FvH4_2g13620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000582
Physical Location & Seq
Forward (+)
11900891 .. 11917127
16237 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13620.t4

Sequence Viewer

Length: 8109 bp
ATGTACGGCCGTCCTTCTCGCTCCTCCGGCGCCGCATGGGGTCAGGCCTCGTCGGTTCCTCAGCCTCTGAATCCTAATTTCTCACTCCAAAACCCCAACACTCCGTATCTCTACCCTATAAACCCTGCCTTTCAAGCTTACCGGAACTTCTCCCCCAACAATCTCCCGCCGCCGCAAAACCCTAGCTTCGTTCCCCGGCAGTTCTCCAATTCGCCGTTCCGGCCTCCTCCGCCTCAGATCTCCAATGAACTGCTGGAGAAAGTCGACCGCGCCGTGGCGAAGGCTCGGTCGGACCTTATTGCCGCCGGCGACGGCGTCTCGGCGTGGAAGGTTTCGCAGTCGGCGCTTATGATGCTCCAGATTGATGGCTGGGGCTCTTTAGGGTTTCAGATGCAGCAGGTGCCGTCTCTACAGCGTCTGATGTTCACTGAAGGCAAGATAAATGCATTTATCCAGTGTTTTGTTGCGGTTCGAAGAATTTCTTCATTATATGATATGGAAGTAGCAATCTGCAAGAATGAGGGCATCGAGAAGTTTGAAGAGCTAGGATTGGGACCGTTGGTGCGACATCCACTTGTTTTGCATTATTACTCAGTGAAGTCTAATACTAATAAAGTTTATAAGATTACTAGCGATGAGATAATATCTTTACTCTCTGCCTACATGGATACCTGCAAGAACAAAGAAATTAAGATTGAAGAATTTTTAGATTTTATTGTAAAGAAGCGATCAGTTGCAAGCAAGGAAGAGCTTGGAATACGAATTCAGAGCATCGGGATGCATATATCTGCTATCCGCGCTGTGAAGAAAACTGAACCGTCTTTCAAGCAAACATCTAAGAAAGATAAGAAGAAGCGTTACTTCTCATTGAAAAGGCAATTAGATGAACGTTTCAGCGACATTTCTCAGCGTGTTGAATCATTTTCCTCTGTACAGAAGTTTTGTGGCGAGCACATTAGGTTTGATTCTTCAAAAGACTCGGAGGCTGATAGTAGTGATGATGATGTATCTGAAGATGGTGATGAAGTTAATGACCATTCGACAGGTAATCAAGTTAAATTGTCATCTAAATCTGTTACAAGCTCTGACCGAGCTAGCAGATGTCCTTACCCTTCTGAACTAGAAGAGAAGAAACGGCTAGGATTGAGCCAGCTTTCACCAGCTAGTTGCTCCCAAAAGCAGAGTGAGAGTAATCAGTCAGCTAAAAAGAAAAGAAACTATGAAGATGTAAACAGTGCAATTTCAGTGCCTGCCAAATTGCGTAAGAGAGATAAGGTAGGAGAAGATGCTCCTCGAACAAAGAATGGCCGGAAAACCAATGAGGTTAGCAATTCGGATGAAAATGATCTCTCAATTACCAATACATGTTTGAAGATCTTCATTACAACTTGGAAGGAAGCATGTCGGGAGAACACTGTGGCTGAGGTACTTGATAGATTACTGCAGCTTAATAACACAGACGCTGAGAAGAAAACAGAAATCAAGTCAATGTTTTCCTTGGATCCATTAATTGGATTGTTAAATGTTGCTGTCTCATCTATCAAATCCGGATTGTGGGATAGCATGTATGATACGTTCCAAACTGTTGGTCAGTTAACTGACAATCGTCCAGATAACTGTCCTGAATATGTGAACATAGATGTTGAACCAAGTATTAAAGATGAGAAGAGTACCAAGGATGCACCAGTCATTCCTGAACATGCTGTTGAGCACAGGCACAGTGTTTCTGTTGAGGACATAATCAGGAAACTTACGATGTATTTTGAGATTGATCAAGGTGTACATGGCAATGGTAGATCACTCCAGGAGAAAATATGTACCTTCTTGACAAAGCTTTGCAGTTGTGAACTATGGTTAGTGGAAGAATTTTCTGTCAAGGAGTTTAGATCTCTTGGTCATGGAGAGTTTTTACAGTTCTTAGAAAATTATGCAGGGCTACTTCCACAAGAGCTGTGCAAGTACCTGACTGATGATGTAATTGGGAAGTGCCCTTTGGAAGTCTGCATGCTTCAGCCCCATTTGGTTGTTTTACTATCTCAAGCGTTTAATAGTTTATGGGAGGATGAAAATATCACAAAACAGGAAATTATGTTGCTGCTTAGGAAGCAATTCCCATCGGTCAGTTTCAAAATTATTGAAAATGGTTCAGTAGAAGACTTTTTAAGCATAGTGGGAAAACATAAAGATGATGTGATTTCCAAATGTGTTCTATTCTCAATGGCATTAAATGGCACTAGCTATGCTATTGACTCATCAGTACATTACGAGAACGTCCTATTGAAAAGCATGACAGTGAGTTCTGACAGTTGCCAGAAAGATGTATCTGTTACATCCAAGGATGCAATTAAAGTCTTAGCTAGGGCACCAATGATGTCCGACTTAAACTTATGGTCACACTGGGACCTTTTGTTTGCTCCTTCACTCGGTCCTCTTATACCATGGTTATTAAATGAAGTTAACACAGATGAGTTGTTGTGTTTGGTGACCAAAGATGGAAAAGTCATTCGGTTAGACCAATCAGTTACTGTAGATTCATTTGTGGAAGCTGCCCTTCAAGGATCATCTTTTGAAACAGCACTGAAAATGTTATCTCTATTTTCAATAGTTGGAGGAGAAAAACATGTTCCTGTGCCCCTTTTGAAAATCCACATACAACGTGCATTTGAAGTCATTTTGAAAAATTTTGTAGATAACATGGAAGTACATCACGATAAGTATGGAAAAGCATTGTTTGGACAGCAAATGGTTGGTGAAGATGCTGCTGGTAAATTATCACACAGAGACTTACAGAAGACAGATATTGGAAAACCCATTATATCAAGATTTTTTCTTGAATGTCTTGGGTATCTTCCTGCAGAGTTTCGTGCGTTTGCTGCAGATTTATTGCTTTCGGGAATGCAATCTGTTGTCAAACATGCGCCTTCAGGTATATTGAGTGAGTGCAGTCAATTGGAGCAACGTATAATGCTTCATGAAGTTGGCTTGTCTCTTGGTATAGCTGAGTGGATTAATGATTACTACGCATGTCTTACCAATGATACCACTCAGTCATTCATGTCTGCGGATTCATGTACCAACGCCGTTGGACATGAAATGGGGTTAGGTTCAAAGCCCTTGCAAGATGTTTCAGATGCGTTTGACACTTCTGGAGGAAGCATGGTTGGATCTGTTAGGGAAGATGTGCAGGAAGTTGGATGTACTGATGTCTCTCTGAAGATTGGTGGTGCAGAAACCGGCAATGAGAGAGCTGGTAGTGGTTACACTCAACAATCTGCCAAAATTAGTGAACATGAAGATGCATCCGAGGTGATTGAGTCAATCAGAAGAGATGAGTTTGGTCTTGATTCAAGCCAAACAACTTCTGAAAGTATCATGTTGAAGAAGCATCATGCTCGTCTAGGGAGAGCTCTTCATTGTCTTTCACAGGAATTGTATTCTCAGGATTCACACTTTCTTCTTGAGCTGGTTCAAAATGCAGATGATAATACATACCCAACATGTGTAGAACCAACTTTAACGTTCATTCTTCAAGACTCAGGTATCGTTGTTTTAAATAATGAGCAAGGGTTCTCTGCTGAGAACATTAGAGCACTTTGTGATGTTGGCAGTTCTACCAAGAAAGGATCTAATGCTGGCTATATTGGGCGGAAGGGCATCGGTTTCAAATCTGTGTTTCGGGTCACAGATGCTCCAGAGATTCATTCCAATGGATTCCATATCAAGTTCGATATAAGTCAGGGTCAGATTGGATTTCTTTTGCCAACAGTTGTACCTCCTTGCAATGTTGAAATGTTCAGTAGGCTGACTTCTAGTGACAGTGATCAACTGGATAATAATTTCTGGAACACCTGTATTGTTCTTCCTTTCAGATCGAAGTTTTCAGATGGATCTGTCATGAAAGGCATTATAAATATGTTTTCAGATCTCCATCCATCTATATTACTCTTCCTTCACCGCCTCCAGTGTATAAAGTTTAGAAACTTGCTCGATAATTCACTTACTGTCATGAGAAAAGAAACGGTGGGAGATGGTATCGTAAAGGTTTCACATGGGAAAGAGATAATGACATGGTTCTTAATATCTCAGAAATTGCAAGCAGATTTTATGCGTAGCGATGTACAAACAACAGAAATCTCCATAGCATTTACATTGAAAGAATTGGAGAATGGTGTTTATGGACCAGATTTAGGGCAACAGCCTGCTTTTGCATTTCTTCCTTTAAGAACCTATGGCCTGAAGTTTATTCTTCAGGGTGATTTTGTTCTTCCCTCATCTAGAGAGGAAGTGGATGGAGACAGTCCGTGGAACCAGTGGCTTCTGTCAGAATTTCCTGGTTTATTTGTCAATGCTGAGAGGTCTTTTTGTTCTCTTCCTTGCTTTAAAGAGAACCCCGGGAGAGCAGTGGCGGCTTATATGTCCTTTGTTCCACTTGTTGGGGAAGTGCATGGTTTTTTTTCTTCTCTTCCTCGATTAATCATTTCTAAATTACGTATGTCGAATTGCTTACTCCTGGAAGGAGGAAATAACGAGTGGGTTCCTCCTTGCAAGGTCCTAAGAGGTTGGAATGAGCAGGCCCGTTTGCTTCTACCGGATTGTTTACTAAGGCAGCATCTTGGCCTTGGGTTGTTGGAAAAAAGTATAGTTCTGCCTGATCCACTTGCAAGAGCACTTGGTATTGCAGAATATGGACCCAAAATTCTGGTTCAAGTTATGGACTCCTTGTGTCGTTTGCAAAATGGCCTCTTATCAATGGGACCTGGTTGGTTAACTTCTTGGCTAAGTGAACTGTATGCAATGTCATTCAATGCTTCTGTGGAAACATCATTTGACTCTGGACATGGAATGGATTTGATAGAAGAGCTCCGAAAAATTCCATTCATTCCTCTTTCAGATGGTACATATGGTGCAGTAGACAAAGACCCAATTTGGTTACATTTTGATGCCTTGAGCACTGGGTTTGAGGATCAGCATGGACTTGAGTCTTTTCCTAAATTATATGCTAATCTTCGTATCGTAAGTCCTGCCTTCCTTTCTACATCATGTGCAGATATGCCATCCATGGATGTGACTACAGTTGACAAACAAATACGCATGCTTCGTAGAATTGGTGTCCAGCAGTTGTCTGCACATGAGATTGTCAAGCTACACATCTTGCCAGCTATATCTGATGACAGAATTGCAGGTAGGGATAAGAATATGATGACAGAATATCTCTGTTTTGCAATGGTCCACCTTCAGTCGACCTGCTCCGATTGTCATGGTGAAATGGAATACATAATCTCAGAATTACGAAATAAAGCCTATATACTAACAAATCATGGCTTTAAACGACCTGCGGATATATCCATTCATTTCAGTAAGGACTTTGGAAATCCTATAGACATAAATAAGTTGATAAATATGGTGGATATGATGTGGCATGAGGTTGACATCTCCTATTTGAAGCATCCAGTAACAAAGTCACTCCAATGTGGACTAATGAAGTGGAGGCAGTTTTTCCAGCAAATTGGCATTGTGGATTTCGTTAAAGTAGTTCATGTTGAGAAGGGATTTAACGATACGTGTAAAGACTTGATTTCTCTTGGATCAAATGTCACAGATTGGGAGTCCCCTGAATTGGTCGATTTATTGTCCCTGTTGACCAGAAATGGTGACAAAAAAGGCTGTCAATATCTTTTGCAGGTGCTTGATAGTTTATGGGATGAATGCTATCTTGAAAAGGCTACAGGCTACTGTGCTTCTAAAGATGTAGCAGATAAAAAGGCCTTTAGATCTTCATTTATAAGCTGCATCTGTGATGCACAATGGGTAGCTTCAACAATGGATGATGCGCTCCACTATCCTAGAGATTTATACTACGACTGTGATGCAGTGCGCTCGGTTCTTGGTCCGTATGCTCCATTTTCTGTTCCAAAGATAGGGAGCACAAAGTTTGCCAGTGCTATTGGGTTTAAGACAGTAGTTTCTCTTGATGATGGTCTAGAGGTATTGAAACTATGGAGATGTGAGAACCCATTCAGGGCCAGCATAGCGCAAATGTCAAAATTTTACACATTAATCTGGAATGAAATGGCTTCTTCGAAGCTAAGAATTGTGGAAGAGTTCCATTCCAAACCTTCTATTTTTGTTCCGTATGCATCTAGCTCAAGGCATGAGGATGTGGTGTCTGGTATATTTTTGTCCCCTCAGGAGGTATATTGGCATGATTCGACTTCTTTGGTGGACCAAATCAAGCATATACATCCTCAGTGCAGCTCAACAGGTGTTACTCATGGCCCCTTGATCAAGACACTGTGCAACTTTTATCCTGGCCTTCATGACTTCTTTGTTGATGGATGTGGAGTACCTGAGACCCCTCCTCTCCGTAGCTACCTACAGATTTTACTGCACTTATCAAAGGTTGCTCTGCCCTCGCAAGCAGCTAATGCCGTTTTTCAAGTCTTTCTGAAGTGGACTGATGGGCTGAAATCAGGATTGAGCCCTGAGGATATTGTTTACATTAGAGATTATCTTAAGAAGATCGATTGCATGGTGCTTCCTACTGTACATGATAAGTGGGTTTCTTTACATCCATCATTTGGTCTTGTGTGCTGGTGTGATGATAAGAAATTAAGCAAGCAGTTTAAGCATTTGGATGGTATTGATTTTTTGTACTTTGGTCAATTGACCAAGGACAATGAAGAGATTCTGTGTACAAAAATGTCAAACCTCATGCAAACTTTAGGGATTCCTGCTCTTTCACAGGTTGTGACTCGCGAGGCAATATATTATGGTCTGCAAGACAGTAGCTACGAAGCTGGATTGGTAAATTCAGCTCTCCCATATGTACAGCGCTACTTGCATACTCTACACCCAGATAAATATTCTGAACTCAAGAAGTCTGGATTTGATATACTAAATTGTTTGCAAGTAGTAGTTGTTGATGAGCTGTACTATCAAAATGTCATAGAAGTTGCTGGCAGTGAATCCAAGAAGCGGGTTGCATGTAGTTGTCTTCTAAAGGGTAGCATGTTGTATACAACCCGAGCTACAGATTCTCACACATTATTTATGGAGCTTTCTCGTTTGTTTTTTAATGGTAAGCCTGAACTGCATTTGGCGAATTTCCTTCATATCATCACAACCATGGAAAAATCGGGTTCGAACGAGGAGCAGATAGAGTTATTTATCCTCAATAGCCAAAAGGTGCCAAAGCTTCCTGATGGGGAATGTGTGTGGTCCCTTTCATCGTTGCACTCATTGACTGAGGATAATAAATCACTCCAGACAAGTAATACTTCAGCAGAAGTAAATGAACAAAACAGTTCGAAACCCAAAAGGAAAGCAGAAAACTGGCCGCCTGTTGATTGGAAAACTGCACCAGGGTTTGCTTACGCTCGTGCACATGGTTTTAAGACACAGCCACCAGCGTTACAGCCCTGCGGCGCCTTACCAAATAAGATGGATGGTGATTCTGAAGGAATTGTTGGACAAATAGATAATTCAGCTCACATTTCTGTGGATACTAGTTGGTCCTTGGAAGATTATTCAGCAGCTGGGTCTTTAGCTTTGGCAGACAATAATGATTTGCTAGAACATCGCGGTGAACATTTTAATGACACTTGCTTTCCTACTCATGTTGAATTTGATCCCATTAATCTAGGTCTTGTTTCTCACCCTCCAGACTTGGGTTCATCCAGTGTTGGCAAAAGAGAACAGCTTAGATATGGCACGCCCAATGCTTCACAAGCAATTATGACTGGGAGACTTGGAGAGCATGTTGCTTTTAAATATTTTGTTGAGAAAGCCGGCGAGTCAGCAGTTAAGTGGGTTAATGAGCACAATGAAACAGGGCTACCATATGACATAGTTCTGGGAGAGAACAAGGAGTACGTTGAAGTGAAAGCAACAAAATCTGCAAGAAAAGACTGGTTTGAAATATCAATGAATGAACTGCAATTTGCAGTTGAGAAAGGTGAAGCGTTCAGCATAGCTCATGTCATGCTATTAGATAATAATGTTGCAAAGGTCAGAGTGTACAACAATCTGGCAAAGTTATGCCAACTTCGCCGATTGAAGTTAGCTGTATTGATTCCTGTTCAGCCGAAGGAGTTCACCATTGTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3883

Protein Analysis

2703

Amino Acids

302.28

Weight (kDa)

5.72

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SACS PF25794 1145 - 1329 2.2e-09 Sacsin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08300 AT1G08300 AT1G08300 AT4G13750
fragaria_vesca FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_4g13620 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660
malus_domestica MD04G1012800.v1.1 MD04G1012900.v1.1 MD04G1013100.v1.1 MD04G1013300.v1.1
prunus_persica Prupe.1G159000_v2.0.a1 Prupe.1G159100_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G358100_v2.0.a1
pyrus_communis pycom04g01020 pycom04g01030
rosa_chinensis RchiOBHm_Chr4g0414341 RchiOBHm_Chr4g0414351 RchiOBHm_Chr6g0275261 RchiOBHm_Chr7g0213881 RchiOBHm_Chr7g0213891
rosa_laevigata RLG00000008153 RLG00000008155 RLG00000013477
rosa_multiflora Rmu_co8510163.1_g000001 Rmu_sc0004087.1_g000027 Rmu_sc0005196.1_g000014 Rmu_sc0005558.1_g000005 Rmu_sc0005558.1_g000006 Rmu_sc0008100.1_g000005 Rmu_sc0008560.1_g000005
rosa_roxburghii Rroxscaffold_5G00358210 Rroxscaffold_5G00358220 Rroxscaffold_7G00187920 Rroxscaffold_7G00187930 Rroxscaffold_7G00193450
rosa_rugosa Rorug04G0127100 Rorug04G0127200 Rorug04G0127300 Rorug04G0127400 Rorug06G0090600
rosa_samantha Rh4AG185200 Rh4AG185300 Rh4AG185500 Rh4BG184700 Rh4BG184800 Rh4CG198000 Rh4CG198100 Rh4DG182400 Rh4DG182600 Rh6AG204100 Rh6BG207000 Rh6CG209600 Rh6DG200000 Rh7AG277400 Rh7CG296400 Rh7CG296500
rosa_wichuraiana Rw4G015850 Rw4G015860 Rw6G017730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 621, 3908, 5783
AarI CACCTGC 2 cut(s) 388, 5671
Acc36I ACCTGC 6 cut(s) 388, 680, 5171, 5252, 5341, 5671
AccB1I GGYRCC 5 cut(s) 29, 400, 2362, 7186, 7424
AccB7I CCANNNNNTGG 3 cut(s) 1511, 4433, 6578
AccI GTMKAC 4 cut(s) 264, 4911, 5240, 7016
AccII CGCG 4 cut(s) 270, 798, 6756, 7581
AccIII TCCGGA 1 cut(s) 1547
AclI AACGTT 2 cut(s) 889, 3518
AcoI YGGCCR 3 cut(s) 7, 1306, 7334
AcyI GRCGYC 3 cut(s) 30, 315, 7425
AdeI CACNNNGTG 1 cut(s) 3596
AfeI AGCGCT 1 cut(s) 6833
AflII CTTAAG 1 cut(s) 6512
AflIII ACRYGT 4 cut(s) 1364, 2620, 3497, 5561
AhlI ACTAGT 1 cut(s) 7505
AjnI CCWGG 6 cut(s) 1803, 4330, 4509, 4756, 6307, 7360
AjuI GAANNNNNNNTTGG 6 cut(s) 200, 232, 1976, 2008, 7449, 7481
Alw26I GTCTC 9 cut(s) 322, 411, 1537, 2775, 2991, 3211, 4287, 6344, 7738
Alw44I GTGCAC 1 cut(s) 7380
AlwNI CAGNNNCTG 6 cut(s) 67, 418, 1250, 1463, 2525, 7535
Ama87I CYCGRG 2 cut(s) 4391, 7023
Aor13HI TCCGGA 1 cut(s) 1547
Aor51HI AGCGCT 1 cut(s) 6833
ApaLI GTGCAC 1 cut(s) 7380
ArsI GACNNNNNNTTYG 6 cut(s) 272, 304, 1573, 1605, 2393, 2425
AseI ATTAAT 5 cut(s) 1508, 3009, 4472, 6056, 7635
Asp700I GAANNNNTTC 7 cut(s) 478, 481, 1376, 2108, 6014, 6684, 8090
AsuC2I CCSGG 3 cut(s) 196, 4392, 4393
AsuII TTCGAA 4 cut(s) 472, 6080, 7142, 7307
AsuNHI GCTAGC 1 cut(s) 1094
AvaI CYCGRG 2 cut(s) 4391, 7023
AxyI CCTNAGG 2 cut(s) 6186, 6483
BaeGI GKGCMC 4 cut(s) 1991, 2365, 2634, 7384
BaeI ACNNNNGTAYC 4 cut(s) 3523, 3556, 3753, 3786
BamHI GGATCC 1 cut(s) 1501
BanI GGYRCC 5 cut(s) 29, 400, 2362, 7186, 7424
BanII GRGCYC 4 cut(s) 377, 3409, 4863, 6482
BarI GAAGNNNNNNTAC 4 cut(s) 842, 874, 3790, 3822
BauI CACGAG 1 cut(s) 7377
BbsI GAAGAC 3 cut(s) 2160, 2798, 6986
BbvCI CCTCAGC 2 cut(s) 60, 1422
BceAI ACGGC 8 cut(s) 22, 199, 257, 328, 388, 1151, 3065, 6413
BcgI CGANNNNNNTGC 6 cut(s) 3374, 3408, 5849, 5859, 5883, 5893
BciT130I CCWGG 6 cut(s) 1805, 4332, 4511, 4758, 6309, 7362
BciVI GTATCC 2 cut(s) 661, 7495
BclI TGATCA 3 cut(s) 1771, 3820, 6282
BcnI CCSGG 3 cut(s) 196, 4392, 4393
BcoDI GTCTC 9 cut(s) 322, 411, 1537, 2775, 2991, 3211, 4287, 6344, 7738
BcuI ACTAGT 1 cut(s) 7505
BfoI RGCGCY 4 cut(s) 33, 347, 6835, 7428
BfrI CTTAAG 1 cut(s) 6512
BfuAI ACCTGC 6 cut(s) 388, 680, 5171, 5252, 5341, 5671
BfuI GTATCC 2 cut(s) 661, 7495
BglI GCCNNNNNGGC 1 cut(s) 220
BglII AGATCT 5 cut(s) 237, 1374, 1886, 3922, 5771
Bme1390I CCNGG 9 cut(s) 196, 1805, 4332, 4392, 4393, 4511, 4758, 6309, 7362
BmeT110I CYCGRG 2 cut(s) 4391, 7023
BmrFI CCNGG 9 cut(s) 196, 1805, 4332, 4392, 4393, 4511, 4758, 6309, 7362
BmrI ACTGGG 3 cut(s) 2407, 4962, 7749
BmtI GCTAGC 1 cut(s) 1098
BmuI ACTGGG 3 cut(s) 2407, 4962, 7749
BoxI GACNNNNGTC 2 cut(s) 1605, 4978
BpiI GAAGAC 3 cut(s) 2160, 2798, 6986
BpmI CTGGAG 8 cut(s) 275, 341, 1787, 3168, 3675, 3944, 7247, 7644
Bpu10I CCTNAGC 3 cut(s) 60, 1422, 2099
Bpu14I TTCGAA 4 cut(s) 472, 6080, 7142, 7307
BpuEI CTTGAG 6 cut(s) 2022, 3479, 4966, 4997, 6130, 6857
BpuMI CCSGG 3 cut(s) 196, 4392, 4393
Bsa29I ATCGAT 1 cut(s) 6522
BsaAI YACGTR 2 cut(s) 4490, 5562
BsaBI GATNNNNATC 1 cut(s) 3927
BsaHI GRCGYC 3 cut(s) 30, 315, 7425
BsaI GGTCTC 1 cut(s) 6344
BsaWI WCCGGW 3 cut(s) 141, 1547, 4588
BsaXI ACNNNNNCTCC 4 cut(s) 3673, 3703, 7743, 7773
Bse118I RCCGGY 3 cut(s) 305, 3233, 7787
Bse21I CCTNAGG 2 cut(s) 6186, 6483
Bse3DI GCAATG 5 cut(s) 1795, 3244, 3787, 4800, 5229
Bse8I GATNNNNATC 1 cut(s) 3927
BseAI TCCGGA 1 cut(s) 1547
BseBI CCWGG 6 cut(s) 1805, 4332, 4511, 4758, 6309, 7362
BseCI ATCGAT 1 cut(s) 6522
BseJI GATNNNNATC 1 cut(s) 3927
BseMI GCAATG 5 cut(s) 1795, 3244, 3787, 4800, 5229
BseRI GAGGAG 6 cut(s) 13, 216, 1281, 2625, 6348, 7163
BseSI GKGCMC 4 cut(s) 1991, 2365, 2634, 7384
BseX3I CGGCCG 1 cut(s) 7
BseYI CCCAGC 2 cut(s) 369, 7535
BsgI GTGCAG 9 cut(s) 2962, 3203, 3246, 4926, 5064, 5109, 6271, 6371, 7341
Bsh1236I CGCG 4 cut(s) 270, 798, 6756, 7581
Bsh1285I CGRYCG 3 cut(s) 10, 268, 290
BshNI GGYRCC 5 cut(s) 29, 400, 2362, 7186, 7424
BshVI ATCGAT 1 cut(s) 6522
BsiEI CGRYCG 3 cut(s) 10, 268, 290
BsiHKCI CYCGRG 2 cut(s) 4391, 7023
BslFI GGGAC 7 cut(s) 567, 2414, 4767, 5593, 5617, 6166, 7204
BsmAI GTCTC 9 cut(s) 322, 411, 1537, 2775, 2991, 3211, 4287, 6344, 7738
BsmBI CGTCTC 2 cut(s) 322, 411
BsmFI GGGAC 7 cut(s) 567, 2414, 4767, 5593, 5617, 6166, 7204
BsmI GAATGC 2 cut(s) 2901, 5711
Bso31I GGTCTC 1 cut(s) 6344
BsoBI CYCGRG 2 cut(s) 4391, 7023
Bsp119I TTCGAA 4 cut(s) 472, 6080, 7142, 7307
Bsp13I TCCGGA 1 cut(s) 1547
Bsp1407I TGTACA 7 cut(s) 931, 1780, 4117, 6544, 6692, 6826, 8016
Bsp19I CCATGG 3 cut(s) 2438, 5058, 7125
Bsp68I TCGCGA 1 cut(s) 6756
BspDI ATCGAT 1 cut(s) 6522
BspEI TCCGGA 1 cut(s) 1547
BspFNI CGCG 4 cut(s) 270, 798, 6756, 7581
BspHI TCATGA 4 cut(s) 2971, 3894, 4005, 6316
BspMAI CTGCAG 3 cut(s) 1446, 2857, 2878
BspMI ACCTGC 6 cut(s) 388, 680, 5171, 5252, 5341, 5671
BspOI GCTAGC 1 cut(s) 1098
BspQI GCTCTTC 4 cut(s) 534, 741, 3414, 4851
BspT104I TTCGAA 4 cut(s) 472, 6080, 7142, 7307
BspT107I GGYRCC 5 cut(s) 29, 400, 2362, 7186, 7424
BspTI CTTAAG 1 cut(s) 6512
BspTNI GGTCTC 1 cut(s) 6344
BsrDI GCAATG 5 cut(s) 1795, 3244, 3787, 4800, 5229
BsrFI RCCGGY 3 cut(s) 305, 3233, 7787
BsrGI TGTACA 7 cut(s) 931, 1780, 4117, 6544, 6692, 6826, 8016
BssAI RCCGGY 3 cut(s) 305, 3233, 7787
BssNAI GTATAC 1 cut(s) 7017
BssNI GRCGYC 3 cut(s) 30, 315, 7425
BssSI CACGAG 1 cut(s) 7377
BssT1I CCWWGG 9 cut(s) 1497, 1674, 2334, 2438, 4618, 5058, 6669, 7125, 7515
Bst1107I GTATAC 1 cut(s) 7017
Bst2BI CACGAG 1 cut(s) 7377
Bst2UI CCWGG 6 cut(s) 1805, 4332, 4511, 4758, 6309, 7362
BstACI GRCGYC 3 cut(s) 30, 315, 7425
BstAFI CTTAAG 1 cut(s) 6512
BstAPI GCANNNNNTGC 2 cut(s) 400, 6425
BstAUI TGTACA 7 cut(s) 931, 1780, 4117, 6544, 6692, 6826, 8016
BstBAI YACGTR 2 cut(s) 4490, 5562
BstBI TTCGAA 4 cut(s) 472, 6080, 7142, 7307
BstDSI CCRYGG 5 cut(s) 273, 2438, 4301, 5058, 7125
BstEII GGTNACC 1 cut(s) 2482
BstFNI CGCG 4 cut(s) 270, 798, 6756, 7581
BstH2I RGCGCY 4 cut(s) 33, 347, 6835, 7428
BstMAI GTCTC 9 cut(s) 322, 411, 1537, 2775, 2991, 3211, 4287, 6344, 7738
BstMCI CGRYCG 3 cut(s) 10, 268, 290
BstNI CCWGG 6 cut(s) 1805, 4332, 4511, 4758, 6309, 7362
BstPAI GACNNNNGTC 2 cut(s) 1605, 4978
BstPI GGTNACC 1 cut(s) 2482
BstSCI CCNGG 9 cut(s) 194, 1803, 4330, 4390, 4391, 4509, 4756, 6307, 7360
BstSLI GKGCMC 4 cut(s) 1991, 2365, 2634, 7384
BstSNI TACGTA 1 cut(s) 4490
BstUI CGCG 4 cut(s) 270, 798, 6756, 7581
BstV2I GAAGAC 3 cut(s) 2160, 2798, 6986
BstX2I RGATCY 9 cut(s) 237, 1374, 1501, 1886, 3164, 3623, 3887, 3922, 5771
BstXI CCANNNNNNTGG 4 cut(s) 365, 1586, 4699, 5507
BstYI RGATCY 9 cut(s) 237, 1374, 1501, 1886, 3164, 3623, 3887, 3922, 5771
BstZ17I GTATAC 1 cut(s) 7017
BstZI CGGCCG 1 cut(s) 7
Bsu15I ATCGAT 1 cut(s) 6522
Bsu36I CCTNAGG 2 cut(s) 6186, 6483
BsuI GTATCC 2 cut(s) 661, 7495
BsuTUI ATCGAT 1 cut(s) 6522
BtgI CCRYGG 5 cut(s) 273, 2438, 4301, 5058, 7125
BtgZI GCGATG 3 cut(s) 648, 4128, 7562
BtsI GCAGTG 3 cut(s) 4407, 5877, 6967
BtuMI TCGCGA 1 cut(s) 6756
BveI ACCTGC 6 cut(s) 388, 680, 5171, 5252, 5341, 5671
CaiI CAGNNNCTG 6 cut(s) 67, 418, 1250, 1463, 2525, 7535
CciI TCATGA 4 cut(s) 2971, 3894, 4005, 6316
Cfr10I RCCGGY 3 cut(s) 305, 3233, 7787
Cfr9I CCCGGG 1 cut(s) 4391
ClaI ATCGAT 1 cut(s) 6522
CseI GACGC 3 cut(s) 304, 404, 1469
CsiI ACCWGGT 1 cut(s) 4756
CspCI CAANNNNNGTGG 2 cut(s) 561, 596
DinI GGCGCC 2 cut(s) 31, 7426
DraI TTTAAA 4 cut(s) 3552, 4381, 5326, 7768
DraIII CACNNNGTG 1 cut(s) 3596
EaeI YGGCCR 3 cut(s) 7, 1306, 7334
EagI CGGCCG 1 cut(s) 7
EciI GGCGGA 2 cut(s) 219, 3661
Ecl136II GAGCTC 2 cut(s) 3407, 4861
EclXI CGGCCG 1 cut(s) 7
Eco105I TACGTA 1 cut(s) 4490
Eco130I CCWWGG 9 cut(s) 1497, 1674, 2334, 2438, 4618, 5058, 6669, 7125, 7515
Eco147I AGGCCT 2 cut(s) 47, 5765
Eco24I GRGCYC 4 cut(s) 377, 3409, 4863, 6482
Eco31I GGTCTC 1 cut(s) 6344
Eco47III AGCGCT 1 cut(s) 6833
Eco52I CGGCCG 1 cut(s) 7
Eco53kI GAGCTC 2 cut(s) 3407, 4861
Eco81I CCTNAGG 2 cut(s) 6186, 6483
Eco88I CYCGRG 2 cut(s) 4391, 7023
Eco91I GGTNACC 1 cut(s) 2482
EcoICRI GAGCTC 2 cut(s) 3407, 4861
EcoO109I RGGNCCY 3 cut(s) 2401, 4549, 4754
EcoO65I GGTNACC 1 cut(s) 2482
EcoRI GAATTC 1 cut(s) 762
EcoRII CCWGG 6 cut(s) 1803, 4330, 4509, 4756, 6307, 7360
EcoT14I CCWWGG 9 cut(s) 1497, 1674, 2334, 2438, 4618, 5058, 6669, 7125, 7515
EcoT22I ATGCAT 4 cut(s) 448, 783, 3301, 6139
EcoT38I GRGCYC 4 cut(s) 377, 3409, 4863, 6482
EgeI GGCGCC 2 cut(s) 31, 7426
EheI GGCGCC 2 cut(s) 31, 7426
ErhI CCWWGG 9 cut(s) 1497, 1674, 2334, 2438, 4618, 5058, 6669, 7125, 7515
Esp3I CGTCTC 2 cut(s) 322, 411
FalI AAGNNNNNCTT 8 cut(s) 466, 498, 845, 877, 2535, 2567, 7261, 7293
FaqI GGGAC 7 cut(s) 567, 2414, 4767, 5593, 5617, 6166, 7204
FauI CCCGC 2 cut(s) 174, 6969
FauNDI CATATG 3 cut(s) 4900, 6823, 7840
FbaI TGATCA 3 cut(s) 1771, 3820, 6282
FblI GTMKAC 4 cut(s) 264, 4911, 5240, 7016
FriOI GRGCYC 4 cut(s) 377, 3409, 4863, 6482
GsaI CCCAGC 2 cut(s) 373, 7539
GsuI CTGGAG 8 cut(s) 275, 341, 1787, 3168, 3675, 3944, 7247, 7644
HaeII RGCGCY 4 cut(s) 33, 347, 6835, 7428
HgaI GACGC 3 cut(s) 304, 404, 1469
Hin1I GRCGYC 3 cut(s) 30, 315, 7425
HincII GTYRAC 8 cut(s) 265, 1596, 2458, 4767, 5077, 5241, 5428, 5640
HindII GTYRAC 8 cut(s) 265, 1596, 2458, 4767, 5077, 5241, 5428, 5640
HindIII AAGCTT 3 cut(s) 135, 1832, 7193
HpaI GTTAAC 3 cut(s) 1596, 2458, 4767
Hpy99I CGWCG 2 cut(s) 55, 314
HpyCH4IV ACGT 9 cut(s) 889, 1574, 2271, 2656, 2959, 3518, 4489, 5561, 7872
HpySE526I ACGT 9 cut(s) 889, 1574, 2271, 2656, 2959, 3518, 4489, 5561, 7872
Hsp92I GRCGYC 3 cut(s) 30, 315, 7425
KasI GGCGCC 2 cut(s) 29, 7424
Kpn2I TCCGGA 1 cut(s) 1547
KroI GCCGGC 2 cut(s) 305, 7787
KroNI GCCGGC 2 cut(s) 307, 7789
Ksp22I TGATCA 3 cut(s) 1771, 3820, 6282
KspAI GTTAAC 3 cut(s) 1596, 2458, 4767
LguI GCTCTTC 4 cut(s) 534, 741, 3414, 4851
MabI ACCWGGT 1 cut(s) 4756
MaeII ACGT 9 cut(s) 889, 1574, 2271, 2656, 2959, 3518, 4489, 5561, 7872
MfeI CAATTG 2 cut(s) 2948, 6662
MflI RGATCY 9 cut(s) 237, 1374, 1501, 1886, 3164, 3623, 3887, 3922, 5771
Mly113I GGCGCC 2 cut(s) 30, 7425
MmeI TCCRAC 9 cut(s) 270, 2400, 2587, 3064, 3142, 3172, 4541, 4608, 7447
Mph1103I ATGCAT 4 cut(s) 448, 783, 3301, 6139
MreI CGCCGGCG 1 cut(s) 305
MroI TCCGGA 1 cut(s) 1547
MroNI GCCGGC 2 cut(s) 305, 7787
MroXI GAANNNNTTC 7 cut(s) 478, 481, 1376, 2108, 6014, 6684, 8090
MspA1I CMGCKG 1 cut(s) 7535
MspCI CTTAAG 1 cut(s) 6512
MspR9I CCNGG 9 cut(s) 196, 1805, 4332, 4392, 4393, 4511, 4758, 6309, 7362
MunI CAATTG 2 cut(s) 2948, 6662
Mva1269I GAATGC 2 cut(s) 2901, 5711
MvaI CCWGG 6 cut(s) 1805, 4332, 4511, 4758, 6309, 7362
MvnI CGCG 4 cut(s) 270, 798, 6756, 7581
NaeI GCCGGC 2 cut(s) 307, 7789
NarI GGCGCC 2 cut(s) 30, 7425
NciI CCSGG 3 cut(s) 196, 4392, 4393
NcoI CCATGG 3 cut(s) 2438, 5058, 7125
NdeI CATATG 3 cut(s) 4900, 6823, 7840
NgoMIV GCCGGC 2 cut(s) 305, 7787
NheI GCTAGC 1 cut(s) 1094
NmeAIII GCCGAG 1 cut(s) 299
NmuCI GTSAC 9 cut(s) 2391, 2482, 3679, 3812, 5065, 5460, 5593, 5651, 6748
NruI TCGCGA 1 cut(s) 6756
NsiI ATGCAT 4 cut(s) 448, 783, 3301, 6139
NspV TTCGAA 4 cut(s) 472, 6080, 7142, 7307
PaeI GCATGC 2 cut(s) 2008, 5095
PagI TCATGA 4 cut(s) 2971, 3894, 4005, 6316
PaqCI CACCTGC 2 cut(s) 388, 5671
PceI AGGCCT 2 cut(s) 47, 5765
PciI ACATGT 3 cut(s) 1364, 2620, 3497
PciSI GCTCTTC 4 cut(s) 534, 741, 3414, 4851
PcsI WCGNNNNNNNCGW 2 cut(s) 270, 5095
PctI GAATGC 2 cut(s) 2901, 5711
PdiI GCCGGC 2 cut(s) 307, 7789
PdmI GAANNNNTTC 7 cut(s) 478, 481, 1376, 2108, 6014, 6684, 8090
PflFI GACNNNGTC 1 cut(s) 314
PflMI CCANNNNNTGG 3 cut(s) 1511, 4433, 6578
PfoI TCCNGGA 2 cut(s) 1803, 4509
PluTI GGCGCC 2 cut(s) 33, 7428
Ppu21I YACGTR 2 cut(s) 4490, 5562
PpuMI RGGWCCY 3 cut(s) 2401, 4549, 4754
PscI ACATGT 3 cut(s) 1364, 2620, 3497
PshAI GACNNNNGTC 2 cut(s) 1605, 4978
PshBI ATTAAT 5 cut(s) 1508, 3009, 4472, 6056, 7635
PsiI TTATAA 3 cut(s) 621, 3908, 5783
Psp124BI GAGCTC 2 cut(s) 3409, 4863
Psp1406I AACGTT 2 cut(s) 889, 3518
Psp5II RGGWCCY 3 cut(s) 2401, 4549, 4754
Psp6I CCWGG 6 cut(s) 1803, 4330, 4509, 4756, 6307, 7360
PspEI GGTNACC 1 cut(s) 2482
PspFI CCCAGC 2 cut(s) 369, 7535
PspGI CCWGG 6 cut(s) 1803, 4330, 4509, 4756, 6307, 7360
PspPPI RGGWCCY 3 cut(s) 2401, 4549, 4754
PsrI GAACNNNNNNTAC 4 cut(s) 1559, 1591, 7853, 7885
PstI CTGCAG 3 cut(s) 1446, 2857, 2878
PstNI CAGNNNCTG 6 cut(s) 67, 418, 1250, 1463, 2525, 7535
PsuI RGATCY 9 cut(s) 237, 1374, 1501, 1886, 3164, 3623, 3887, 3922, 5771
PsyI GACNNNGTC 1 cut(s) 314
PvuII CAGCTG 1 cut(s) 7535
RruI TCGCGA 1 cut(s) 6756
SacI GAGCTC 2 cut(s) 3409, 4863
SalI GTCGAC 2 cut(s) 263, 5239
SapI GCTCTTC 4 cut(s) 534, 741, 3414, 4851
ScrFI CCNGG 9 cut(s) 196, 1805, 4332, 4392, 4393, 4511, 4758, 6309, 7362
SexAI ACCWGGT 1 cut(s) 4756
SfoI GGCGCC 2 cut(s) 31, 7426
SfuI TTCGAA 4 cut(s) 472, 6080, 7142, 7307
SgrAI CRCCGGYG 1 cut(s) 305
SmaI CCCGGG 1 cut(s) 4393
SmlI CTYRAG 7 cut(s) 2037, 3458, 4945, 4976, 6145, 6512, 6872
SmoI CTYRAG 7 cut(s) 2037, 3458, 4945, 4976, 6145, 6512, 6872
SnaBI TACGTA 1 cut(s) 4490
SpeI ACTAGT 1 cut(s) 7505
SphI GCATGC 2 cut(s) 2008, 5095
SseBI AGGCCT 2 cut(s) 47, 5765
SspDI GGCGCC 2 cut(s) 29, 7424
SspI AATATT 2 cut(s) 6863, 7772
SstI GAGCTC 2 cut(s) 3409, 4863
StuI AGGCCT 2 cut(s) 47, 5765
StyD4I CCNGG 9 cut(s) 194, 1803, 4330, 4390, 4391, 4509, 4756, 6307, 7360
StyI CCWWGG 9 cut(s) 1497, 1674, 2334, 2438, 4618, 5058, 6669, 7125, 7515
TaiI ACGT 9 cut(s) 892, 1577, 2274, 2659, 2962, 3521, 4492, 5564, 7875
TaqII GACCGA 4 cut(s) 276, 1104, 2107, 2414
TauI GCSGC 7 cut(s) 35, 172, 175, 305, 4409, 7339, 7425
TseFI GTSAC 9 cut(s) 2391, 2482, 3679, 3812, 5065, 5460, 5593, 5651, 6748
Tsp45I GTSAC 9 cut(s) 2391, 2482, 3679, 3812, 5065, 5460, 5593, 5651, 6748
TspGWI ACGGA 5 cut(s) 93, 4290, 5880, 6120, 6353
TspMI CCCGGG 1 cut(s) 4391
Tth111I GACNNNGTC 1 cut(s) 314
Van91I CCANNNNNTGG 3 cut(s) 1511, 4433, 6578
Vha464I CTTAAG 1 cut(s) 6512
VneI GTGCAC 1 cut(s) 7380
VspI ATTAAT 5 cut(s) 1508, 3009, 4472, 6056, 7635
XbaI TCTAGA 2 cut(s) 4274, 5980
XcmI CCANNNNNNNNNTGG 1 cut(s) 250
XmaI CCCGGG 1 cut(s) 4391
XmiI GTMKAC 4 cut(s) 264, 4911, 5240, 7016
XmnI GAANNNNTTC 7 cut(s) 478, 481, 1376, 2108, 6014, 6684, 8090
Zsp2I ATGCAT 4 cut(s) 448, 783, 3301, 6139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.