Rmu_sc0021240.1_g000002

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021240.1
OG0000890
Physical Location & Seq
Reverse (-)
16859 .. 17374
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021240.1_g000002.1.cds

Sequence Viewer

Length: 516 bp
atgcatctgcatctggattggaagagctggatggcagccaatattcaatgcaagcggacttgttatgaagaattaaattggtgtattgtctttgctttcgcttgctggtatatctggacgtggaggaataagattatatttgatgatgagtttcattatccaattaatcccagcattctgatcattgatgctactaaggagtggagctcaaccacctcaaagaatttaattcctaatcaaaagactattgttatgttgcattggctcatgcctcctctgaattggtgcaagctgaatattgatggcacaagagagcgaagtggaaagattggtgctggtggggttctcaaggattcttgtggttcttggctttctgggttcactgctaatctaggctgtggcagtgttattcaagctcaggcctggggtttgttattggggcttagaatgtctgttactgctaattgccagaaggtcattattgaaagtgattctgaaatccttggcactttatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

171

Amino Acids

19.45

Weight (kDa)

7.56

Isoelectric Point (pI)

48.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 55
AcsI RAATTY 1 cut(s) 223
AgsI TTSAA 3 cut(s) 47, 413, 485
AjiI CACGTC 1 cut(s) 120
AjnI CCWGG 1 cut(s) 422
AluBI AGCT 4 cut(s) 27, 207, 292, 416
AluI AGCT 4 cut(s) 27, 207, 292, 416
Alw21I GWGCWC 1 cut(s) 209
AoxI GGCC 1 cut(s) 420
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 1 cut(s) 223
AseI ATTAAT 1 cut(s) 165
BanII GRGCYC 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 47
BccI CCATC 2 cut(s) 25, 296
BciT130I CCWGG 1 cut(s) 424
BclI TGATCA 1 cut(s) 180
BfaI CTAG 1 cut(s) 392
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 1 cut(s) 424
BmgBI CACGTC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 424
BmsI GCATC 3 cut(s) 13, 19, 178
BplI GAGNNNNNCTC 2 cut(s) 191, 223
Bpu10I CCTNAGC 1 cut(s) 417
BpuEI CTTGAG 1 cut(s) 332
BsaJI CCNNGG 2 cut(s) 423, 502
BseBI CCWGG 1 cut(s) 424
BseDI CCNNGG 2 cut(s) 423, 502
BseGI GGATG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 431
BseRI GAGGAG 1 cut(s) 264
BseXI GCAGC 1 cut(s) 47
BseYI CCCAGC 1 cut(s) 170
BshFI GGCC 1 cut(s) 422
BsiHKAI GWGCWC 1 cut(s) 209
BsmI GAATGC 1 cut(s) 174
BsnI GGCC 1 cut(s) 422
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 1 cut(s) 180
BspACI CCGC 1 cut(s) 55
BspANI GGCC 1 cut(s) 422
BspCNI CTCAG 1 cut(s) 430
BspQI GCTCTTC 1 cut(s) 17
BssECI CCNNGG 2 cut(s) 423, 502
BssMI GATC 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 502
Bst2UI CCWGG 1 cut(s) 424
Bst6I CTCTTC 1 cut(s) 17
BstC8I GCNNGC 3 cut(s) 53, 103, 290
BstDEI CTNAG 3 cut(s) 195, 417, 443
BstF5I GGATG 1 cut(s) 36
BstKTI GATC 1 cut(s) 183
BstMBI GATC 1 cut(s) 180
BstNI CCWGG 1 cut(s) 424
BstSCI CCNGG 1 cut(s) 422
BstV1I GCAGC 1 cut(s) 47
BsuRI GGCC 1 cut(s) 422
BtrI CACGTC 1 cut(s) 120
BtsCI GGATG 1 cut(s) 36
BtsI GCAGTG 2 cut(s) 381, 409
BtsIMutI CAGTG 2 cut(s) 381, 409
Cac8I GCNNGC 3 cut(s) 53, 103, 290
CviAII CATG 1 cut(s) 268
DdeI CTNAG 3 cut(s) 195, 417, 443
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
Ecl136II GAGCTC 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 502
Eco147I AGGCCT 1 cut(s) 422
Eco24I GRGCYC 1 cut(s) 209
Eco53kI GAGCTC 1 cut(s) 207
EcoICRI GAGCTC 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 422
EcoT14I CCWWGG 1 cut(s) 502
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 502
FaeI CATG 1 cut(s) 271
FaiI YATR 6 cut(s) 66, 111, 137, 254, 269, 514
FatI CATG 1 cut(s) 267
FbaI TGATCA 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 1 cut(s) 43
FriOI GRGCYC 1 cut(s) 209
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 1 cut(s) 392
GluI GCNGC 1 cut(s) 36
GsaI CCCAGC 1 cut(s) 174
HaeIII GGCC 1 cut(s) 422
Hin1II CATG 1 cut(s) 271
HinfI GANTC 2 cut(s) 353, 491
Hpy166II GTNNAC 1 cut(s) 381
Hpy188I TCNGA 3 cut(s) 180, 279, 496
Hpy188III TCNNGA 2 cut(s) 14, 115
Hpy8I GTNNAC 1 cut(s) 381
HpyAV CCTTC 1 cut(s) 466
HpyCH4IV ACGT 1 cut(s) 119
HpyCH4V TGCA 5 cut(s) 4, 10, 51, 259, 288
HpyF3I CTNAG 3 cut(s) 195, 417, 443
HpySE526I ACGT 1 cut(s) 119
Hsp92II CATG 1 cut(s) 271
Ksp22I TGATCA 1 cut(s) 180
Kzo9I GATC 1 cut(s) 180
LguI GCTCTTC 1 cut(s) 17
LmnI GCTCC 1 cut(s) 204
Lsp1109I GCAGC 1 cut(s) 47
LweI GCATC 3 cut(s) 13, 19, 178
MaeI CTAG 1 cut(s) 392
MaeII ACGT 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 454
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 2 cut(s) 34, 80
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 7 cut(s) 71, 76, 162, 223, 228, 280, 463
MnlI CCTC 4 cut(s) 117, 226, 282, 285
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 74, 165, 227
MspR9I CCNGG 1 cut(s) 424
Mva1269I GAATGC 1 cut(s) 174
MvaI CCWGG 1 cut(s) 424
NdeII GATC 1 cut(s) 180
NlaIII CATG 1 cut(s) 271
NsiI ATGCAT 1 cut(s) 6
PceI AGGCCT 1 cut(s) 422
PciSI GCTCTTC 1 cut(s) 17
PctI GAATGC 1 cut(s) 174
PfeI GAWTC 2 cut(s) 353, 491
PkrI GCNGC 1 cut(s) 37
PshBI ATTAAT 1 cut(s) 165
Psp124BI GAGCTC 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 422
PspFI CCCAGC 1 cut(s) 170
PspGI CCWGG 1 cut(s) 422
SacI GAGCTC 1 cut(s) 209
SapI GCTCTTC 1 cut(s) 17
SaqAI TTAA 3 cut(s) 74, 165, 227
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 1 cut(s) 180
ScrFI CCNGG 1 cut(s) 424
SduI GDGCHC 1 cut(s) 209
SetI ASST 7 cut(s) 29, 122, 209, 218, 294, 418, 477
SfaNI GCATC 3 cut(s) 13, 19, 178
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 7 cut(s) 71, 76, 162, 223, 228, 280, 463
SseBI AGGCCT 1 cut(s) 422
SsiI CCGC 1 cut(s) 55
SspI AATATT 2 cut(s) 43, 298
SspMI CTAG 1 cut(s) 392
SstI GAGCTC 1 cut(s) 209
StuI AGGCCT 1 cut(s) 422
StyD4I CCNGG 1 cut(s) 422
StyI CCWWGG 1 cut(s) 502
TaiI ACGT 1 cut(s) 122
TasI AATT 7 cut(s) 71, 76, 162, 223, 228, 280, 463
TfiI GAWTC 2 cut(s) 353, 491
Tru1I TTAA 3 cut(s) 74, 165, 227
Tru9I TTAA 3 cut(s) 74, 165, 227
TscAI CASTG 2 cut(s) 388, 409
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 2 cut(s) 81, 143
TspRI CASTG 2 cut(s) 388, 409
VspI ATTAAT 1 cut(s) 165
XapI RAATTY 1 cut(s) 223
XspI CTAG 1 cut(s) 392
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.