Rmu_sc0003826.1_g000010

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003826.1
OG0000890
Physical Location & Seq
Forward (+)
66148 .. 66769
622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003826.1_g000010.1.cds

Sequence Viewer

Length: 480 bp
atgaaaattgcaagccaaatcgcttccaatgctgctatggaatggtatcaattatcaagaactgccaatgttactagtgattattatttaaacatcttgccttggaaaaagcttctccctggaactgcaaagctgaatgttgatggtgctcgatgttgtgcaaatggtcgcattgctgctggtggagtcttaagatattataatggggattggatctgcggttttcaggccaaccttggtattggtcaagttttagatgttggaggcttggggcacatgctttctctgtttgattctgtgaaccttatgcatattttcagagaatgcaacggcactgcggatgctcttgcaaaatcgggccttgatcatgaccatggtgttgtcgtatttgactcccctcctccccatgttgcttctgcatttcttgatgatctcagtgaagtctccagatccaggtcttgtgttagacctgtaacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

159

Amino Acids

17.16

Weight (kDa)

6.49

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 201
AciI CCGC 2 cut(s) 219, 338
AclWI GGATC 2 cut(s) 221, 444
AfiI CCNNNNNNNGG 1 cut(s) 453
AflII CTTAAG 1 cut(s) 190
AhlI ACTAGT 1 cut(s) 74
AjnI CCWGG 2 cut(s) 118, 452
AluBI AGCT 2 cut(s) 112, 133
AluI AGCT 2 cut(s) 112, 133
Alw21I GWGCWC 1 cut(s) 151
Alw26I GTCTC 1 cut(s) 448
AlwI GGATC 2 cut(s) 221, 444
AoxI GGCC 2 cut(s) 228, 358
ApeKI GCWGC 2 cut(s) 32, 176
AspS9I GGNCC 1 cut(s) 358
BaeGI GKGCMC 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 2 cut(s) 19, 163
BccI CCATC 1 cut(s) 137
BceAI ACGGC 1 cut(s) 346
BciT130I CCWGG 2 cut(s) 120, 454
BclI TGATCA 1 cut(s) 364
BcoDI GTCTC 1 cut(s) 448
BcuI ACTAGT 1 cut(s) 74
BfaI CTAG 1 cut(s) 75
BfrI CTTAAG 1 cut(s) 190
BisI GCNGC 2 cut(s) 33, 177
BlsI GCNGC 2 cut(s) 34, 178
Bme1390I CCNGG 2 cut(s) 120, 454
BmgT120I GGNCC 1 cut(s) 358
BmrFI CCNGG 2 cut(s) 120, 454
BmsI GCATC 1 cut(s) 331
BpmI CTGGAG 1 cut(s) 430
BsaJI CCNNGG 4 cut(s) 101, 118, 235, 373
Bsc4I CCNNNNNNNGG 1 cut(s) 453
Bse3DI GCAATG 1 cut(s) 171
BseBI CCWGG 2 cut(s) 120, 454
BseDI CCNNGG 4 cut(s) 101, 118, 235, 373
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 1 cut(s) 453
BseMI GCAATG 1 cut(s) 171
BseMII CTCAG 1 cut(s) 448
BseRI GAGGAG 1 cut(s) 390
BseSI GKGCMC 1 cut(s) 276
BseXI GCAGC 2 cut(s) 19, 163
BshFI GGCC 2 cut(s) 230, 360
BsiHKAI GWGCWC 1 cut(s) 151
BslI CCNNNNNNNGG 1 cut(s) 453
BsmAI GTCTC 1 cut(s) 448
BsmI GAATGC 1 cut(s) 329
BsnI GGCC 2 cut(s) 230, 360
Bsp1286I GDGCHC 2 cut(s) 151, 276
Bsp143I GATC 4 cut(s) 213, 364, 430, 449
Bsp19I CCATGG 1 cut(s) 373
BspACI CCGC 2 cut(s) 219, 338
BspANI GGCC 2 cut(s) 230, 360
BspCNI CTCAG 1 cut(s) 447
BspHI TCATGA 1 cut(s) 367
BspPI GGATC 2 cut(s) 221, 444
BspTI CTTAAG 1 cut(s) 190
BsrDI GCAATG 1 cut(s) 171
BssECI CCNNGG 4 cut(s) 101, 118, 235, 373
BssMI GATC 4 cut(s) 213, 364, 430, 449
BssT1I CCWWGG 3 cut(s) 101, 235, 373
Bst2UI CCWGG 2 cut(s) 120, 454
BstAFI CTTAAG 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 2 cut(s) 434, 477
BstDSI CCRYGG 1 cut(s) 373
BstF5I GGATG 1 cut(s) 346
BstKTI GATC 4 cut(s) 216, 367, 433, 452
BstMAI GTCTC 1 cut(s) 448
BstMBI GATC 4 cut(s) 213, 364, 430, 449
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 2 cut(s) 120, 454
BstNSI RCATGY 1 cut(s) 280
BstSCI CCNGG 2 cut(s) 118, 452
BstSLI GKGCMC 1 cut(s) 276
BstV1I GCAGC 2 cut(s) 19, 163
BstX2I RGATCY 2 cut(s) 213, 449
BstYI RGATCY 2 cut(s) 213, 449
BsuRI GGCC 2 cut(s) 230, 360
BtgI CCRYGG 1 cut(s) 373
BtsCI GGATG 1 cut(s) 346
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 2 cut(s) 333, 442
Cac8I GCNNGC 1 cut(s) 13
CciI TCATGA 1 cut(s) 367
Cfr13I GGNCC 1 cut(s) 358
CviAII CATG 4 cut(s) 277, 368, 374, 407
CviJI RGCY 6 cut(s) 15, 112, 133, 230, 267, 360
CviKI_1 RGCY 6 cut(s) 15, 112, 133, 230, 267, 360
DdeI CTNAG 2 cut(s) 434, 477
DpnI GATC 4 cut(s) 215, 366, 432, 451
DpnII GATC 4 cut(s) 213, 364, 430, 449
DraI TTTAAA 1 cut(s) 90
Eco130I CCWWGG 3 cut(s) 101, 235, 373
EcoRII CCWGG 2 cut(s) 118, 452
EcoT14I CCWWGG 3 cut(s) 101, 235, 373
EcoT22I ATGCAT 1 cut(s) 312
ErhI CCWWGG 3 cut(s) 101, 235, 373
FaeI CATG 4 cut(s) 280, 371, 377, 410
FaiI YATR 8 cut(s) 38, 201, 278, 308, 312, 369, 375, 408
FatI CATG 4 cut(s) 276, 367, 373, 406
FbaI TGATCA 1 cut(s) 364
Fnu4HI GCNGC 2 cut(s) 33, 177
FokI GGATG 1 cut(s) 353
Fsp4HI GCNGC 2 cut(s) 33, 177
FspBI CTAG 1 cut(s) 75
GluI GCNGC 2 cut(s) 33, 177
GsuI CTGGAG 1 cut(s) 430
HaeIII GGCC 2 cut(s) 230, 360
Hin1II CATG 4 cut(s) 280, 371, 377, 410
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 3 cut(s) 186, 293, 392
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 1 cut(s) 320
Hpy188III TCNNGA 4 cut(s) 57, 368, 425, 447
Hpy8I GTNNAC 1 cut(s) 301
HpyCH4V TGCA 7 cut(s) 11, 128, 161, 310, 327, 350, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 2 cut(s) 434, 477
Hsp92II CATG 4 cut(s) 280, 371, 377, 410
Ksp22I TGATCA 1 cut(s) 364
Kzo9I GATC 4 cut(s) 213, 364, 430, 449
LpnPI CCDG 7 cut(s) 105, 132, 165, 212, 439, 460, 466
Lsp1109I GCAGC 2 cut(s) 19, 163
LweI GCATC 1 cut(s) 331
MaeI CTAG 1 cut(s) 75
MaeIII GTNAC 2 cut(s) 70, 472
MalI GATC 4 cut(s) 215, 366, 432, 451
MboI GATC 4 cut(s) 213, 364, 430, 449
MflI RGATCY 2 cut(s) 213, 449
MhlI GDGCHC 2 cut(s) 151, 276
MluCI AATT 2 cut(s) 6, 50
MlyI GAGTC 2 cut(s) 195, 386
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 3 cut(s) 257, 408, 411
Mph1103I ATGCAT 1 cut(s) 312
MseI TTAA 2 cut(s) 89, 191
MslI CAYNNNNRTG 1 cut(s) 372
MspCI CTTAAG 1 cut(s) 190
MspR9I CCNGG 2 cut(s) 120, 454
Mva1269I GAATGC 1 cut(s) 329
MvaI CCWGG 2 cut(s) 120, 454
MwoI GCNNNNNNNGC 1 cut(s) 29
NcoI CCATGG 1 cut(s) 373
NdeII GATC 4 cut(s) 213, 364, 430, 449
NlaIII CATG 4 cut(s) 280, 371, 377, 410
NsiI ATGCAT 1 cut(s) 312
NspI RCATGY 1 cut(s) 280
PagI TCATGA 1 cut(s) 367
PctI GAATGC 1 cut(s) 329
PfeI GAWTC 1 cut(s) 293
PkrI GCNGC 2 cut(s) 34, 178
PleI GAGTC 2 cut(s) 194, 386
PpsI GAGTC 2 cut(s) 194, 386
PsiI TTATAA 1 cut(s) 201
Psp6I CCWGG 2 cut(s) 118, 452
PspGI CCWGG 2 cut(s) 118, 452
PspPI GGNCC 1 cut(s) 358
PsuI RGATCY 2 cut(s) 213, 449
RseI CAYNNNNRTG 1 cut(s) 372
SaqAI TTAA 2 cut(s) 89, 191
SatI GCNGC 2 cut(s) 33, 177
Sau3AI GATC 4 cut(s) 213, 364, 430, 449
Sau96I GGNCC 1 cut(s) 358
SchI GAGTC 2 cut(s) 195, 386
ScrFI CCNGG 2 cut(s) 120, 454
SduI GDGCHC 2 cut(s) 151, 276
SetI ASST 6 cut(s) 114, 135, 237, 306, 458, 472
SfaNI GCATC 1 cut(s) 331
SmiMI CAYNNNNRTG 1 cut(s) 372
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
SpeI ACTAGT 1 cut(s) 74
Sse9I AATT 2 cut(s) 6, 50
SsiI CCGC 2 cut(s) 219, 338
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 2 cut(s) 118, 452
StyI CCWWGG 3 cut(s) 101, 235, 373
TaqI TCGA 1 cut(s) 151
TasI AATT 2 cut(s) 6, 50
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 2 cut(s) 89, 191
Tru9I TTAA 2 cut(s) 89, 191
TscAI CASTG 2 cut(s) 340, 442
TseI GCWGC 2 cut(s) 32, 176
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 340, 442
Vha464I CTTAAG 1 cut(s) 190
XceI RCATGY 1 cut(s) 280
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
XspI CTAG 1 cut(s) 75
Zsp2I ATGCAT 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.