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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 912 |
| Acc16I | TGCGCA | 2 cut(s) | 1148, 1737 |
| AccB1I | GGYRCC | 1 cut(s) | 1312 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1052, 1671 |
| AccBSI | CCGCTC | 1 cut(s) | 646 |
| AccI | GTMKAC | 1 cut(s) | 1779 |
| AciI | CCGC | 3 cut(s) | 644, 1235, 1874 |
| AcoI | YGGCCR | 2 cut(s) | 1178, 1244 |
| AcsI | RAATTY | 3 cut(s) | 583, 1216, 1883 |
| AcuI | CTGAAG | 2 cut(s) | 71, 1868 |
| AfaI | GTAC | 4 cut(s) | 430, 465, 784, 1459 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1052, 1421, 1671 |
| AgsI | TTSAA | 6 cut(s) | 77, 90, 757, 1640, 1679, 1729 |
| AjnI | CCWGG | 5 cut(s) | 333, 651, 921, 1818, 1833 |
| Alw26I | GTCTC | 8 cut(s) | 307, 406, 625, 724, 1067, 1132, 1492, 1684 |
| AoxI | GGCC | 2 cut(s) | 1178, 1244 |
| ApeKI | GCWGC | 6 cut(s) | 44, 118, 763, 984, 1056, 1514 |
| ApoI | RAATTY | 3 cut(s) | 583, 1216, 1883 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 422 |
| AspLEI | GCGC | 3 cut(s) | 1149, 1270, 1738 |
| AspS9I | GGNCC | 5 cut(s) | 323, 641, 740, 1033, 1831 |
| AsuC2I | CCSGG | 1 cut(s) | 20 |
| AsuHPI | GGTGA | 4 cut(s) | 127, 398, 1517, 1730 |
| AvaII | GGWCC | 5 cut(s) | 323, 641, 740, 1033, 1831 |
| BaeGI | GKGCMC | 1 cut(s) | 1427 |
| BalI | TGGCCA | 2 cut(s) | 1180, 1246 |
| BanI | GGYRCC | 1 cut(s) | 1312 |
| BbsI | GAAGAC | 1 cut(s) | 1626 |
| BbvI | GCAGC | 6 cut(s) | 31, 130, 775, 996, 1068, 1501 |
| BceAI | ACGGC | 1 cut(s) | 1037 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 846, 880 |
| BciT130I | CCWGG | 5 cut(s) | 335, 653, 923, 1820, 1835 |
| BcnI | CCSGG | 1 cut(s) | 20 |
| BcoDI | GTCTC | 8 cut(s) | 307, 406, 625, 724, 1067, 1132, 1492, 1684 |
| BfaI | CTAG | 3 cut(s) | 27, 492, 1502 |
| BfmI | CTRYAG | 2 cut(s) | 855, 1826 |
| BisI | GCNGC | 7 cut(s) | 45, 119, 764, 985, 1057, 1515, 1874 |
| BlsI | GCNGC | 7 cut(s) | 46, 120, 765, 986, 1058, 1516, 1875 |
| BmcAI | AGTACT | 1 cut(s) | 1459 |
| Bme1390I | CCNGG | 6 cut(s) | 20, 335, 653, 923, 1820, 1835 |
| Bme18I | GGWCC | 5 cut(s) | 323, 641, 740, 1033, 1831 |
| BmgT120I | GGNCC | 5 cut(s) | 323, 641, 740, 1033, 1831 |
| BmiI | GGNNCC | 3 cut(s) | 324, 642, 1314 |
| BmrFI | CCNGG | 6 cut(s) | 20, 335, 653, 923, 1820, 1835 |
| BmrI | ACTGGG | 1 cut(s) | 1503 |
| BmsI | GCATC | 1 cut(s) | 1462 |
| BmuI | ACTGGG | 1 cut(s) | 1503 |
| BpiI | GAAGAC | 1 cut(s) | 1626 |
| BpmI | CTGGAG | 2 cut(s) | 81, 1811 |
| BpuEI | CTTGAG | 1 cut(s) | 1889 |
| BpuMI | CCSGG | 1 cut(s) | 20 |
| BsaAI | YACGTR | 1 cut(s) | 149 |
| BsaBI | GATNNNNATC | 1 cut(s) | 912 |
| BsaI | GGTCTC | 1 cut(s) | 724 |
| BsaJI | CCNNGG | 2 cut(s) | 318, 1271 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1396, 1426, 1489, 1519 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1052, 1421, 1671 |
| Bse1I | ACTGG | 4 cut(s) | 388, 1400, 1498, 1676 |
| Bse8I | GATNNNNATC | 1 cut(s) | 912 |
| BseBI | CCWGG | 5 cut(s) | 335, 653, 923, 1820, 1835 |
| BseDI | CCNNGG | 2 cut(s) | 318, 1271 |
| BseGI | GGATG | 7 cut(s) | 15, 196, 514, 665, 877, 1228, 1360 |
| BseJI | GATNNNNATC | 1 cut(s) | 912 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1052, 1421, 1671 |
| BseMII | CTCAG | 2 cut(s) | 825, 1430 |
| BseNI | ACTGG | 4 cut(s) | 388, 1400, 1498, 1676 |
| BseRI | GAGGAG | 1 cut(s) | 1404 |
| BseSI | GKGCMC | 1 cut(s) | 1427 |
| BseXI | GCAGC | 6 cut(s) | 31, 130, 775, 996, 1068, 1501 |
| BsgI | GTGCAG | 1 cut(s) | 1143 |
| BshFI | GGCC | 2 cut(s) | 1180, 1246 |
| BshNI | GGYRCC | 1 cut(s) | 1312 |
| BsiSI | CCGG | 1 cut(s) | 19 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1052, 1421, 1671 |
| BsmAI | GTCTC | 8 cut(s) | 307, 406, 625, 724, 1067, 1132, 1492, 1684 |
| BsmI | GAATGC | 1 cut(s) | 120 |
| BsnI | GGCC | 2 cut(s) | 1180, 1246 |
| Bso31I | GGTCTC | 1 cut(s) | 724 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1427 |
| Bsp1407I | TGTACA | 1 cut(s) | 463 |
| Bsp143I | GATC | 1 cut(s) | 1447 |
| BspACI | CCGC | 3 cut(s) | 644, 1235, 1874 |
| BspANI | GGCC | 2 cut(s) | 1180, 1246 |
| BspCNI | CTCAG | 2 cut(s) | 824, 1429 |
| BspLI | GGNNCC | 3 cut(s) | 324, 642, 1314 |
| BspMAI | CTGCAG | 1 cut(s) | 859 |
| BspT107I | GGYRCC | 1 cut(s) | 1312 |
| BspTNI | GGTCTC | 1 cut(s) | 724 |
| BsrBI | CCGCTC | 1 cut(s) | 646 |
| BsrGI | TGTACA | 1 cut(s) | 463 |
| BsrI | ACTGG | 4 cut(s) | 388, 1400, 1498, 1676 |
| BssECI | CCNNGG | 2 cut(s) | 318, 1271 |
| BssMI | GATC | 1 cut(s) | 1447 |
| BssNAI | GTATAC | 1 cut(s) | 1780 |
| BssT1I | CCWWGG | 2 cut(s) | 318, 1271 |
| Bst1107I | GTATAC | 1 cut(s) | 1780 |
| Bst2UI | CCWGG | 5 cut(s) | 335, 653, 923, 1820, 1835 |
| Bst4CI | ACNGT | 8 cut(s) | 156, 284, 293, 602, 977, 1593, 1695, 1771 |
| Bst6I | CTCTTC | 1 cut(s) | 1005 |
| BstAUI | TGTACA | 1 cut(s) | 463 |
| BstBAI | YACGTR | 1 cut(s) | 149 |
| BstC8I | GCNNGC | 9 cut(s) | 167, 485, 836, 1200, 1244, 1311, 1512, 1543, 1844 |
| BstDEI | CTNAG | 5 cut(s) | 636, 811, 1328, 1416, 1454 |
| BstF5I | GGATG | 7 cut(s) | 15, 196, 514, 665, 877, 1228, 1360 |
| BstHHI | GCGC | 3 cut(s) | 1149, 1270, 1738 |
| BstKTI | GATC | 1 cut(s) | 1450 |
| BstMAI | GTCTC | 8 cut(s) | 307, 406, 625, 724, 1067, 1132, 1492, 1684 |
| BstMBI | GATC | 1 cut(s) | 1447 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1481, 1873 |
| BstNI | CCWGG | 5 cut(s) | 335, 653, 923, 1820, 1835 |
| BstNSI | RCATGY | 2 cut(s) | 933, 1742 |
| BstSCI | CCNGG | 6 cut(s) | 18, 333, 651, 921, 1818, 1833 |
| BstSFI | CTRYAG | 2 cut(s) | 855, 1826 |
| BstSLI | GKGCMC | 1 cut(s) | 1427 |
| BstSNI | TACGTA | 1 cut(s) | 149 |
| BstV1I | GCAGC | 6 cut(s) | 31, 130, 775, 996, 1068, 1501 |
| BstV2I | GAAGAC | 1 cut(s) | 1626 |
| BstZ17I | GTATAC | 1 cut(s) | 1780 |
| BsuRI | GGCC | 2 cut(s) | 1180, 1246 |
| BtsCI | GGATG | 7 cut(s) | 15, 196, 514, 665, 877, 1228, 1360 |
| BtsI | GCAGTG | 1 cut(s) | 940 |
| BtsIMutI | CAGTG | 7 cut(s) | 289, 381, 699, 940, 1424, 1692, 1776 |
| Cac8I | GCNNGC | 9 cut(s) | 167, 485, 836, 1200, 1244, 1311, 1512, 1543, 1844 |
| CfoI | GCGC | 3 cut(s) | 1149, 1270, 1738 |
| Cfr13I | GGNCC | 5 cut(s) | 323, 641, 740, 1033, 1831 |
| CseI | GACGC | 1 cut(s) | 1315 |
| CsiI | ACCWGGT | 3 cut(s) | 333, 651, 921 |
| Csp6I | GTAC | 4 cut(s) | 429, 464, 783, 1458 |
| CviAII | CATG | 7 cut(s) | 221, 236, 539, 554, 896, 930, 1739 |
| CviQI | GTAC | 4 cut(s) | 429, 464, 783, 1458 |
| DdeI | CTNAG | 5 cut(s) | 636, 811, 1328, 1416, 1454 |
| DpnI | GATC | 1 cut(s) | 1449 |
| DpnII | GATC | 1 cut(s) | 1447 |
| DraI | TTTAAA | 1 cut(s) | 1522 |
| EaeI | YGGCCR | 2 cut(s) | 1178, 1244 |
| Eam1104I | CTCTTC | 1 cut(s) | 1005 |
| EarI | CTCTTC | 1 cut(s) | 1005 |
| Eco105I | TACGTA | 1 cut(s) | 149 |
| Eco130I | CCWWGG | 2 cut(s) | 318, 1271 |
| Eco31I | GGTCTC | 1 cut(s) | 724 |
| Eco47I | GGWCC | 5 cut(s) | 323, 641, 740, 1033, 1831 |
| Eco57I | CTGAAG | 2 cut(s) | 71, 1868 |
| EcoRII | CCWGG | 5 cut(s) | 333, 651, 921, 1818, 1833 |
| EcoT14I | CCWWGG | 2 cut(s) | 318, 1271 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| ErhI | CCWWGG | 2 cut(s) | 318, 1271 |
| FaeI | CATG | 7 cut(s) | 224, 239, 542, 557, 899, 933, 1742 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 729, 761 |
| FatI | CATG | 7 cut(s) | 220, 235, 538, 553, 895, 929, 1738 |
| FblI | GTMKAC | 1 cut(s) | 1779 |
| Fnu4HI | GCNGC | 7 cut(s) | 45, 119, 764, 985, 1057, 1515, 1874 |
| FokI | GGATG | 7 cut(s) | 2, 203, 521, 652, 884, 1235, 1367 |
| Fsp4HI | GCNGC | 7 cut(s) | 45, 119, 764, 985, 1057, 1515, 1874 |
| FspBI | CTAG | 3 cut(s) | 27, 492, 1502 |
| FspI | TGCGCA | 2 cut(s) | 1148, 1737 |
| GlaI | GCGC | 3 cut(s) | 1148, 1269, 1737 |
| GluI | GCNGC | 7 cut(s) | 45, 119, 764, 985, 1057, 1515, 1874 |
| GsuI | CTGGAG | 2 cut(s) | 81, 1811 |
| HaeIII | GGCC | 2 cut(s) | 1180, 1246 |
| HapII | CCGG | 1 cut(s) | 19 |
| HgaI | GACGC | 1 cut(s) | 1315 |
| HhaI | GCGC | 3 cut(s) | 1149, 1270, 1738 |
| Hin1II | CATG | 7 cut(s) | 224, 239, 542, 557, 899, 933, 1742 |
| Hin6I | GCGC | 3 cut(s) | 1147, 1268, 1736 |
| HinP1I | GCGC | 3 cut(s) | 1147, 1268, 1736 |
| HincII | GTYRAC | 5 cut(s) | 241, 340, 559, 658, 943 |
| HindII | GTYRAC | 5 cut(s) | 241, 340, 559, 658, 943 |
| HindIII | AAGCTT | 1 cut(s) | 1722 |
| HinfI | GANTC | 7 cut(s) | 38, 86, 182, 449, 800, 1082, 1396 |
| HpaI | GTTAAC | 4 cut(s) | 241, 340, 559, 943 |
| HpaII | CCGG | 1 cut(s) | 19 |
| HphI | GGTGA | 4 cut(s) | 127, 398, 1517, 1730 |
| Hpy188III | TCNNGA | 5 cut(s) | 60, 90, 917, 1790, 1899 |
| HpyAV | CCTTC | 5 cut(s) | 506, 960, 1221, 1342, 1873 |
| HpyCH4III | ACNGT | 8 cut(s) | 156, 284, 293, 602, 977, 1593, 1695, 1771 |
| HpyCH4IV | ACGT | 2 cut(s) | 148, 1385 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1481, 1873 |
| HpyF3I | CTNAG | 5 cut(s) | 636, 811, 1328, 1416, 1454 |
| HpySE526I | ACGT | 2 cut(s) | 148, 1385 |
| Hsp92II | CATG | 7 cut(s) | 224, 239, 542, 557, 899, 933, 1742 |
| HspAI | GCGC | 3 cut(s) | 1147, 1268, 1736 |
| KspAI | GTTAAC | 4 cut(s) | 241, 340, 559, 943 |
| Kzo9I | GATC | 1 cut(s) | 1447 |
| LmnI | GCTCC | 1 cut(s) | 1822 |
| Lsp1109I | GCAGC | 6 cut(s) | 31, 130, 775, 996, 1068, 1501 |
| LweI | GCATC | 1 cut(s) | 1462 |
| MabI | ACCWGGT | 3 cut(s) | 333, 651, 921 |
| MaeI | CTAG | 3 cut(s) | 27, 492, 1502 |
| MaeII | ACGT | 2 cut(s) | 148, 1385 |
| MaeIII | GTNAC | 5 cut(s) | 368, 917, 925, 1334, 1402 |
| MalI | GATC | 1 cut(s) | 1449 |
| MbiI | CCGCTC | 1 cut(s) | 646 |
| MboI | GATC | 1 cut(s) | 1447 |
| MboII | GAAGA | 9 cut(s) | 64, 240, 558, 567, 914, 917, 1022, 1624, 1631 |
| MhlI | GDGCHC | 1 cut(s) | 1427 |
| MlsI | TGGCCA | 2 cut(s) | 1180, 1246 |
| MluCI | AATT | 8 cut(s) | 69, 583, 1142, 1216, 1317, 1360, 1700, 1883 |
| MluNI | TGGCCA | 2 cut(s) | 1180, 1246 |
| MlyI | GAGTC | 1 cut(s) | 1076 |
| MmeI | TCCRAC | 2 cut(s) | 1011, 1685 |
| MnlI | CCTC | 6 cut(s) | 151, 181, 499, 760, 862, 1425 |
| Mox20I | TGGCCA | 2 cut(s) | 1180, 1246 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroXI | GAANNNNTTC | 1 cut(s) | 422 |
| MscI | TGGCCA | 2 cut(s) | 1180, 1246 |
| Msp20I | TGGCCA | 2 cut(s) | 1180, 1246 |
| MspA1I | CMGCKG | 3 cut(s) | 359, 987, 1553 |
| MspI | CCGG | 1 cut(s) | 19 |
| MspR9I | CCNGG | 6 cut(s) | 20, 335, 653, 923, 1820, 1835 |
| Mva1269I | GAATGC | 1 cut(s) | 120 |
| MvaI | CCWGG | 5 cut(s) | 335, 653, 923, 1820, 1835 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1481, 1873 |
| NciI | CCSGG | 1 cut(s) | 20 |
| NdeII | GATC | 1 cut(s) | 1447 |
| NlaIII | CATG | 7 cut(s) | 224, 239, 542, 557, 899, 933, 1742 |
| NlaIV | GGNNCC | 3 cut(s) | 324, 642, 1314 |
| NmuCI | GTSAC | 4 cut(s) | 368, 917, 925, 1334 |
| NsbI | TGCGCA | 2 cut(s) | 1148, 1737 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 2 cut(s) | 933, 1742 |
| PctI | GAATGC | 1 cut(s) | 120 |
| PdmI | GAANNNNTTC | 1 cut(s) | 422 |
| PfeI | GAWTC | 6 cut(s) | 38, 86, 182, 449, 800, 1396 |
| PflFI | GACNNNGTC | 3 cut(s) | 221, 539, 923 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1052, 1671 |
| PkrI | GCNGC | 7 cut(s) | 46, 120, 765, 986, 1058, 1516, 1875 |
| PleI | GAGTC | 1 cut(s) | 1076 |
| PpsI | GAGTC | 1 cut(s) | 1076 |
| Ppu21I | YACGTR | 1 cut(s) | 149 |
| PsiI | TTATAA | 1 cut(s) | 912 |
| Psp6I | CCWGG | 5 cut(s) | 333, 651, 921, 1818, 1833 |
| PspGI | CCWGG | 5 cut(s) | 333, 651, 921, 1818, 1833 |
| PspN4I | GGNNCC | 3 cut(s) | 324, 642, 1314 |
| PspPI | GGNCC | 5 cut(s) | 323, 641, 740, 1033, 1831 |
| PstI | CTGCAG | 1 cut(s) | 859 |
| PsyI | GACNNNGTC | 3 cut(s) | 221, 539, 923 |
| PvuII | CAGCTG | 3 cut(s) | 359, 987, 1553 |
| RsaI | GTAC | 4 cut(s) | 430, 465, 784, 1459 |
| RsaNI | GTAC | 4 cut(s) | 429, 464, 783, 1458 |
| SatI | GCNGC | 7 cut(s) | 45, 119, 764, 985, 1057, 1515, 1874 |
| Sau3AI | GATC | 1 cut(s) | 1447 |
| Sau96I | GGNCC | 5 cut(s) | 323, 641, 740, 1033, 1831 |
| ScaI | AGTACT | 1 cut(s) | 1459 |
| SchI | GAGTC | 1 cut(s) | 1076 |
| ScrFI | CCNGG | 6 cut(s) | 20, 335, 653, 923, 1820, 1835 |
| SduI | GDGCHC | 1 cut(s) | 1427 |
| SexAI | ACCWGGT | 3 cut(s) | 333, 651, 921 |
| SfaNI | GCATC | 1 cut(s) | 1462 |
| SfcI | CTRYAG | 2 cut(s) | 855, 1826 |
| SinI | GGWCC | 5 cut(s) | 323, 641, 740, 1033, 1831 |
| SmlI | CTYRAG | 1 cut(s) | 1868 |
| SmoI | CTYRAG | 1 cut(s) | 1868 |
| SnaBI | TACGTA | 1 cut(s) | 149 |
| Sse9I | AATT | 8 cut(s) | 69, 583, 1142, 1216, 1317, 1360, 1700, 1883 |
| SsiI | CCGC | 3 cut(s) | 644, 1235, 1874 |
| SspI | AATATT | 1 cut(s) | 1732 |
| SspMI | CTAG | 3 cut(s) | 27, 492, 1502 |
| StyD4I | CCNGG | 6 cut(s) | 18, 333, 651, 921, 1818, 1833 |
| StyI | CCWWGG | 2 cut(s) | 318, 1271 |
| TaaI | ACNGT | 8 cut(s) | 156, 284, 293, 602, 977, 1593, 1695, 1771 |
| TaiI | ACGT | 2 cut(s) | 151, 1388 |
| TaqI | TCGA | 1 cut(s) | 416 |
| TasI | AATT | 8 cut(s) | 69, 583, 1142, 1216, 1317, 1360, 1700, 1883 |
| TatI | WGTACW | 2 cut(s) | 463, 1457 |
| TauI | GCSGC | 1 cut(s) | 1876 |
| TfiI | GAWTC | 6 cut(s) | 38, 86, 182, 449, 800, 1396 |
| TscAI | CASTG | 7 cut(s) | 289, 388, 706, 940, 1424, 1692, 1776 |
| TseFI | GTSAC | 4 cut(s) | 368, 917, 925, 1334 |
| TseI | GCWGC | 6 cut(s) | 44, 118, 763, 984, 1056, 1514 |
| Tsp45I | GTSAC | 4 cut(s) | 368, 917, 925, 1334 |
| TspRI | CASTG | 7 cut(s) | 289, 388, 706, 940, 1424, 1692, 1776 |
| Tth111I | GACNNNGTC | 3 cut(s) | 221, 539, 923 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1052, 1671 |
| VpaK11BI | GGWCC | 5 cut(s) | 323, 641, 740, 1033, 1831 |
| XapI | RAATTY | 3 cut(s) | 583, 1216, 1883 |
| XceI | RCATGY | 2 cut(s) | 933, 1742 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1254, 1668 |
| XmiI | GTMKAC | 1 cut(s) | 1779 |
| XmnI | GAANNNNTTC | 1 cut(s) | 422 |
| XspI | CTAG | 3 cut(s) | 27, 492, 1502 |
| ZrmI | AGTACT | 1 cut(s) | 1459 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |