RchiOBHm_Chr7g0224511

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000890
Physical Location & Seq
Forward (+)
46714465 .. 46715554
1090 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20104

Sequence Viewer

Length: 324 bp
ATGTCTATTGATGCTCATTATCAACATGTGTTGGTTGAATCTGACTCTGAAGTCCTTGTCAAGTTGATGAATGATGGTGTGGATGCTTTGCACCATTTGAAGTCTGTGATTAATAGTTGTCAGGCTCTTCATAGGCAGTTTCAAAGGTGTGAAATAAAGCATATCTACAGGGAAGTAAACAAGGTTGCTGATGTGTTGTCCAAGATTGGATTGGATTCTGAGATTGGAGTGCACTTCATGATGCAGCCTCCTCCACAAGTTATCACTATTCTGTTGGATGATTTGTGTGAAACTCCTTGTTTTAGGAGCATACCTTGTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

107

Amino Acids

12.17

Weight (kDa)

5.71

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 5 - 68 5e-14 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 50
AcuI CTGAAG 1 cut(s) 69
AflIII ACRYGT 1 cut(s) 25
AgsI TTSAA 3 cut(s) 38, 100, 143
Alw21I GWGCWC 1 cut(s) 234
Alw44I GTGCAC 1 cut(s) 230
ApaLI GTGCAC 1 cut(s) 230
ApeKI GCWGC 1 cut(s) 244
AseI ATTAAT 1 cut(s) 111
BaeGI GKGCMC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 1 cut(s) 256
BccI CCATC 1 cut(s) 68
BfaI CTAG 1 cut(s) 322
BfmI CTRYAG 1 cut(s) 166
BisI GCNGC 1 cut(s) 245
BlsI GCNGC 1 cut(s) 246
BmsI GCATC 2 cut(s) 73, 231
BseGI GGATG 2 cut(s) 88, 283
BseMII CTCAG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 240
BseSI GKGCMC 1 cut(s) 234
BseXI GCAGC 1 cut(s) 256
BsiHKAI GWGCWC 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 234
BspCNI CTCAG 1 cut(s) 211
BspHI TCATGA 1 cut(s) 237
BspQI GCTCTTC 1 cut(s) 132
Bst6I CTCTTC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 219
BstF5I GGATG 2 cut(s) 88, 283
BstNSI RCATGY 1 cut(s) 29
BstSFI CTRYAG 1 cut(s) 166
BstSLI GKGCMC 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 256
BtsCI GGATG 2 cut(s) 88, 283
CciI TCATGA 1 cut(s) 237
CviAII CATG 2 cut(s) 26, 238
CviJI RGCY 2 cut(s) 125, 247
CviKI_1 RGCY 2 cut(s) 125, 247
DdeI CTNAG 1 cut(s) 219
DrdI GACNNNNNNGTC 1 cut(s) 50
DseDI GACNNNNNNGTC 1 cut(s) 50
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 69
FaeI CATG 2 cut(s) 29, 241
FaiI YATR 5 cut(s) 27, 132, 162, 239, 311
FatI CATG 2 cut(s) 25, 237
Fnu4HI GCNGC 1 cut(s) 245
FokI GGATG 2 cut(s) 95, 290
Fsp4HI GCNGC 1 cut(s) 245
FspBI CTAG 1 cut(s) 322
GluI GCNGC 1 cut(s) 245
Hin1II CATG 2 cut(s) 29, 241
HinfI GANTC 3 cut(s) 38, 44, 215
Hpy166II GTNNAC 2 cut(s) 178, 232
Hpy188I TCNGA 3 cut(s) 43, 49, 220
Hpy188III TCNNGA 1 cut(s) 238
Hpy8I GTNNAC 2 cut(s) 178, 232
HpyCH4V TGCA 3 cut(s) 91, 232, 244
HpyF3I CTNAG 1 cut(s) 219
Hsp92II CATG 2 cut(s) 29, 241
LguI GCTCTTC 1 cut(s) 132
LmnI GCTCC 1 cut(s) 306
LpnPI CCDG 2 cut(s) 107, 154
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 2 cut(s) 73, 231
MaeI CTAG 1 cut(s) 322
MboII GAAGA 1 cut(s) 119
MhlI GDGCHC 1 cut(s) 234
MlyI GAGTC 1 cut(s) 38
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 2 cut(s) 258, 261
MseI TTAA 1 cut(s) 111
NlaIII CATG 2 cut(s) 29, 241
NspI RCATGY 1 cut(s) 29
PagI TCATGA 1 cut(s) 237
PciI ACATGT 1 cut(s) 25
PciSI GCTCTTC 1 cut(s) 132
PfeI GAWTC 2 cut(s) 38, 215
PkrI GCNGC 1 cut(s) 246
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
PscI ACATGT 1 cut(s) 25
PshBI ATTAAT 1 cut(s) 111
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 1 cut(s) 245
SchI GAGTC 1 cut(s) 38
SduI GDGCHC 1 cut(s) 234
SetI ASST 3 cut(s) 149, 186, 316
SfaNI GCATC 2 cut(s) 73, 231
SfcI CTRYAG 1 cut(s) 166
SspMI CTAG 1 cut(s) 322
TfiI GAWTC 2 cut(s) 38, 215
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TseI GCWGC 1 cut(s) 244
TspDTI ATGAA 3 cut(s) 83, 119, 226
VneI GTGCAC 1 cut(s) 230
VspI ATTAAT 1 cut(s) 111
XceI RCATGY 1 cut(s) 29
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
XspI CTAG 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.