RchiOBHm_Chr7g0181271

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000890
Physical Location & Seq
Reverse (-)
2864359 .. 2864883
525 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16167

Sequence Viewer

Length: 525 bp
ATGGCTCAGCTGTGTTGGCATTTTCCGCCTAAGGATTGGTTTAAGTTAAATGTTGATGGTAGTTGTCACAAAAATACAGGGATTATTTGTGCTGGAGGAGCCCTTCGAAATGATAAGGGGGAATGGATGAATGGATTTGCTGTCAAGTTGGGCATTGGTCAAGTTGTTGAGGCTGAACTTTGGGGGCTTCTTAAAGGAATGGAAATGGCTTGGCAGAATGAGTGTAGACAATTGAAAATTGAAATGGATTCACTTGTTGCGGTTAAGTTGGTTCTCTCTCCCATTGCTCATCTCCATCCTCTTTATAGTATTGTGGCAAGTTGTCAGGAACTCTTGAGTAGGGATTGGAATGTGTCCCTTATCCATGTTTACAGAGAATGTAATTCAGTGGCTGATTTGTTAGCAAATATTGGGCATGGGTTTGAGCCTGGATGCAGATTCTTTAGCTCTCCTCCTACTGATGTTGTGCCTCTTCTGGAAGCTGATCTATTGGGTTTGTCCAAACCAAGACTAATTGTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MATH RVT_3 zf-RVT

Protein Analysis

174

Amino Acids

19.36

Weight (kDa)

6.04

Isoelectric Point (pI)

35.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 17 - 136 3.2e-25 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 226
AciI CCGC 2 cut(s) 26, 260
AgsI TTSAA 2 cut(s) 235, 242
AjnI CCWGG 1 cut(s) 427
AluBI AGCT 3 cut(s) 10, 447, 482
AluI AGCT 3 cut(s) 10, 447, 482
AlwNI CAGNNNCTG 1 cut(s) 392
AsuII TTCGAA 1 cut(s) 106
AxyI CCTNAGG 1 cut(s) 30
BanII GRGCYC 1 cut(s) 103
BccI CCATC 2 cut(s) 50, 303
BciT130I CCWGG 1 cut(s) 429
BlpI GCTNAGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 429
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 1 cut(s) 429
BmsI GCATC 1 cut(s) 422
BpmI CTGGAG 1 cut(s) 114
Bpu1102I GCTNAGC 1 cut(s) 6
Bpu14I TTCGAA 1 cut(s) 106
BpuEI CTTGAG 1 cut(s) 355
Bse21I CCTNAGG 1 cut(s) 30
Bse3DI GCAATG 1 cut(s) 282
BseBI CCWGG 1 cut(s) 429
BseGI GGATG 3 cut(s) 132, 295, 437
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 1 cut(s) 20
BseRI GAGGAG 2 cut(s) 111, 441
BslFI GGGAC 1 cut(s) 340
BsmFI GGGAC 1 cut(s) 340
Bsp119I TTCGAA 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 103
Bsp143I GATC 1 cut(s) 484
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 2 cut(s) 26, 260
BspCNI CTCAG 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 100
BspT104I TTCGAA 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 282
BssMI GATC 1 cut(s) 484
Bst2UI CCWGG 1 cut(s) 429
Bst6I CTCTTC 1 cut(s) 477
BstBI TTCGAA 1 cut(s) 106
BstDEI CTNAG 2 cut(s) 6, 30
BstF5I GGATG 3 cut(s) 132, 295, 437
BstKTI GATC 1 cut(s) 487
BstMBI GATC 1 cut(s) 484
BstMWI GCNNNNNNNGC 3 cut(s) 16, 25, 98
BstNI CCWGG 1 cut(s) 429
BstSCI CCNGG 1 cut(s) 427
Bsu36I CCTNAGG 1 cut(s) 30
BtsCI GGATG 3 cut(s) 132, 295, 437
BtsIMutI CAGTG 1 cut(s) 393
CaiI CAGNNNCTG 1 cut(s) 392
CviAII CATG 2 cut(s) 365, 416
DdeI CTNAG 2 cut(s) 6, 30
DpnI GATC 1 cut(s) 486
DpnII GATC 1 cut(s) 484
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
EciI GGCGGA 1 cut(s) 15
Eco24I GRGCYC 1 cut(s) 103
Eco81I CCTNAGG 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 427
EcoT38I GRGCYC 1 cut(s) 103
FaeI CATG 2 cut(s) 368, 419
FaiI YATR 3 cut(s) 306, 366, 417
FaqI GGGAC 1 cut(s) 340
FatI CATG 2 cut(s) 364, 415
FblI GTMKAC 1 cut(s) 226
FokI GGATG 3 cut(s) 139, 282, 444
FriOI GRGCYC 1 cut(s) 103
GsuI CTGGAG 1 cut(s) 114
Hin1II CATG 2 cut(s) 368, 419
HinfI GANTC 2 cut(s) 248, 438
Hpy166II GTNNAC 2 cut(s) 227, 370
Hpy188III TCNNGA 3 cut(s) 326, 334, 476
Hpy8I GTNNAC 2 cut(s) 227, 370
HpyAV CCTTC 1 cut(s) 113
HpyCH4V TGCA 1 cut(s) 435
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 25, 98
HpyF3I CTNAG 2 cut(s) 6, 30
Hsp92II CATG 2 cut(s) 368, 419
Kzo9I GATC 1 cut(s) 484
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 6 cut(s) 63, 78, 311, 414, 441, 461
LweI GCATC 1 cut(s) 422
MaeIII GTNAC 1 cut(s) 65
MalI GATC 1 cut(s) 486
MboI GATC 1 cut(s) 484
MboII GAAGA 1 cut(s) 464
MfeI CAATTG 1 cut(s) 230
MhlI GDGCHC 1 cut(s) 103
MluCI AATT 4 cut(s) 230, 237, 382, 513
MnlI CCTC 5 cut(s) 89, 163, 309, 462, 480
MseI TTAA 4 cut(s) 42, 47, 192, 264
MspA1I CMGCKG 1 cut(s) 10
MspR9I CCNGG 1 cut(s) 429
MunI CAATTG 1 cut(s) 230
MvaI CCWGG 1 cut(s) 429
MwoI GCNNNNNNNGC 3 cut(s) 16, 25, 98
NdeII GATC 1 cut(s) 484
NlaIII CATG 2 cut(s) 368, 419
NlaIV GGNNCC 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 65
NspV TTCGAA 1 cut(s) 106
PfeI GAWTC 2 cut(s) 248, 438
Psp6I CCWGG 1 cut(s) 427
PspGI CCWGG 1 cut(s) 427
PspN4I GGNNCC 1 cut(s) 100
PstNI CAGNNNCTG 1 cut(s) 392
PvuII CAGCTG 1 cut(s) 10
SaqAI TTAA 4 cut(s) 42, 47, 192, 264
Sau3AI GATC 1 cut(s) 484
ScrFI CCNGG 1 cut(s) 429
SduI GDGCHC 1 cut(s) 103
SetI ASST 3 cut(s) 12, 449, 484
SfaNI GCATC 1 cut(s) 422
SfuI TTCGAA 1 cut(s) 106
SmlI CTYRAG 1 cut(s) 334
SmoI CTYRAG 1 cut(s) 334
Sse9I AATT 4 cut(s) 230, 237, 382, 513
SsiI CCGC 2 cut(s) 26, 260
SspI AATATT 1 cut(s) 409
StyD4I CCNGG 1 cut(s) 427
TaqI TCGA 1 cut(s) 106
TasI AATT 4 cut(s) 230, 237, 382, 513
TfiI GAWTC 2 cut(s) 248, 438
Tru1I TTAA 4 cut(s) 42, 47, 192, 264
Tru9I TTAA 4 cut(s) 42, 47, 192, 264
TscAI CASTG 1 cut(s) 393
TseFI GTSAC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 1 cut(s) 143
TspRI CASTG 1 cut(s) 393
XmiI GTMKAC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.