RchiOBHm_Chr1g0319821

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000890
Physical Location & Seq
Forward (+)
7455941 .. 7456427
487 bp
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UTR
Exon/CDS
Intron
PRQ55003

Sequence Viewer

Length: 300 bp
ATGGCTTCTGCCTCCCAATGCCATCATCTTTTGGTTGAGTGTGATTCTGAGGTCCTGGTGAGTTTAATCAATCATGGAGTGGATGAGTTACATCCTCTAAAAACGATCATTGATTGCTGCAATTCTTTGAGAAGACAGTTCTGGAGTTGTGAGATAACACATGTTTATAGGGAAATTAACCAGGTTGCTGATGTGCTTTCCAAGGCTGGTTTGGACACTGACATTGGAGTGATGCCTCCTCCACAAGTGATGCCTTCCTTGATGACTTGTGTGAAAGTCCTATCTGCTTCTGATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

99

Amino Acids

10.94

Weight (kDa)

5.08

Isoelectric Point (pI)

45.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 2 - 69 3e-14 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflIII ACRYGT 1 cut(s) 160
AjnI CCWGG 2 cut(s) 54, 180
ApeKI GCWGC 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 52
AsuHPI GGTGA 1 cut(s) 70
AvaII GGWCC 1 cut(s) 52
BbsI GAAGAC 1 cut(s) 139
BbvI GCAGC 1 cut(s) 104
BccI CCATC 1 cut(s) 30
BciT130I CCWGG 2 cut(s) 56, 182
BisI GCNGC 1 cut(s) 118
BlsI GCNGC 1 cut(s) 119
Bme1390I CCNGG 2 cut(s) 56, 182
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 52
BmrFI CCNGG 2 cut(s) 56, 182
BmsI GCATC 2 cut(s) 222, 240
BpiI GAAGAC 1 cut(s) 139
BpmI CTGGAG 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 201
BseBI CCWGG 2 cut(s) 56, 182
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 2 cut(s) 88, 91
BseMII CTCAG 1 cut(s) 39
BseRI GAGGAG 1 cut(s) 228
BseXI GCAGC 1 cut(s) 104
Bsp143I GATC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 2 cut(s) 56, 182
Bst4CI ACNGT 1 cut(s) 138
BstDEI CTNAG 1 cut(s) 48
BstF5I GGATG 2 cut(s) 88, 91
BstKTI GATC 1 cut(s) 108
BstMBI GATC 1 cut(s) 105
BstNI CCWGG 2 cut(s) 56, 182
BstNSI RCATGY 1 cut(s) 164
BstSCI CCNGG 2 cut(s) 54, 180
BstV1I GCAGC 1 cut(s) 104
BstV2I GAAGAC 1 cut(s) 139
BtsCI GGATG 2 cut(s) 88, 91
BtsIMutI CAGTG 1 cut(s) 216
Cfr13I GGNCC 1 cut(s) 52
CsiI ACCWGGT 1 cut(s) 180
CviAII CATG 2 cut(s) 74, 161
CviJI RGCY 2 cut(s) 5, 206
CviKI_1 RGCY 2 cut(s) 5, 206
DdeI CTNAG 1 cut(s) 48
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 52
EcoO109I RGGNCCY 1 cut(s) 52
EcoRII CCWGG 2 cut(s) 54, 180
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 2 cut(s) 77, 164
FaiI YATR 4 cut(s) 75, 162, 168, 296
FatI CATG 2 cut(s) 73, 160
Fnu4HI GCNGC 1 cut(s) 118
FokI GGATG 2 cut(s) 78, 95
Fsp4HI GCNGC 1 cut(s) 118
GluI GCNGC 1 cut(s) 118
GsuI CTGGAG 1 cut(s) 163
Hin1II CATG 2 cut(s) 77, 164
HinfI GANTC 1 cut(s) 44
HphI GGTGA 1 cut(s) 70
Hpy188I TCNGA 2 cut(s) 49, 292
Hpy188III TCNNGA 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 264
HpyCH4III ACNGT 1 cut(s) 138
HpyCH4V TGCA 1 cut(s) 120
HpyF3I CTNAG 1 cut(s) 48
Hsp92II CATG 2 cut(s) 77, 164
Kzo9I GATC 1 cut(s) 105
LpnPI CCDG 6 cut(s) 41, 68, 127, 167, 192, 194
Lsp1109I GCAGC 1 cut(s) 104
LweI GCATC 2 cut(s) 222, 240
MabI ACCWGGT 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 87
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MboII GAAGA 1 cut(s) 144
MluCI AATT 2 cut(s) 121, 174
MnlI CCTC 5 cut(s) 22, 43, 105, 246, 249
MseI TTAA 2 cut(s) 65, 177
MslI CAYNNNNRTG 1 cut(s) 227
MspR9I CCNGG 2 cut(s) 56, 182
MvaI CCWGG 2 cut(s) 56, 182
NdeII GATC 1 cut(s) 105
NlaIII CATG 2 cut(s) 77, 164
NspI RCATGY 1 cut(s) 164
PciI ACATGT 1 cut(s) 160
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 1 cut(s) 119
PpuMI RGGWCCY 1 cut(s) 52
PscI ACATGT 1 cut(s) 160
Psp5II RGGWCCY 1 cut(s) 52
Psp6I CCWGG 2 cut(s) 54, 180
PspGI CCWGG 2 cut(s) 54, 180
PspPI GGNCC 1 cut(s) 52
PspPPI RGGWCCY 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 227
SaqAI TTAA 2 cut(s) 65, 177
SatI GCNGC 1 cut(s) 118
Sau3AI GATC 1 cut(s) 105
Sau96I GGNCC 1 cut(s) 52
ScrFI CCNGG 2 cut(s) 56, 182
SetI ASST 2 cut(s) 54, 186
SexAI ACCWGGT 1 cut(s) 180
SfaNI GCATC 2 cut(s) 222, 240
SinI GGWCC 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 227
Sse9I AATT 2 cut(s) 121, 174
StyD4I CCNGG 2 cut(s) 54, 180
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 138
TasI AATT 2 cut(s) 121, 174
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 2 cut(s) 65, 177
Tru9I TTAA 2 cut(s) 65, 177
TscAI CASTG 1 cut(s) 223
TseI GCWGC 1 cut(s) 117
TspRI CASTG 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 52
XceI RCATGY 1 cut(s) 164
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.