Rh7AG277400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000582
Physical Location & Seq
Forward (+)
29072643 .. 29077451
4809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG277400.1

Sequence Viewer

Length: 2262 bp
ATGAAGTGGAGAGAATTTTTCCAGAAAATTGGCATTGTGGATTTTGAGAAGGTAGTTCAAGTTGAGAAGGGTTTCACTGAGTTCTCTGTGGCTCTATTTAATAATCTGACTTGGGACCAGCACACTATTTCCCATGGGTTGAATGCCACAGATTGGGAATCACCTGAGTTAGTCCATTTATTATCCCTATTGTCCAGAGATGGCAACAGAAAAGGTTGTGAGTATCTCTTAGAGGTTCTCGATAAATTATGGGATGATTGCTATAGTGACAGAGCTACAGGGTACTGCTCTTCTAAGTCTGTTGCAGATAGAAAGCCCTTCAAATCTTCATTTATGAGCACCATCTGCGATGTGCAATGGGTAGTATCAGGAATGGATGATAAACTTCACTATCCCAAGGATCTATATCACGACAGTGTTGCAGTGCGGTCAATTCTTGGTGGATCTGCCCCATTTTTTGTTCCTAAGGCTAGCAGTGAAAAATTTGTATCTGATATTGGTTTTAAGACAAGAGTCTCTCTTCACAATGCTCTGGAGATGTTGAAACCATGGAGATGTGAGAATCCGTTTAGGGCCAGCCTAGCACAAATGTCCAAATTTTACTCATTAATCTGGAATGAAATGGCTTCTTCAAAGAAGACAACTGCAGAGGAATTCTGTTTGGAACCTTTTGTATTTGTTCCATATGAATCTAGCTTCCGGCATGAGGATGTGGTGTCTGGTACATTTCTGTCCCTTGAAGAAGTATACTGGGATGATTCTACTTTCTTTGTGGACCAAATCAAGGAGATCCATCATCAGTGCAACTCAACAGTTGCTAATGCTGTTTTTCAAGTTTTTCGGAAGTGGGCTGATGGGCTCCAATCAGGAATGAGTGCTGAGGATATTGTATACTTGAAAGATTCTCTTACAAGGATGGAATGTACTGTGCTTCCTACTGTACAGGATAAGTGGGTATCTCTACATCCTTCCTATGGTCTCCTGTGCTGGTGTGATGATAAGAAGTTGAAGAAGCAGTTTATGCATATGGATGGACTTGATTTTCTTTACTCTGGTGGACTAAGTAATGATGATGAAGAGATCCTAAGTGCAAAAATGTCCGTCCTCATGCGAAACTTAGGGATTCCTGCACTTTCAAAGGTTGTGACTCGTGAGGCGATGTTTAATGGTCCGACAGAATCTAGCTTTAAAGCTGCATTGCTGGATTGGGCTCTGCCATATGCGCAACGCTTCTTACATAGTTTACATCCTGATAAATATTCTCAACTCAAGCAGTCTGGATTCGATATACTAAATCGTTTGCGAGTAGTAGAAGTTAAAAAGCTGTCCTACCGCAATGTTATAAAGATTGCTGGAAGTGAATCCAAGAAGCAAATTGAATGTAGTTGTGTTCTGCAGGTGCCAAAGCTTCCTGATGGAGAATCTGTTTGGTCCCTGTCACATGTGCATAATGATAGGTTACCCCAGCCAAGTGACTGGCGCTTTGTTGGTTGGAAAGCCCCACTAAGCTTTGGTTATGCAAATCTTTTCAAGGCTCAGGCACAATTTGCACAGCTTACCATTGTCTCACAAATTGAAATGGATAGTGATTCTGAAACCCATGTCAGACAAACAGTTGAATCAACTCCCATTTCAGTCGACATTAAATGGACAATTGGTGAGGGTACAGCAACAACATCTGCACCTTTAGTGCTGCCAAACTCCAATGATTTGCAAGAACACTTCGATGATGAGACTGATATGGATACTGATTTCAATCCTAATAATCTAGATTTTGTTGTTGACCCTCGCGTTTTGGGTTCATCTGATTGTAGGAAGGTAGACCATCCTAGATATGGCTCTAGTGGAAGAGATTCAATGCGTGGAAGAGATGCAATGCTTACCGGGAGGTTAGGTGAGGTTGTTGCTTTTAAATACTTAATTGCAAAAGCTGGCAAGTCTGTTGTGAGGTGGGTTAATGAAAGAATTGAAACTGGGCTACCCTATGACATAGTTGTAGGTGAGAAGGAAGATAGTCTAGAGTTCATTGAGGTTAAAGCCACCCAACAACCAAAAAAGGATTGGTTCCACATATCAATGATGGAGTGGCAATTTGCAGCGGAAAAAGGCGAAGCCTTCAGCATTTTGCACGTCCTCTTATTGGGTAATAATGCTGCAAGAGTCTCAGTTTACAAGAATCCTGTAAAATTGTGTCATCTGGGCAAGCTACAGTTGCATCTTTCGATGCCTAGGCAGGAGAAGGAATTATTTCTTGTGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3883

Protein Analysis

753

Amino Acids

85.71

Weight (kDa)

5.81

Isoelectric Point (pI)

36.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOV_C PF13020 632 - 718 2.7e-19 Protein NO VEIN, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08300 AT1G08300 AT1G08300 AT4G13750
fragaria_vesca FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_4g13620 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660
malus_domestica MD04G1012800.v1.1 MD04G1012900.v1.1 MD04G1013100.v1.1 MD04G1013300.v1.1
prunus_persica Prupe.1G159000_v2.0.a1 Prupe.1G159100_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G358100_v2.0.a1
pyrus_communis pycom04g01020 pycom04g01030
rosa_chinensis RchiOBHm_Chr4g0414341 RchiOBHm_Chr4g0414351 RchiOBHm_Chr6g0275261 RchiOBHm_Chr7g0213881 RchiOBHm_Chr7g0213891
rosa_laevigata RLG00000008153 RLG00000008155 RLG00000013477
rosa_multiflora Rmu_co8510163.1_g000001 Rmu_sc0004087.1_g000027 Rmu_sc0005196.1_g000014 Rmu_sc0005558.1_g000005 Rmu_sc0005558.1_g000006 Rmu_sc0008100.1_g000005 Rmu_sc0008560.1_g000005
rosa_roxburghii Rroxscaffold_5G00358210 Rroxscaffold_5G00358220 Rroxscaffold_7G00187920 Rroxscaffold_7G00187930 Rroxscaffold_7G00193450
rosa_rugosa Rorug04G0127100 Rorug04G0127200 Rorug04G0127300 Rorug04G0127400 Rorug06G0090600
rosa_samantha Rh4AG185200 Rh4AG185300 Rh4AG185500 Rh4BG184700 Rh4BG184800 Rh4CG198000 Rh4CG198100 Rh4DG182400 Rh4DG182600 Rh6AG204100 Rh6BG207000 Rh6CG209600 Rh6DG200000 Rh7AG277400 Rh7CG296400 Rh7CG296500
rosa_wichuraiana Rw4G015850 Rw4G015860 Rw6G017730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1343
AarI CACCTGC 1 cut(s) 1387
Acc16I TGCGCA 1 cut(s) 1224
Acc36I ACCTGC 1 cut(s) 1387
AccB1I GGYRCC 1 cut(s) 1399
AccB7I CCANNNNNTGG 1 cut(s) 153
AccI GTMKAC 4 cut(s) 747, 891, 1638, 1821
AccII CGCG 1 cut(s) 1791
AciI CCGC 3 cut(s) 427, 1333, 2099
AclWI GGATC 4 cut(s) 408, 451, 784, 1075
AcsI RAATTY 4 cut(s) 14, 482, 596, 653
AcuI CTGAAG 1 cut(s) 2101
AfaI GTAC 5 cut(s) 284, 724, 925, 942, 1666
AfiI CCNNNNNNNGG 6 cut(s) 153, 706, 784, 974, 1835, 2140
AflIII ACRYGT 1 cut(s) 1441
AjiI CACGTC 1 cut(s) 2131
AleI CACNNNNGTG 1 cut(s) 414
Alw21I GWGCWC 1 cut(s) 341
Alw26I GTCTC 5 cut(s) 520, 983, 1570, 1727, 2167
AlwI GGATC 4 cut(s) 408, 451, 784, 1075
AoxI GGCC 1 cut(s) 573
ApeKI GCWGC 4 cut(s) 1193, 1693, 2096, 2153
ApoI RAATTY 4 cut(s) 14, 482, 596, 653
ArsI GACNNNNNNTTYG 2 cut(s) 1466, 1498
AseI ATTAAT 1 cut(s) 608
Asp700I GAANNNNTTC 3 cut(s) 71, 1852, 2247
AspA2I CCTAGG 1 cut(s) 2228
AspLEI GCGC 2 cut(s) 1225, 1482
AspS9I GGNCC 5 cut(s) 115, 573, 775, 1169, 1431
AsuC2I CCSGG 1 cut(s) 1885
AsuHPI GGTGA 4 cut(s) 153, 1670, 1907, 2012
AsuNHI GCTAGC 1 cut(s) 470
AvaII GGWCC 4 cut(s) 115, 775, 1169, 1431
AvrII CCTAGG 1 cut(s) 2228
AxyI CCTNAGG 1 cut(s) 465
BanI GGYRCC 1 cut(s) 1399
BanII GRGCYC 2 cut(s) 861, 1213
BauI CACGAG 1 cut(s) 1149
BbsI GAAGAC 1 cut(s) 644
Bbv12I GWGCWC 1 cut(s) 341
BbvCI CCTCAGC 1 cut(s) 879
BbvI GCAGC 4 cut(s) 1180, 1680, 2108, 2140
BccI CCATC 9 cut(s) 194, 350, 801, 848, 910, 1025, 1409, 1833, 2074
BcgI CGANNNNNNTGC 2 cut(s) 401, 435
BciVI GTATCC 1 cut(s) 1738
BcnI CCSGG 1 cut(s) 1885
BcoDI GTCTC 5 cut(s) 520, 983, 1570, 1727, 2167
BfaI CTAG 9 cut(s) 471, 581, 693, 1182, 1769, 1830, 1842, 2018, 2229
BfmI CTRYAG 5 cut(s) 262, 276, 645, 1394, 2207
BfoI RGCGCY 1 cut(s) 1483
BfuAI ACCTGC 1 cut(s) 1387
BfuI GTATCC 1 cut(s) 1738
BisI GCNGC 4 cut(s) 1194, 1694, 2097, 2154
BlnI CCTAGG 1 cut(s) 2228
BlsI GCNGC 4 cut(s) 1195, 1695, 2098, 2155
Bme1390I CCNGG 1 cut(s) 1885
Bme18I GGWCC 4 cut(s) 115, 775, 1169, 1431
BmgBI CACGTC 1 cut(s) 2131
BmgT120I GGNCC 5 cut(s) 115, 573, 775, 1169, 1431
BmiI GGNNCC 6 cut(s) 116, 666, 860, 1401, 1433, 2066
BmrFI CCNGG 1 cut(s) 1885
BmrI ACTGGG 2 cut(s) 760, 1983
BmsI GCATC 3 cut(s) 1861, 2214, 2224
BmtI GCTAGC 1 cut(s) 474
BmuI ACTGGG 2 cut(s) 760, 1983
BoxI GACNNNNGTC 1 cut(s) 512
BpiI GAAGAC 1 cut(s) 644
BpmI CTGGAG 1 cut(s) 554
Bpu10I CCTNAGC 2 cut(s) 879, 1536
BpuEI CTTGAG 1 cut(s) 1253
BpuMI CCSGG 1 cut(s) 1885
BsaBI GATNNNNATC 2 cut(s) 405, 1755
BsaI GGTCTC 1 cut(s) 983
BsaJI CCNNGG 4 cut(s) 133, 396, 548, 2228
BsaXI ACNNNNNCTCC 4 cut(s) 1410, 1440, 1879, 1909
Bsc4I CCNNNNNNNGG 6 cut(s) 153, 706, 784, 974, 1835, 2140
Bse1I ACTGG 3 cut(s) 755, 1481, 1978
Bse21I CCTNAGG 1 cut(s) 465
Bse3DI GCAATG 4 cut(s) 362, 1196, 1342, 1881
Bse8I GATNNNNATC 2 cut(s) 405, 1755
BseDI CCNNGG 4 cut(s) 133, 396, 548, 2228
BseGI GGATG 9 cut(s) 259, 382, 715, 760, 921, 964, 1036, 1246, 1825
BseJI GATNNNNATC 2 cut(s) 405, 1755
BseLI CCNNNNNNNGG 6 cut(s) 153, 706, 784, 974, 1835, 2140
BseMI GCAATG 4 cut(s) 362, 1196, 1342, 1881
BseMII CTCAG 5 cut(s) 69, 156, 870, 1550, 2178
BseNI ACTGG 3 cut(s) 755, 1481, 1978
BseXI GCAGC 4 cut(s) 1180, 1680, 2108, 2140
BseYI CCCAGC 1 cut(s) 1464
BsgI GTGCAG 2 cut(s) 1113, 1665
Bsh1236I CGCG 1 cut(s) 1791
BshFI GGCC 1 cut(s) 575
BshNI GGYRCC 1 cut(s) 1399
BsiHKAI GWGCWC 1 cut(s) 341
BsiSI CCGG 2 cut(s) 700, 1884
BslFI GGGAC 3 cut(s) 128, 718, 1417
BslI CCNNNNNNNGG 6 cut(s) 153, 706, 784, 974, 1835, 2140
BsmAI GTCTC 5 cut(s) 520, 983, 1570, 1727, 2167
BsmFI GGGAC 3 cut(s) 128, 718, 1417
BsmI GAATGC 1 cut(s) 148
BsnI GGCC 1 cut(s) 575
Bso31I GGTCTC 1 cut(s) 983
Bsp1286I GDGCHC 3 cut(s) 341, 861, 1213
Bsp1407I TGTACA 1 cut(s) 940
Bsp143I GATC 4 cut(s) 400, 443, 789, 1080
Bsp19I CCATGG 2 cut(s) 133, 548
BspACI CCGC 3 cut(s) 427, 1333, 2099
BspANI GGCC 1 cut(s) 575
BspCNI CTCAG 5 cut(s) 70, 157, 871, 1549, 2177
BspFNI CGCG 1 cut(s) 1791
BspLI GGNNCC 6 cut(s) 116, 666, 860, 1401, 1433, 2066
BspMAI CTGCAG 2 cut(s) 649, 1398
BspMI ACCTGC 1 cut(s) 1387
BspOI GCTAGC 1 cut(s) 474
BspPI GGATC 4 cut(s) 408, 451, 784, 1075
BspQI GCTCTTC 1 cut(s) 295
BspT107I GGYRCC 1 cut(s) 1399
BspTNI GGTCTC 1 cut(s) 983
BsrDI GCAATG 4 cut(s) 362, 1196, 1342, 1881
BsrGI TGTACA 1 cut(s) 940
BsrI ACTGG 3 cut(s) 755, 1481, 1978
BssECI CCNNGG 4 cut(s) 133, 396, 548, 2228
BssMI GATC 4 cut(s) 400, 443, 789, 1080
BssNAI GTATAC 2 cut(s) 748, 892
BssSI CACGAG 1 cut(s) 1149
BssT1I CCWWGG 4 cut(s) 133, 396, 548, 2228
Bst1107I GTATAC 2 cut(s) 748, 892
Bst2BI CACGAG 1 cut(s) 1149
Bst4CI ACNGT 6 cut(s) 416, 814, 928, 940, 1615, 2211
Bst6I CTCTTC 5 cut(s) 295, 525, 1071, 1843, 1861
BstAPI GCANNNNNTGC 3 cut(s) 345, 1021, 1547
BstAUI TGTACA 1 cut(s) 940
BstC8I GCNNGC 4 cut(s) 472, 577, 1933, 2204
BstDSI CCRYGG 2 cut(s) 133, 548
BstEII GGTNACC 1 cut(s) 1458
BstF5I GGATG 9 cut(s) 259, 382, 715, 760, 921, 964, 1036, 1246, 1825
BstFNI CGCG 1 cut(s) 1791
BstH2I RGCGCY 1 cut(s) 1483
BstHHI GCGC 2 cut(s) 1225, 1482
BstKTI GATC 4 cut(s) 403, 446, 792, 1083
BstMAI GTCTC 5 cut(s) 520, 983, 1570, 1727, 2167
BstMBI GATC 4 cut(s) 400, 443, 789, 1080
BstMWI GCNNNNNNNGC 6 cut(s) 345, 581, 1021, 1222, 1547, 2212
BstNSI RCATGY 1 cut(s) 1445
BstPAI GACNNNNGTC 1 cut(s) 512
BstPI GGTNACC 1 cut(s) 1458
BstSCI CCNGG 1 cut(s) 1883
BstSFI CTRYAG 5 cut(s) 262, 276, 645, 1394, 2207
BstUI CGCG 1 cut(s) 1791
BstV1I GCAGC 4 cut(s) 1180, 1680, 2108, 2140
BstV2I GAAGAC 1 cut(s) 644
BstX2I RGATCY 4 cut(s) 400, 443, 789, 1080
BstXI CCANNNNNNTGG 2 cut(s) 29, 1476
BstYI RGATCY 4 cut(s) 400, 443, 789, 1080
BstZ17I GTATAC 2 cut(s) 748, 892
Bsu36I CCTNAGG 1 cut(s) 465
BsuI GTATCC 1 cut(s) 1738
BsuRI GGCC 1 cut(s) 575
BtgI CCRYGG 2 cut(s) 133, 548
BtgZI GCGATG 2 cut(s) 363, 1172
BtrI CACGTC 1 cut(s) 2131
BtsCI GGATG 9 cut(s) 259, 382, 715, 760, 921, 964, 1036, 1246, 1825
BtsI GCAGTG 2 cut(s) 429, 481
BtsIMutI CAGTG 5 cut(s) 75, 421, 429, 481, 806
BveI ACCTGC 1 cut(s) 1387
Cac8I GCNNGC 4 cut(s) 472, 577, 1933, 2204
CfoI GCGC 2 cut(s) 1225, 1482
Cfr13I GGNCC 5 cut(s) 115, 573, 775, 1169, 1431
Csp6I GTAC 5 cut(s) 283, 723, 924, 941, 1665
CviAII CATG 6 cut(s) 134, 549, 704, 1108, 1442, 1601
CviQI GTAC 5 cut(s) 283, 723, 924, 941, 1665
DpnI GATC 4 cut(s) 402, 445, 791, 1082
DpnII GATC 4 cut(s) 400, 443, 789, 1080
DraI TTTAAA 2 cut(s) 1189, 1912
Eam1104I CTCTTC 5 cut(s) 295, 525, 1071, 1843, 1861
EarI CTCTTC 5 cut(s) 295, 525, 1071, 1843, 1861
Eco130I CCWWGG 4 cut(s) 133, 396, 548, 2228
Eco24I GRGCYC 2 cut(s) 861, 1213
Eco31I GGTCTC 1 cut(s) 983
Eco47I GGWCC 4 cut(s) 115, 775, 1169, 1431
Eco57I CTGAAG 1 cut(s) 2101
Eco81I CCTNAGG 1 cut(s) 465
Eco91I GGTNACC 1 cut(s) 1458
EcoO65I GGTNACC 1 cut(s) 1458
EcoRI GAATTC 1 cut(s) 653
EcoT14I CCWWGG 4 cut(s) 133, 396, 548, 2228
EcoT22I ATGCAT 1 cut(s) 1026
EcoT38I GRGCYC 2 cut(s) 861, 1213
ErhI CCWWGG 4 cut(s) 133, 396, 548, 2228
FaeI CATG 6 cut(s) 137, 552, 707, 1111, 1445, 1604
FalI AAGNNNNNCTT 2 cut(s) 891, 923
FaqI GGGAC 3 cut(s) 128, 718, 1417
FatI CATG 6 cut(s) 133, 548, 703, 1107, 1441, 1600
FauNDI CATATG 3 cut(s) 685, 1026, 1219
FblI GTMKAC 4 cut(s) 747, 891, 1638, 1821
Fnu4HI GCNGC 4 cut(s) 1194, 1694, 2097, 2154
FokI GGATG 9 cut(s) 266, 389, 722, 767, 928, 951, 1043, 1233, 1812
FriOI GRGCYC 2 cut(s) 861, 1213
Fsp4HI GCNGC 4 cut(s) 1194, 1694, 2097, 2154
FspBI CTAG 9 cut(s) 471, 581, 693, 1182, 1769, 1830, 1842, 2018, 2229
FspI TGCGCA 1 cut(s) 1224
GlaI GCGC 2 cut(s) 1224, 1481
GluI GCNGC 4 cut(s) 1194, 1694, 2097, 2154
GsaI CCCAGC 1 cut(s) 1468
GsuI CTGGAG 1 cut(s) 554
HaeII RGCGCY 1 cut(s) 1483
HaeIII GGCC 1 cut(s) 575
HapII CCGG 2 cut(s) 700, 1884
HhaI GCGC 2 cut(s) 1225, 1482
Hin1II CATG 6 cut(s) 137, 552, 707, 1111, 1445, 1604
Hin6I GCGC 2 cut(s) 1223, 1480
HinP1I GCGC 2 cut(s) 1223, 1480
HincII GTYRAC 2 cut(s) 1639, 1783
HindII GTYRAC 2 cut(s) 1639, 1783
HindIII AAGCTT 2 cut(s) 1406, 1507
HpaII CCGG 2 cut(s) 700, 1884
HphI GGTGA 4 cut(s) 153, 1670, 1907, 2012
Hpy166II GTNNAC 9 cut(s) 748, 775, 892, 1058, 1244, 1639, 1783, 1822, 2170
Hpy188I TCNGA 7 cut(s) 108, 493, 843, 1173, 1594, 1607, 1807
Hpy8I GTNNAC 9 cut(s) 748, 775, 892, 1058, 1244, 1639, 1783, 1822, 2170
HpyAV CCTTC 8 cut(s) 43, 61, 328, 978, 1810, 1999, 2125, 2233
HpyCH4III ACNGT 6 cut(s) 416, 814, 928, 940, 1615, 2211
HpyCH4IV ACGT 1 cut(s) 2130
HpyF10VI GCNNNNNNNGC 6 cut(s) 345, 581, 1021, 1222, 1547, 2212
HpySE526I ACGT 1 cut(s) 2130
Hsp92II CATG 6 cut(s) 137, 552, 707, 1111, 1445, 1604
HspAI GCGC 2 cut(s) 1223, 1480
Kzo9I GATC 4 cut(s) 400, 443, 789, 1080
LguI GCTCTTC 1 cut(s) 295
LmnI GCTCC 1 cut(s) 864
Lsp1109I GCAGC 4 cut(s) 1180, 1680, 2108, 2140
LweI GCATC 3 cut(s) 1861, 2214, 2224
MaeI CTAG 9 cut(s) 471, 581, 693, 1182, 1769, 1830, 1842, 2018, 2229
MaeII ACGT 1 cut(s) 2130
MaeIII GTNAC 5 cut(s) 266, 1144, 1437, 1458, 1472
MalI GATC 4 cut(s) 402, 445, 791, 1082
MboI GATC 4 cut(s) 400, 443, 789, 1080
MfeI CAATTG 1 cut(s) 1653
MflI RGATCY 4 cut(s) 400, 443, 789, 1080
MhlI GDGCHC 3 cut(s) 341, 861, 1213
MlyI GAGTC 3 cut(s) 522, 1141, 2169
MmeI TCCRAC 2 cut(s) 1196, 1472
Mph1103I ATGCAT 1 cut(s) 1026
MroXI GAANNNNTTC 3 cut(s) 71, 1852, 2247
MslI CAYNNNNRTG 6 cut(s) 414, 553, 708, 1029, 1725, 2075
MspA1I CMGCKG 1 cut(s) 2099
MspI CCGG 2 cut(s) 700, 1884
MspR9I CCNGG 1 cut(s) 1885
MunI CAATTG 1 cut(s) 1653
Mva1269I GAATGC 1 cut(s) 148
MvnI CGCG 1 cut(s) 1791
MwoI GCNNNNNNNGC 6 cut(s) 345, 581, 1021, 1222, 1547, 2212
NciI CCSGG 1 cut(s) 1885
NcoI CCATGG 2 cut(s) 133, 548
NdeI CATATG 3 cut(s) 685, 1026, 1219
NdeII GATC 4 cut(s) 400, 443, 789, 1080
NheI GCTAGC 1 cut(s) 470
NlaIII CATG 6 cut(s) 137, 552, 707, 1111, 1445, 1604
NlaIV GGNNCC 6 cut(s) 116, 666, 860, 1401, 1433, 2066
NmuCI GTSAC 4 cut(s) 266, 1144, 1437, 1472
NsbI TGCGCA 1 cut(s) 1224
NsiI ATGCAT 1 cut(s) 1026
NspI RCATGY 1 cut(s) 1445
OliI CACNNNNGTG 1 cut(s) 414
PaqCI CACCTGC 1 cut(s) 1387
PciI ACATGT 1 cut(s) 1441
PciSI GCTCTTC 1 cut(s) 295
PctI GAATGC 1 cut(s) 148
PdmI GAANNNNTTC 3 cut(s) 71, 1852, 2247
PflMI CCANNNNNTGG 1 cut(s) 153
PkrI GCNGC 4 cut(s) 1195, 1695, 2098, 2155
PleI GAGTC 3 cut(s) 521, 1141, 2168
PpsI GAGTC 3 cut(s) 521, 1141, 2168
PscI ACATGT 1 cut(s) 1441
PshAI GACNNNNGTC 1 cut(s) 512
PshBI ATTAAT 1 cut(s) 608
PsiI TTATAA 1 cut(s) 1343
PspEI GGTNACC 1 cut(s) 1458
PspFI CCCAGC 1 cut(s) 1464
PspN4I GGNNCC 6 cut(s) 116, 666, 860, 1401, 1433, 2066
PspPI GGNCC 5 cut(s) 115, 573, 775, 1169, 1431
PstI CTGCAG 2 cut(s) 649, 1398
PsuI RGATCY 4 cut(s) 400, 443, 789, 1080
RsaI GTAC 5 cut(s) 284, 724, 925, 942, 1666
RsaNI GTAC 5 cut(s) 283, 723, 924, 941, 1665
RseI CAYNNNNRTG 6 cut(s) 414, 553, 708, 1029, 1725, 2075
SalI GTCGAC 1 cut(s) 1637
SapI GCTCTTC 1 cut(s) 295
SatI GCNGC 4 cut(s) 1194, 1694, 2097, 2154
Sau3AI GATC 4 cut(s) 400, 443, 789, 1080
Sau96I GGNCC 5 cut(s) 115, 573, 775, 1169, 1431
SchI GAGTC 3 cut(s) 522, 1141, 2169
ScrFI CCNGG 1 cut(s) 1885
SduI GDGCHC 3 cut(s) 341, 861, 1213
SfaNI GCATC 3 cut(s) 1861, 2214, 2224
SfcI CTRYAG 5 cut(s) 262, 276, 645, 1394, 2207
SinI GGWCC 4 cut(s) 115, 775, 1169, 1431
SmiMI CAYNNNNRTG 6 cut(s) 414, 553, 708, 1029, 1725, 2075
SmlI CTYRAG 1 cut(s) 1268
SmoI CTYRAG 1 cut(s) 1268
SsiI CCGC 3 cut(s) 427, 1333, 2099
SspI AATATT 1 cut(s) 1259
SspMI CTAG 9 cut(s) 471, 581, 693, 1182, 1769, 1830, 1842, 2018, 2229
StyD4I CCNGG 1 cut(s) 1883
StyI CCWWGG 4 cut(s) 133, 396, 548, 2228
TaaI ACNGT 6 cut(s) 416, 814, 928, 940, 1615, 2211
TaiI ACGT 1 cut(s) 2133
TaqI TCGA 5 cut(s) 240, 1284, 1638, 1725, 2222
TatI WGTACW 2 cut(s) 923, 940
TscAI CASTG 5 cut(s) 82, 421, 429, 481, 806
TseFI GTSAC 4 cut(s) 266, 1144, 1437, 1472
TseI GCWGC 4 cut(s) 1193, 1693, 2096, 2153
Tsp45I GTSAC 4 cut(s) 266, 1144, 1437, 1472
TspDTI ATGAA 8 cut(s) 17, 318, 633, 702, 1089, 1791, 1974, 2014
TspGWI ACGGA 2 cut(s) 555, 1090
TspRI CASTG 5 cut(s) 82, 421, 429, 481, 806
Van91I CCANNNNNTGG 1 cut(s) 153
VpaK11BI GGWCC 4 cut(s) 115, 775, 1169, 1431
VspI ATTAAT 1 cut(s) 608
XapI RAATTY 4 cut(s) 14, 482, 596, 653
XbaI TCTAGA 2 cut(s) 1768, 2017
XceI RCATGY 1 cut(s) 1445
XcmI CCANNNNNNNNNTGG 2 cut(s) 1832, 2058
XmaJI CCTAGG 1 cut(s) 2228
XmiI GTMKAC 4 cut(s) 747, 891, 1638, 1821
XmnI GAANNNNTTC 3 cut(s) 71, 1852, 2247
XspI CTAG 9 cut(s) 471, 581, 693, 1182, 1769, 1830, 1842, 2018, 2229
Zsp2I ATGCAT 1 cut(s) 1026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.