Rh7CG313500

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000890
Physical Location & Seq
Forward (+)
33329149 .. 33329607
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG313500.1

Sequence Viewer

Length: 459 bp
ATGTTTCTTTCTCTACTTTATCTTCAGATTTTGAGGCCTCGCTGGCTAGCTGCTCGTCTGAAAGCTAAAGCTCACAACTCTAAATCTACTCCTTGGTTTCTTACTTTCTGCATCAGCTTGTGGTTTCTTTTGAAGTGGAGATGTAAACTTATGTTTGGTGCTGCTTTTTCACCTGCCCAATTGGCTGCAATGCAATACGATGGAAATTCCTCCCAGGCAAAATTGGAAATGACCACTGTTTTGCATTGGTGCCCTCCTACTATTTGTACTTTCAAGCTCAATACTGATGAGAGTAAAAGTTCAGGGGATGAATCTCTTACTGCTGGGGGTGTTATTAGGGATTCAAATGGTATTTGGACTCTACGCTTTTCTGCTAATGTTGGGACTGGTTCTGTGCTTGTAGTGGGGGTTGTTTCATGGATTAAACTTAGCCTGGAAAACTGGTGTTCATGCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

152

Amino Acids

16.99

Weight (kDa)

9.23

Isoelectric Point (pI)

32.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 181
Acc36I ACCTGC 1 cut(s) 181
AccB1I GGYRCC 1 cut(s) 249
AcsI RAATTY 1 cut(s) 205
AcuI CTGAAG 1 cut(s) 8
AfaI GTAC 1 cut(s) 268
AgsI TTSAA 3 cut(s) 133, 274, 345
AjnI CCWGG 2 cut(s) 213, 432
AluBI AGCT 5 cut(s) 50, 65, 71, 117, 277
AluI AGCT 5 cut(s) 50, 65, 71, 117, 277
AoxI GGCC 1 cut(s) 35
ApeKI GCWGC 4 cut(s) 50, 161, 185, 453
ApoI RAATTY 1 cut(s) 205
ArsI GACNNNNNNTTYG 2 cut(s) 223, 255
AsuHPI GGTGA 1 cut(s) 162
AsuNHI GCTAGC 1 cut(s) 46
BaeGI GKGCMC 1 cut(s) 254
BanI GGYRCC 1 cut(s) 249
BbvI GCAGC 4 cut(s) 37, 148, 172, 440
BccI CCATC 1 cut(s) 194
BciT130I CCWGG 2 cut(s) 215, 434
BfaI CTAG 1 cut(s) 47
BfuAI ACCTGC 1 cut(s) 181
BglI GCCNNNNNGGC 2 cut(s) 43, 182
BisI GCNGC 4 cut(s) 51, 162, 186, 454
BlsI GCNGC 4 cut(s) 52, 163, 187, 455
Bme1390I CCNGG 2 cut(s) 215, 434
BmiI GGNNCC 1 cut(s) 251
BmrFI CCNGG 2 cut(s) 215, 434
BmsI GCATC 1 cut(s) 120
BmtI GCTAGC 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 92, 213
Bse1I ACTGG 2 cut(s) 391, 446
Bse3DI GCAATG 1 cut(s) 195
BseBI CCWGG 2 cut(s) 215, 434
BseDI CCNNGG 2 cut(s) 92, 213
BseGI GGATG 1 cut(s) 313
BseMI GCAATG 1 cut(s) 195
BseNI ACTGG 2 cut(s) 391, 446
BseSI GKGCMC 1 cut(s) 254
BseXI GCAGC 4 cut(s) 37, 148, 172, 440
BseYI CCCAGC 1 cut(s) 323
BshFI GGCC 1 cut(s) 37
BshNI GGYRCC 1 cut(s) 249
BslFI GGGAC 1 cut(s) 397
BsmFI GGGAC 1 cut(s) 397
BsnI GGCC 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 254
BspANI GGCC 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 251
BspMI ACCTGC 1 cut(s) 181
BspOI GCTAGC 1 cut(s) 50
BspT107I GGYRCC 1 cut(s) 249
BsrDI GCAATG 1 cut(s) 195
BsrI ACTGG 2 cut(s) 391, 446
BssECI CCNNGG 2 cut(s) 92, 213
BssT1I CCWWGG 1 cut(s) 92
Bst2UI CCWGG 2 cut(s) 215, 434
Bst4CI ACNGT 1 cut(s) 238
BstC8I GCNNGC 2 cut(s) 44, 48
BstDEI CTNAG 1 cut(s) 428
BstF5I GGATG 1 cut(s) 313
BstMWI GCNNNNNNNGC 2 cut(s) 43, 182
BstNI CCWGG 2 cut(s) 215, 434
BstSCI CCNGG 2 cut(s) 213, 432
BstSLI GKGCMC 1 cut(s) 254
BstV1I GCAGC 4 cut(s) 37, 148, 172, 440
BsuRI GGCC 1 cut(s) 37
BtsCI GGATG 1 cut(s) 313
BtsIMutI CAGTG 1 cut(s) 234
BveI ACCTGC 1 cut(s) 181
Cac8I GCNNGC 2 cut(s) 44, 48
Csp6I GTAC 1 cut(s) 267
CviAII CATG 2 cut(s) 417, 450
CviJI RGCY 9 cut(s) 37, 46, 50, 65, 71, 117, 185, 277, 432
CviKI_1 RGCY 9 cut(s) 37, 46, 50, 65, 71, 117, 185, 277, 432
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 1 cut(s) 428
Eco130I CCWWGG 1 cut(s) 92
Eco147I AGGCCT 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 8
EcoRII CCWGG 2 cut(s) 213, 432
EcoT14I CCWWGG 1 cut(s) 92
ErhI CCWWGG 1 cut(s) 92
FaeI CATG 2 cut(s) 420, 453
FaiI YATR 3 cut(s) 152, 418, 451
FaqI GGGAC 1 cut(s) 397
FatI CATG 2 cut(s) 416, 449
Fnu4HI GCNGC 4 cut(s) 51, 162, 186, 454
FokI GGATG 1 cut(s) 320
Fsp4HI GCNGC 4 cut(s) 51, 162, 186, 454
FspBI CTAG 1 cut(s) 47
GluI GCNGC 4 cut(s) 51, 162, 186, 454
GsaI CCCAGC 1 cut(s) 327
HaeIII GGCC 1 cut(s) 37
Hin1II CATG 2 cut(s) 420, 453
HinfI GANTC 3 cut(s) 311, 341, 358
HphI GGTGA 1 cut(s) 162
Hpy166II GTNNAC 1 cut(s) 146
Hpy188I TCNGA 2 cut(s) 27, 60
Hpy8I GTNNAC 1 cut(s) 146
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4V TGCA 4 cut(s) 111, 188, 193, 244
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 182
HpyF3I CTNAG 1 cut(s) 428
Hsp92II CATG 2 cut(s) 420, 453
Lsp1109I GCAGC 4 cut(s) 37, 148, 172, 440
LweI GCATC 1 cut(s) 120
MaeI CTAG 1 cut(s) 47
MboII GAAGA 1 cut(s) 14
MfeI CAATTG 1 cut(s) 179
MhlI GDGCHC 1 cut(s) 254
MluCI AATT 3 cut(s) 179, 205, 221
MlyI GAGTC 1 cut(s) 352
MnlI CCTC 4 cut(s) 27, 48, 220, 264
MseI TTAA 1 cut(s) 423
MspR9I CCNGG 2 cut(s) 215, 434
MunI CAATTG 1 cut(s) 179
MvaI CCWGG 2 cut(s) 215, 434
MwoI GCNNNNNNNGC 2 cut(s) 43, 182
NheI GCTAGC 1 cut(s) 46
NlaIII CATG 2 cut(s) 420, 453
NlaIV GGNNCC 1 cut(s) 251
PaqCI CACCTGC 1 cut(s) 181
PceI AGGCCT 1 cut(s) 37
PfeI GAWTC 2 cut(s) 311, 341
PkrI GCNGC 4 cut(s) 52, 163, 187, 455
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
Psp6I CCWGG 2 cut(s) 213, 432
PspFI CCCAGC 1 cut(s) 323
PspGI CCWGG 2 cut(s) 213, 432
PspN4I GGNNCC 1 cut(s) 251
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 4 cut(s) 51, 162, 186, 454
SchI GAGTC 1 cut(s) 352
ScrFI CCNGG 2 cut(s) 215, 434
SduI GDGCHC 1 cut(s) 254
SetI ASST 6 cut(s) 52, 67, 73, 119, 175, 279
SfaNI GCATC 1 cut(s) 120
Sse9I AATT 3 cut(s) 179, 205, 221
SseBI AGGCCT 1 cut(s) 37
SspMI CTAG 1 cut(s) 47
StuI AGGCCT 1 cut(s) 37
StyD4I CCNGG 2 cut(s) 213, 432
StyI CCWWGG 1 cut(s) 92
TaaI ACNGT 1 cut(s) 238
TasI AATT 3 cut(s) 179, 205, 221
TatI WGTACW 1 cut(s) 266
TfiI GAWTC 2 cut(s) 311, 341
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 1 cut(s) 241
TseI GCWGC 4 cut(s) 50, 161, 185, 453
TspDTI ATGAA 3 cut(s) 324, 405, 438
TspRI CASTG 1 cut(s) 241
XapI RAATTY 1 cut(s) 205
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.