) 368
BseXI GCAGC 2 cut(s) 1060, 1169
BsgI GTGCAG 1 cut(s) 1275
BshFI GGCC 1 cut(s) 382
BsiHKAI GWGCWC 1 cut(s) 167
BslFI GGGAC 2 cut(s) 380, 620
BsmAI GTCTC 1 cut(s) 708
BsmFI GGGAC 2 cut(s) 380, 620
BsmI GAATGC 1 cut(s) 736
BsnI GGCC 1 cut(s) 382
Bsp1286I GDGCHC 2 cut(s) 167, 1286
BspACI CCGC 1 cut(s) 481
BspANI GGCC 1 cut(s) 382
BspCNI CTCAG 4 cut(s) 490, 582, 990, 1191
BsrDI GCAATG 1 cut(s) 1030
BsrI ACTGG 1 cut(s) 368
BssECI CCNNGG 1 cut(s) 809
BssNI GRCGYC 1 cut(s) 1227
BssT1I CCWWGG 1 cut(s) 809
Bst2UI CCWGG 1 cut(s) 431
Bst4CI ACNGT 4 cut(s) 265, 311, 750, 757
Bst6I CTCTTC 4 cut(s) 176, 222, 706, 1255
BstACI GRCGYC 1 cut(s) 1227
BstDEI CTNAG 7 cut(s) 194, 384, 477, 590, 977, 1161, 1199
BstF5I GGATG 5 cut(s) 105, 182, 637, 952, 1070
BstMAI GTCTC 1 cut(s) 708
BstNI CCWGG 1 cut(s) 431
BstSCI CCNGG 1 cut(s) 429
BstSFI CTRYAG 1 cut(s) 1087
BstV1I GCAGC 2 cut(s) 1060, 1169
BstXI CCANNNNNNTGG 1 cut(s) 1203
BsuRI GGCC 1 cut(s) 382
BtsCI GGATG 5 cut(s) 105, 182, 637, 952, 1070
BtsIMutI CAGTG 3 cut(s) 104, 921, 1196
CaiI CAGNNNCTG 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 548
CseI GACGC 1 cut(s) 1216
Csp6I GTAC 4 cut(s) 414, 579, 602, 1128
CviAII CATG 3 cut(s) 370, 692, 1287
CviQI GTAC 4 cut(s) 414, 579, 602, 1128
DdeI CTNAG 7 cut(s) 194, 384, 477, 590, 977, 1161, 1199
Eam1104I CTCTTC 4 cut(s) 176, 222, 706, 1255
EarI CTCTTC 4 cut(s) 176, 222, 706, 1255
Eco130I CCWWGG 1 cut(s) 809
Eco147I AGGCCT 1 cut(s) 382
Eco24I GRGCYC 1 cut(s) 1286
Eco47I GGWCC 1 cut(s) 548
EcoRII CCWGG 1 cut(s) 429
EcoT14I CCWWGG 1 cut(s) 809
EcoT38I GRGCYC 1 cut(s) 1286
ErhI CCWWGG 1 cut(s) 809
FaeI CATG 3 cut(s) 373, 695, 1290
FalI AAGNNNNNCTT 2 cut(s) 402, 434
FaqI GGGAC 2 cut(s) 380, 620
FatI CATG 3 cut(s) 369, 691, 1286
FauNDI CATATG 1 cut(s) 423
Fnu4HI GCNGC 2 cut(s) 1049, 1158
FokI GGATG 5 cut(s) 112, 189, 644, 939, 1077
FriOI GRGCYC 1 cut(s) 1286
Fsp4HI GCNGC 2 cut(s) 1049, 1158
FspBI CTAG 4 cut(s) 465, 576, 992, 1278
GluI GCNGC 2 cut(s) 1049, 1158
GsuI CTGGAG 1 cut(s) 634
HaeIII GGCC 1 cut(s) 382
HgaI GACGC 1 cut(s) 1216
Hin1I GRCGYC 1 cut(s) 1227
Hin1II CATG 3 cut(s) 373, 695, 1290
HinfI GANTC 9 cut(s) 54, 62, 109, 349, 475, 662, 926, 959, 1274
HphI GGTGA 3 cut(s) 338, 370, 632
Hpy166II GTNNAC 4 cut(s) 361, 416, 753, 1128
Hpy188I TCNGA 1 cut(s) 980
Hpy188III TCNNGA 6 cut(s) 160, 296, 656, 956, 1231, 1271
Hpy8I GTNNAC 4 cut(s) 361, 416, 753, 1128
HpyAV CCTTC 2 cut(s) 873, 1311
HpyCH4III ACNGT 4 cut(s) 265, 311, 750, 757
HpyF3I CTNAG 7 cut(s) 194, 384, 477, 590, 977, 1161, 1199
Hsp92I GRCGYC 1 cut(s) 1227
Hsp92II CATG 3 cut(s) 373, 695, 1290
Lsp1109I GCAGC 2 cut(s) 1060, 1169
LweI GCATC 1 cut(s) 90
MaeI CTAG 4 cut(s) 465, 576, 992, 1278
MaeIII GTNAC 3 cut(s) 121, 229, 1271
MboII GAAGA 7 cut(s) 193, 209, 358, 635, 723, 847, 1272
MfeI CAATTG 1 cut(s) 450
MhlI GDGCHC 2 cut(s) 167, 1286
MluCI AATT 5 cut(s) 240, 450, 687, 723, 1096
MlyI GAGTC 3 cut(s) 71, 469, 1268
MmeI TCCRAC 2 cut(s) 676, 1311
MnlI CCTC 6 cut(s) 244, 486, 561, 609, 784, 849
MroXI GAANNNNTTC 1 cut(s) 1321
MseI TTAA 8 cut(s) 267, 306, 567, 597, 644, 684, 848, 1095
MslI CAYNNNNRTG 2 cut(s) 657, 1201
MspA1I CMGCKG 1 cut(s) 481
MspR9I CCNGG 1 cut(s) 431
MunI CAATTG 1 cut(s) 450
Mva1269I GAATGC 1 cut(s) 736
MvaI CCWGG 1 cut(s) 431
NdeI CATATG 1 cut(s) 423
NlaIII CATG 3 cut(s) 373, 695, 1290
NmuCI GTSAC 1 cut(s) 1271
PceI AGGCCT 1 cut(s) 382
PctI GAATGC 1 cut(s) 736
PdmI GAANNNNTTC 1 cut(s) 1321
PfeI GAWTC 6 cut(s) 54, 109, 349, 662, 926, 959
PflFI GACNNNGTC 1 cut(s) 155
PkrI GCNGC 2 cut(s) 1050, 1159
PleI GAGTC 3 cut(s) 70, 469, 1268
PpsI GAGTC 3 cut(s) 70, 469, 1268
Psp6I CCWGG 1 cut(s) 429
PspGI CCWGG 1 cut(s) 429
PspPI GGNCC 1 cut(s) 548
PstNI CAGNNNCTG 1 cut(s) 57
PsyI GACNNNGTC 1 cut(s) 155
RsaI GTAC 4 cut(s) 415, 580, 603, 1129
RsaNI GTAC 4 cut(s) 414, 579, 602, 1128
RseI CAYNNNNRTG 2 cut(s) 657, 1201
SaqAI TTAA 8 cut(s) 267, 306, 567, 597, 644, 684, 848, 1095
SatI GCNGC 2 cut(s) 1049, 1158
Sau96I GGNCC 1 cut(s) 548
ScaI AGTACT 1 cut(s) 580
SchI GAGTC 3 cut(s) 71, 469, 1268
ScrFI CCNGG 1 cut(s) 431
SduI GDGCHC 2 cut(s) 167, 1286
SfaNI GCATC 1 cut(s) 90
SfcI CTRYAG 1 cut(s) 1087
SinI GGWCC 1 cut(s) 548
SmiMI CAYNNNNRTG 2 cut(s) 657, 1201
Sse9I AATT 5 cut(s) 240, 450, 687, 723, 1096
SseBI AGGCCT 1 cut(s) 382
SsiI CCGC 1 cut(s) 481
SspMI CTAG 4 cut(s) 465, 576, 992, 1278
StuI AGGCCT 1 cut(s) 382
StyD4I CCNGG 1 cut(s) 429
StyI CCWWGG 1 cut(s) 809
TaaI ACNGT 4 cut(s) 265, 311, 750, 757
TasI AATT 5 cut(s) 240, 450, 687, 723, 1096
TatI WGTACW 2 cut(s) 578, 1127
TfiI GAWTC 6 cut(s) 54, 109, 349, 662, 926, 959
Tru1I TTAA 8 cut(s) 267, 306, 567, 597, 644, 684, 848, 1095
Tru9I TTAA 8 cut(s) 267, 306, 567, 597, 644, 684, 848, 1095
TscAI CASTG 3 cut(s) 111, 928, 1203
TseFI GTSAC 1 cut(s) 1271
TseI GCWGC 2 cut(s) 1048, 1157
Tsp45I GTSAC 1 cut(s) 1271
TspDTI ATGAA 8 cut(s) 341, 410, 440, 675, 680, 791, 959, 1122
TspRI CASTG 3 cut(s) 111, 928, 1203
Tth111I GACNNNGTC 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 548
XapI RAATTY 1 cut(s) 687
XmnI GAANNNNTTC 1 cut(s) 1321
XspI CTAG 4 cut(s) 465, 576, 992, 1278
ZrmI AGTACT 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.