Rmu_sc0002132.1_g000045

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002132.1
OG0000890
Physical Location & Seq
Reverse (-)
183756 .. 184058
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002132.1_g000045.1.cds

Sequence Viewer

Length: 303 bp
atgatggttgaaagtgattctaaagttctagttaacatgatcaggcagggtgtgaatgatttacatccttctaaaactcttattgactgctgccagcttttgattagacagtttcctcattgtgaggttagctgccgcatttatcgtgagattaatcaggttgctgatgtgctttctaaatctggagtggatgttgggattgaagtgcatcttatggagcaacctcctccacaagctaattccttcttgttggatgactggtgtgaatatcctagatataggacagtagttcctagtgtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

100

Amino Acids

11.45

Weight (kDa)

5.19

Isoelectric Point (pI)

32.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 136
AgsI TTSAA 2 cut(s) 11, 203
AluBI AGCT 3 cut(s) 97, 132, 236
AluI AGCT 3 cut(s) 97, 132, 236
ApeKI GCWGC 2 cut(s) 90, 132
AseI ATTAAT 1 cut(s) 153
BbvI GCAGC 2 cut(s) 77, 119
BclI TGATCA 1 cut(s) 39
BfaI CTAG 3 cut(s) 29, 273, 294
BisI GCNGC 3 cut(s) 91, 133, 136
BlsI GCNGC 3 cut(s) 92, 134, 137
BmsI GCATC 1 cut(s) 217
BpmI CTGGAG 1 cut(s) 204
BsaBI GATNNNNATC 1 cut(s) 63
BsaXI ACNNNNNCTCC 2 cut(s) 177, 207
Bse1I ACTGG 1 cut(s) 263
Bse8I GATNNNNATC 1 cut(s) 63
BseGI GGATG 3 cut(s) 64, 196, 259
BseJI GATNNNNATC 1 cut(s) 63
BseNI ACTGG 1 cut(s) 263
BseRI GAGGAG 1 cut(s) 216
BseXI GCAGC 2 cut(s) 77, 119
Bsp143I GATC 1 cut(s) 39
BspACI CCGC 1 cut(s) 136
BsrI ACTGG 1 cut(s) 263
BssMI GATC 1 cut(s) 39
Bst4CI ACNGT 2 cut(s) 111, 286
BstC8I GCNNGC 1 cut(s) 95
BstF5I GGATG 3 cut(s) 64, 196, 259
BstKTI GATC 1 cut(s) 42
BstMBI GATC 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 77, 119
BtsCI GGATG 3 cut(s) 64, 196, 259
Cac8I GCNNGC 1 cut(s) 95
CviAII CATG 1 cut(s) 37
CviJI RGCY 3 cut(s) 97, 132, 236
CviKI_1 RGCY 3 cut(s) 97, 132, 236
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
FaeI CATG 1 cut(s) 40
FaiI YATR 3 cut(s) 38, 215, 279
FalI AAGNNNNNCTT 2 cut(s) 195, 227
FatI CATG 1 cut(s) 36
FbaI TGATCA 1 cut(s) 39
Fnu4HI GCNGC 3 cut(s) 91, 133, 136
FokI GGATG 3 cut(s) 51, 203, 266
Fsp4HI GCNGC 3 cut(s) 91, 133, 136
FspBI CTAG 3 cut(s) 29, 273, 294
GluI GCNGC 3 cut(s) 91, 133, 136
GsuI CTGGAG 1 cut(s) 204
Hin1II CATG 1 cut(s) 40
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HinfI GANTC 1 cut(s) 17
HpaI GTTAAC 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 34
Hpy188III TCNNGA 2 cut(s) 146, 183
Hpy8I GTNNAC 1 cut(s) 34
HpyAV CCTTC 2 cut(s) 78, 253
HpyCH4III ACNGT 2 cut(s) 111, 286
HpyCH4V TGCA 1 cut(s) 208
Hsp92II CATG 1 cut(s) 40
Ksp22I TGATCA 1 cut(s) 39
KspAI GTTAAC 1 cut(s) 34
Kzo9I GATC 1 cut(s) 39
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 6 cut(s) 28, 32, 107, 143, 168, 244
Lsp1109I GCAGC 2 cut(s) 77, 119
LweI GCATC 1 cut(s) 217
MaeI CTAG 3 cut(s) 29, 273, 294
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MluCI AATT 1 cut(s) 238
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 4 cut(s) 118, 126, 234, 237
MseI TTAA 2 cut(s) 33, 153
NdeII GATC 1 cut(s) 39
NlaIII CATG 1 cut(s) 40
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 3 cut(s) 92, 134, 137
PshBI ATTAAT 1 cut(s) 153
SaqAI TTAA 2 cut(s) 33, 153
SatI GCNGC 3 cut(s) 91, 133, 136
Sau3AI GATC 1 cut(s) 39
SetI ASST 6 cut(s) 99, 129, 134, 162, 226, 238
SfaNI GCATC 1 cut(s) 217
Sse9I AATT 1 cut(s) 238
SsiI CCGC 1 cut(s) 136
SspMI CTAG 3 cut(s) 29, 273, 294
TaaI ACNGT 2 cut(s) 111, 286
TasI AATT 1 cut(s) 238
TauI GCSGC 1 cut(s) 138
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 2 cut(s) 33, 153
Tru9I TTAA 2 cut(s) 33, 153
TseI GCWGC 2 cut(s) 90, 132
VspI ATTAAT 1 cut(s) 153
XspI CTAG 3 cut(s) 29, 273, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.