Rmu_sc0005558.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005558.1
OG0000582
Physical Location & Seq
Reverse (-)
37971 .. 44800
6830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005558.1_g000005.1.cds

Sequence Viewer

Length: 4050 bp
atgacatggttcttagtatctcagaaattgcaagcggattttatacgtagtgatgtacaaacaacagaaatctccatagcatttacattgaaggaattagataatggtgattatggaccagatctagggcaacagcctgcttttgcatttcttcctctaagaacctatggcctgaagtttattgttcagggtgattttgttcttccttcatctagagaggaagtggatggagatagtccctggaaccagtggctattatcagaatttcctggtttatttgtcaatgctgagaggtctttttgttctcttccttgctttagagagaaccccgggagagcagtggcagcttatatgtcatttgttccacttgttggggaagtgcatgggtttttttcttctcttcctcgattaatcatttctaaattacggatgtcaaattgcttactcctggaaggaggaaataacgagtgggttcctccttgcaaggtcctaagaggttggaatgagcaggcccgattgcttctgcctgatagtttacttcgggagcatcttggccttgggttgttggataaaaatatagttctacctgattcacttgcaagagcacttggcattgcagactatggacccaaagttctgcttcaagttatggactccttatgtcgtttgcaaaatggcctcacatcaatgggactgggttggttgacctcttggctaagtgaactgtatgcaatgtcattcaatgcttctgtggaaacatcatttgactctgaacttggaatggatttgatagaagaactccgaaaaattccattcattcctctttcagatggtacatatggtgcagtagacaaagacccaatttggttacattttgatgccttgagcactgggtttgagggtcagcatggacttgagtcttttcctaacttgtatgctaatcttcgtattgtaagcgctgccttcctttcgacatcatgtgtagatatgtcatccatggatgtgactacaattgacaaacaaatacgtatgcttcgtagaattggtgtccagcagttgtccgcgcatgaaattgtcaaggtacacatcttgccagctatatctgataacagaaatgcagctagggataagaatttgatgaccgaatatctctgctttgtaatggttcacctacagtcgacctgctccgattgtcatggtgaaaaggaatgcataatgtcagaattacgaaataaagcttatgtactaacaaatcatggctttaaacgacctgctgagatatctattcatttcagtaaggaatatggaaatcctatcgacataaataagttgataaatatggtggatatgatgtggcatgaggttgacatctcctatttgaagcatccagttacaaagtcactccaatgtggactaacgaagtggagggaatttttccagcaaattggcatcgtggatttcgtgaaagtagttcacattgaaaaaggatttaatgatacatgtaaggacttggtttctcttggatcaaatgtcacagattgggagtcccctgaattggtcagtttattgtccctgttgaccagaactggcaacaaaaaaggctgtgaatatcttttacaggtgcttgatagtttatgggatgaatgctatcttgaaaaagctacaggctactgcgcttctaaagatgtagtggagaaaaagccttttaaatcttcatttataagcagcatctgtgatgcacaatgggtagtatcaacaatggatgatgcacttcactatcctagagatttataccatgactgtgatgcagtgcgctcggttcttggtccatctgctccattttctgttccaaagatagggagtggaaattttgcaagtgctatggggttcaagacattagtttctcttgacgatggtctagaggtattgaaactatggaggtgtgataacccattcagggccagcatagcgcaaatgttcaaattttacacattaatctggaatgaaatggccacttcgaagccaagagttttagaggagttccattccaaaccttctatttttgttccatatgcatctagctcaaggcatgaggatgtggtgtctggtacatttttatcccctgaggaagtatattggtatgattcgacttccttcgtggaccaaatcaagcagatacatcctcagtgcagcccaacaggtgttactcatggccccttgaataagacattgtgcaacttttatcctggccttcatgacttctttgttgatggatgtggagtacctgagacccctcctctccgtagctacctacagattttgctgcatatatcaaaggttgctctgccttcacaagcagctaatgccgtttttcaagtctttcttaagtggactgatggactgaaatcaggaatgagccctgaggatattgtttacattagagattctcttaagaagatggaatgcatggtgcttcctactgtacatgataagtgggtttctttacatccatccttcggtcttgtatgctggtgtgatgagaataaattaagcaagcagtttaagcatttggatggtattgattttttatactttggtcaattgaccaaggacaatgaagagatactacgtacgaaagtgtcgaacctcatgcaaactttagggattcctgctctttcacaggttgtgactcgtgaggcaatatattatggcctgcaagacagtagcgatgaagctgcattggtaaattcagctcttccatatgcacagcgctacttgcatagtctacacccagataaatattctcaactcaagcagtctggatttgatatcctaaattgtttgcaagtagtagttgttgaagagctgtactatcgaaatgttataaaagttgtgggaagtgaatctaagaagcgggttgcatgtagttgtcttctgaagggtagcatgttgtatacaacccgagaatcagattctcacacattatttatggaactttctcgtttgttttttaatggaaatcctgaactgcacttggcgaatttccttcatatcatcacaaccatggaaaaatcaggtttgaatgaggagcagatagagttatttatcctcaatagccaaaaggtgccgaagcttcctgatggggaatgtgtttggtccctttcttctttgcactcattgactgagtatgatgaatcactccagacaagtaatacttcaatggaagcaaatgaacaaaacagttggaaacccaaaaggaaagcagaaaactggccgcctgttgattggaaaactgcaccagggtttgcgtatgctcgtgcacatggttttaagacacagccaacagttttacagccctatggcgcgttacaaaataagatggatgatgattctgaaggaattgttggacaaatagataatttggctcacagttctgtggatgctaattggacgttggaagattattcagcaactgcgtctttagctttgccagacaataatgatttgctagaacaccgtggggagcatttcaatgactttgactttgcatcacatattgaatttgatcccatcaatctcggtcttgtttccgaccctccagagttgggctcatccaatgttggcaagagagagcagcttagatatggcaaacccaatgctacacaagcaattatgactgggagacttggagagcttgttgcttttaactattttgttgagaaaggcggcaagtcagcagtcaagtgggttaatgagcacaatgaaacagggctaccctatgacatagtgctgggggagaacaataaggagtacattgaagtgaaagcaacgaaatctgcaagaaaagattggtttgaaatatcaatgaatgagttgcaatttgcagttgagaaaggtgaagcttttagcatagctcatgtcatcttattagataataatgttgcaaaggtcagagtgtacaacaatctggcaaagttatgccagcttcgccaactgaagttagctgtattggtgcctgtgcagcagaaggaattcgccattgtatcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3883

Protein Analysis

1349

Amino Acids

151.91

Weight (kDa)

5.46

Isoelectric Point (pI)

42.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08300 AT1G08300 AT1G08300 AT4G13750
fragaria_vesca FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_4g13620 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660
malus_domestica MD04G1012800.v1.1 MD04G1012900.v1.1 MD04G1013100.v1.1 MD04G1013300.v1.1
prunus_persica Prupe.1G159000_v2.0.a1 Prupe.1G159100_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G358100_v2.0.a1
pyrus_communis pycom04g01020 pycom04g01030
rosa_chinensis RchiOBHm_Chr4g0414341 RchiOBHm_Chr4g0414351 RchiOBHm_Chr6g0275261 RchiOBHm_Chr7g0213881 RchiOBHm_Chr7g0213891
rosa_laevigata RLG00000008153 RLG00000008155 RLG00000013477
rosa_multiflora Rmu_co8510163.1_g000001 Rmu_sc0004087.1_g000027 Rmu_sc0005196.1_g000014 Rmu_sc0005558.1_g000005 Rmu_sc0005558.1_g000006 Rmu_sc0008100.1_g000005 Rmu_sc0008560.1_g000005
rosa_roxburghii Rroxscaffold_5G00358210 Rroxscaffold_5G00358220 Rroxscaffold_7G00187920 Rroxscaffold_7G00187930 Rroxscaffold_7G00193450
rosa_rugosa Rorug04G0127100 Rorug04G0127200 Rorug04G0127300 Rorug04G0127400 Rorug06G0090600
rosa_samantha Rh4AG185200 Rh4AG185300 Rh4AG185500 Rh4BG184700 Rh4BG184800 Rh4CG198000 Rh4CG198100 Rh4DG182400 Rh4DG182600 Rh6AG204100 Rh6BG207000 Rh6CG209600 Rh6DG200000 Rh7AG277400 Rh7CG296400 Rh7CG296500
rosa_wichuraiana Rw4G015850 Rw4G015860 Rw6G017730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1721, 2885
Acc36I ACCTGC 2 cut(s) 1190, 1279
AccB1I GGYRCC 2 cut(s) 3124, 4012
AccB7I CCANNNNNTGG 1 cut(s) 371
AccI GTMKAC 4 cut(s) 849, 1178, 2785, 2954
AccII CGCG 2 cut(s) 1064, 3365
AciI CCGC 5 cut(s) 35, 1062, 2914, 3275, 3726
AclWI GGATC 2 cut(s) 1531, 3560
AcoI YGGCCR 2 cut(s) 2010, 3272
AcuI CTGAAG 4 cut(s) 194, 2957, 3414, 4016
AfeI AGCGCT 2 cut(s) 958, 2771
AfiI CCNNNNNNNGG 7 cut(s) 125, 371, 1555, 1856, 1957, 2516, 3605
AflII CTTAAG 2 cut(s) 2384, 2450
AflIII ACRYGT 1 cut(s) 1499
AjnI CCWGG 5 cut(s) 239, 268, 447, 2245, 3298
AjuI GAANNNNNNNTTGG 2 cut(s) 3387, 3419
AloI GAACNNNNNNTCC 2 cut(s) 618, 650
Alw21I GWGCWC 4 cut(s) 607, 890, 3322, 3759
Alw26I GTCTC 2 cut(s) 2282, 3676
Alw44I GTGCAC 1 cut(s) 3318
AlwI GGATC 2 cut(s) 1531, 3560
AlwNI CAGNNNCTG 2 cut(s) 1731, 3473
Ama87I CYCGRG 2 cut(s) 329, 2961
Aor51HI AGCGCT 2 cut(s) 958, 2771
ApaLI GTGCAC 1 cut(s) 3318
ArsI GACNNNNNNTTYG 2 cut(s) 3527, 3559
AseI ATTAAT 2 cut(s) 410, 1994
Asp700I GAANNNNTTC 1 cut(s) 4031
AspLEI GCGC 7 cut(s) 959, 1066, 1676, 1815, 1972, 2772, 3365
AspS9I GGNCC 9 cut(s) 116, 487, 511, 626, 1826, 1959, 2161, 2213, 3156
AsuC2I CCSGG 2 cut(s) 330, 331
AsuHPI GGTGA 5 cut(s) 119, 203, 1160, 1211, 3908
AsuII TTCGAA 1 cut(s) 2018
AvaI CYCGRG 2 cut(s) 329, 2961
AvaII GGWCC 6 cut(s) 116, 487, 626, 1826, 2161, 3156
AxyI CCTNAGG 2 cut(s) 2124, 2421
BaeGI GKGCMC 1 cut(s) 3322
BalI TGGCCA 1 cut(s) 2012
BanI GGYRCC 2 cut(s) 3124, 4012
BanII GRGCYC 2 cut(s) 2420, 3611
BarI GAAGNNNNNNTAC 2 cut(s) 2610, 2642
BauI CACGAG 2 cut(s) 2691, 3315
BbsI GAAGAC 1 cut(s) 2924
Bbv12I GWGCWC 4 cut(s) 607, 890, 3322, 3759
BceAI ACGGC 1 cut(s) 2351
BcgI CGANNNNNNTGC 6 cut(s) 1797, 1831, 2632, 2666, 2717, 2751
BciT130I CCWGG 5 cut(s) 241, 270, 449, 2247, 3300
BcnI CCSGG 2 cut(s) 330, 331
BcoDI GTCTC 2 cut(s) 2282, 3676
BfaI CTAG 7 cut(s) 125, 213, 1122, 1782, 1919, 2079, 3509
BfmI CTRYAG 3 cut(s) 1172, 1662, 2312
BfoI RGCGCY 2 cut(s) 960, 2773
BfrI CTTAAG 2 cut(s) 2384, 2450
BfuAI ACCTGC 2 cut(s) 1190, 1279
BglII AGATCT 1 cut(s) 121
Bme1390I CCNGG 7 cut(s) 241, 270, 330, 331, 449, 2247, 3300
Bme18I GGWCC 6 cut(s) 116, 487, 626, 1826, 2161, 3156
BmeT110I CYCGRG 2 cut(s) 329, 2961
BmgT120I GGNCC 9 cut(s) 116, 487, 511, 626, 1826, 1959, 2161, 2213, 3156
BmiI GGNNCC 7 cut(s) 245, 474, 628, 2215, 3126, 3158, 4014
BmrFI CCNGG 7 cut(s) 241, 270, 330, 331, 449, 2247, 3300
BmrI ACTGGG 3 cut(s) 704, 900, 3687
BmuI ACTGGG 3 cut(s) 704, 900, 3687
BoxI GACNNNNGTC 2 cut(s) 916, 1914
BpiI GAAGAC 1 cut(s) 2924
BplI GAGNNNNNCTC 2 cut(s) 3593, 3625
BpmI CTGGAG 2 cut(s) 3185, 3582
Bpu14I TTCGAA 1 cut(s) 2018
BpuEI CTTGAG 4 cut(s) 904, 935, 2068, 2795
BpuMI CCSGG 2 cut(s) 330, 331
BsaAI YACGTR 3 cut(s) 47, 1028, 2630
BsaI GGTCTC 1 cut(s) 2282
BsaJI CCNNGG 9 cut(s) 239, 328, 329, 556, 996, 2607, 3063, 3299, 3517
BsaXI ACNNNNNCTCC 2 cut(s) 3681, 3711
Bsc4I CCNNNNNNNGG 7 cut(s) 125, 371, 1555, 1856, 1957, 2516, 3605
Bse1I ACTGG 7 cut(s) 247, 699, 895, 1388, 1591, 3275, 3682
Bse21I CCTNAGG 2 cut(s) 2124, 2421
Bse3DI GCAATG 2 cut(s) 612, 738
BseBI CCWGG 5 cut(s) 241, 270, 449, 2247, 3300
BseDI CCNNGG 9 cut(s) 239, 328, 329, 556, 996, 2607, 3063, 3299, 3517
BseLI CCNNNNNNNGG 7 cut(s) 125, 371, 1555, 1856, 1957, 2516, 3605
BseMI GCAATG 2 cut(s) 612, 738
BseMII CTCAG 8 cut(s) 35, 279, 1266, 2115, 2198, 2277, 2412, 3174
BseNI ACTGG 7 cut(s) 247, 699, 895, 1388, 1591, 3275, 3682
BseRI GAGGAG 3 cut(s) 2051, 2286, 3101
BseSI GKGCMC 1 cut(s) 3322
BseYI CCCAGC 1 cut(s) 3790
BsgI GTGCAG 5 cut(s) 864, 2209, 3014, 3279, 4040
Bsh1236I CGCG 2 cut(s) 1064, 3365
BshNI GGYRCC 2 cut(s) 3124, 4012
BsiHKAI GWGCWC 4 cut(s) 607, 890, 3322, 3759
BsiHKCI CYCGRG 2 cut(s) 329, 2961
BsiSI CCGG 1 cut(s) 330
BsiWI CGTACG 1 cut(s) 2630
BslFI GGGAC 5 cut(s) 222, 705, 1531, 1555, 3142
BslI CCNNNNNNNGG 7 cut(s) 125, 371, 1555, 1856, 1957, 2516, 3605
BsmAI GTCTC 2 cut(s) 2282, 3676
BsmFI GGGAC 5 cut(s) 222, 705, 1531, 1555, 3142
BsmI GAATGC 3 cut(s) 1214, 1649, 2468
Bso31I GGTCTC 1 cut(s) 2282
BsoBI CYCGRG 2 cut(s) 329, 2961
Bsp119I TTCGAA 1 cut(s) 2018
Bsp1286I GDGCHC 6 cut(s) 607, 890, 2420, 3322, 3611, 3759
Bsp1407I TGTACA 3 cut(s) 55, 2482, 3957
Bsp143I GATC 3 cut(s) 121, 1523, 3565
Bsp19I CCATGG 2 cut(s) 996, 3063
BspACI CCGC 5 cut(s) 35, 1062, 2914, 3275, 3726
BspCNI CTCAG 8 cut(s) 34, 280, 1267, 2116, 2197, 2278, 2413, 3175
BspFNI CGCG 2 cut(s) 1064, 3365
BspHI TCATGA 1 cut(s) 2254
BspLI GGNNCC 7 cut(s) 245, 474, 628, 2215, 3126, 3158, 4014
BspMI ACCTGC 2 cut(s) 1190, 1279
BspPI GGATC 2 cut(s) 1531, 3560
BspQI GCTCTTC 2 cut(s) 2760, 2856
BspT104I TTCGAA 1 cut(s) 2018
BspT107I GGYRCC 2 cut(s) 3124, 4012
BspTI CTTAAG 2 cut(s) 2384, 2450
BspTNI GGTCTC 1 cut(s) 2282
BsrDI GCAATG 2 cut(s) 612, 738
BsrGI TGTACA 3 cut(s) 55, 2482, 3957
BsrI ACTGG 7 cut(s) 247, 699, 895, 1388, 1591, 3275, 3682
BssECI CCNNGG 9 cut(s) 239, 328, 329, 556, 996, 2607, 3063, 3299, 3517
BssMI GATC 3 cut(s) 121, 1523, 3565
BssNAI GTATAC 1 cut(s) 2955
BssSI CACGAG 2 cut(s) 2691, 3315
BssT1I CCWWGG 4 cut(s) 556, 996, 2607, 3063
Bst1107I GTATAC 1 cut(s) 2955
Bst2BI CACGAG 2 cut(s) 2691, 3315
Bst2UI CCWGG 5 cut(s) 241, 270, 449, 2247, 3300
Bst4CI ACNGT 9 cut(s) 726, 1176, 1802, 2482, 2723, 3242, 3346, 3431, 3518
Bst6I CTCTTC 5 cut(s) 312, 405, 2613, 2760, 2856
BstAFI CTTAAG 2 cut(s) 2384, 2450
BstAPI GCANNNNNTGC 1 cut(s) 2363
BstAUI TGTACA 3 cut(s) 55, 2482, 3957
BstBAI YACGTR 3 cut(s) 47, 1028, 2630
BstBI TTCGAA 1 cut(s) 2018
BstC8I GCNNGC 8 cut(s) 33, 138, 510, 1095, 1963, 2555, 2714, 3983
BstDSI CCRYGG 3 cut(s) 996, 3063, 3517
BstFNI CGCG 2 cut(s) 1064, 3365
BstH2I RGCGCY 2 cut(s) 960, 2773
BstHHI GCGC 7 cut(s) 959, 1066, 1676, 1815, 1972, 2772, 3365
BstKTI GATC 3 cut(s) 124, 1526, 3568
BstMAI GTCTC 2 cut(s) 2282, 3676
BstMBI GATC 3 cut(s) 121, 1523, 3565
BstMWI GCNNNNNNNGC 9 cut(s) 344, 1967, 2363, 2563, 2776, 3482, 3665, 3987, 4021
BstNI CCWGG 5 cut(s) 241, 270, 449, 2247, 3300
BstNSI RCATGY 3 cut(s) 1503, 2925, 2950
BstPAI GACNNNNGTC 2 cut(s) 916, 1914
BstSCI CCNGG 7 cut(s) 239, 268, 328, 329, 447, 2245, 3298
BstSFI CTRYAG 3 cut(s) 1172, 1662, 2312
BstSLI GKGCMC 1 cut(s) 3322
BstSNI TACGTA 3 cut(s) 47, 1028, 2630
BstUI CGCG 2 cut(s) 1064, 3365
BstV2I GAAGAC 1 cut(s) 2924
BstX2I RGATCY 1 cut(s) 121
BstXI CCANNNNNNTGG 1 cut(s) 1445
BstYI RGATCY 1 cut(s) 121
BstZ17I GTATAC 1 cut(s) 2955
Bsu36I CCTNAGG 2 cut(s) 2124, 2421
BtgI CCRYGG 3 cut(s) 996, 3063, 3517
BtgZI GCGATG 1 cut(s) 2742
BtsI GCAGTG 2 cut(s) 345, 1815
BtsIMutI CAGTG 5 cut(s) 254, 345, 888, 1815, 2192
BveI ACCTGC 2 cut(s) 1190, 1279
Cac8I GCNNGC 8 cut(s) 33, 138, 510, 1095, 1963, 2555, 2714, 3983
CaiI CAGNNNCTG 2 cut(s) 1731, 3473
CciI TCATGA 1 cut(s) 2254
CfoI GCGC 7 cut(s) 959, 1066, 1676, 1815, 1972, 2772, 3365
Cfr13I GGNCC 9 cut(s) 116, 487, 511, 626, 1826, 1959, 2161, 2213, 3156
Cfr9I CCCGGG 1 cut(s) 329
CseI GACGC 1 cut(s) 3465
DpnI GATC 3 cut(s) 123, 1525, 3567
DpnII GATC 3 cut(s) 121, 1523, 3565
DraI TTTAAA 2 cut(s) 1264, 1708
EaeI YGGCCR 2 cut(s) 2010, 3272
Eam1104I CTCTTC 5 cut(s) 312, 405, 2613, 2760, 2856
EarI CTCTTC 5 cut(s) 312, 405, 2613, 2760, 2856
Eco105I TACGTA 3 cut(s) 47, 1028, 2630
Eco130I CCWWGG 4 cut(s) 556, 996, 2607, 3063
Eco24I GRGCYC 2 cut(s) 2420, 3611
Eco31I GGTCTC 1 cut(s) 2282
Eco32I GATATC 2 cut(s) 1281, 2830
Eco47I GGWCC 6 cut(s) 116, 487, 626, 1826, 2161, 3156
Eco47III AGCGCT 2 cut(s) 958, 2771
Eco57I CTGAAG 4 cut(s) 194, 2957, 3414, 4016
Eco81I CCTNAGG 2 cut(s) 2124, 2421
Eco88I CYCGRG 2 cut(s) 329, 2961
EcoO109I RGGNCCY 1 cut(s) 487
EcoRI GAATTC 1 cut(s) 4031
EcoRII CCWGG 5 cut(s) 239, 268, 447, 2245, 3298
EcoRV GATATC 2 cut(s) 1281, 2830
EcoT14I CCWWGG 4 cut(s) 556, 996, 2607, 3063
EcoT22I ATGCAT 3 cut(s) 1214, 2077, 2468
EcoT38I GRGCYC 2 cut(s) 2420, 3611
ErhI CCWWGG 4 cut(s) 556, 996, 2607, 3063
FalI AAGNNNNNCTT 6 cut(s) 624, 656, 2367, 2399, 3199, 3231
FaqI GGGAC 5 cut(s) 222, 705, 1531, 1555, 3142
FauI CCCGC 1 cut(s) 2907
FauNDI CATATG 3 cut(s) 838, 2071, 2761
FblI GTMKAC 4 cut(s) 849, 1178, 2785, 2954
FriOI GRGCYC 2 cut(s) 2420, 3611
FspBI CTAG 7 cut(s) 125, 213, 1122, 1782, 1919, 2079, 3509
GlaI GCGC 7 cut(s) 958, 1065, 1675, 1814, 1971, 2771, 3364
GsaI CCCAGC 1 cut(s) 3794
GsuI CTGGAG 2 cut(s) 3185, 3582
HaeII RGCGCY 2 cut(s) 960, 2773
HapII CCGG 1 cut(s) 330
HgaI GACGC 1 cut(s) 3465
HhaI GCGC 7 cut(s) 959, 1066, 1676, 1815, 1972, 2772, 3365
Hin6I GCGC 7 cut(s) 957, 1064, 1674, 1813, 1970, 2770, 3363
HinP1I GCGC 7 cut(s) 957, 1064, 1674, 1813, 1970, 2770, 3363
HincII GTYRAC 4 cut(s) 705, 1179, 1366, 1578
HindII GTYRAC 4 cut(s) 705, 1179, 1366, 1578
HindIII AAGCTT 3 cut(s) 1236, 3131, 3900
HpaII CCGG 1 cut(s) 330
HphI GGTGA 5 cut(s) 119, 203, 1160, 1211, 3908
HpyCH4III ACNGT 9 cut(s) 726, 1176, 1802, 2482, 2723, 3242, 3346, 3431, 3518
HpyCH4IV ACGT 4 cut(s) 46, 1027, 2629, 3452
HpyF10VI GCNNNNNNNGC 9 cut(s) 344, 1967, 2363, 2563, 2776, 3482, 3665, 3987, 4021
HpySE526I ACGT 4 cut(s) 46, 1027, 2629, 3452
HspAI GCGC 7 cut(s) 957, 1064, 1674, 1813, 1970, 2770, 3363
Kzo9I GATC 3 cut(s) 121, 1523, 3565
LguI GCTCTTC 2 cut(s) 2760, 2856
LmnI GCTCC 5 cut(s) 544, 1190, 1840, 3088, 3523
MaeI CTAG 7 cut(s) 125, 213, 1122, 1782, 1919, 2079, 3509
MaeII ACGT 4 cut(s) 46, 1027, 2629, 3452
MaeIII GTNAC 8 cut(s) 867, 1003, 1390, 1398, 1531, 2203, 2686, 3366
MalI GATC 3 cut(s) 123, 1525, 3567
MboI GATC 3 cut(s) 121, 1523, 3565
MfeI CAATTG 2 cut(s) 1011, 2600
MflI RGATCY 1 cut(s) 121
MhlI GDGCHC 6 cut(s) 607, 890, 2420, 3322, 3611, 3759
MlsI TGGCCA 1 cut(s) 2012
MluNI TGGCCA 1 cut(s) 2012
MlyI GAGTC 5 cut(s) 647, 761, 926, 1553, 2683
MmeI TCCRAC 6 cut(s) 479, 546, 3224, 3385, 3435, 3615
Mox20I TGGCCA 1 cut(s) 2012
Mph1103I ATGCAT 3 cut(s) 1214, 2077, 2468
MroXI GAANNNNTTC 1 cut(s) 4031
MscI TGGCCA 1 cut(s) 2012
Msp20I TGGCCA 1 cut(s) 2012
MspCI CTTAAG 2 cut(s) 2384, 2450
MspI CCGG 1 cut(s) 330
MspR9I CCNGG 7 cut(s) 241, 270, 330, 331, 449, 2247, 3300
MunI CAATTG 2 cut(s) 1011, 2600
Mva1269I GAATGC 3 cut(s) 1214, 1649, 2468
MvaI CCWGG 5 cut(s) 241, 270, 449, 2247, 3300
MvnI CGCG 2 cut(s) 1064, 3365
MwoI GCNNNNNNNGC 9 cut(s) 344, 1967, 2363, 2563, 2776, 3482, 3665, 3987, 4021
NciI CCSGG 2 cut(s) 330, 331
NcoI CCATGG 2 cut(s) 996, 3063
NdeI CATATG 3 cut(s) 838, 2071, 2761
NdeII GATC 3 cut(s) 121, 1523, 3565
NlaIV GGNNCC 7 cut(s) 245, 474, 628, 2215, 3126, 3158, 4014
NmuCI GTSAC 4 cut(s) 1003, 1398, 1531, 2686
NsiI ATGCAT 3 cut(s) 1214, 2077, 2468
NspI RCATGY 3 cut(s) 1503, 2925, 2950
NspV TTCGAA 1 cut(s) 2018
PagI TCATGA 1 cut(s) 2254
PciI ACATGT 1 cut(s) 1499
PciSI GCTCTTC 2 cut(s) 2760, 2856
PcsI WCGNNNNNNNCGW 3 cut(s) 1033, 1458, 2639
PctI GAATGC 3 cut(s) 1214, 1649, 2468
PdmI GAANNNNTTC 1 cut(s) 4031
PfeI GAWTC 9 cut(s) 590, 2144, 2444, 2665, 2903, 2966, 2972, 3194, 3389
Pfl23II CGTACG 1 cut(s) 2630
PflMI CCANNNNNTGG 1 cut(s) 371
PfoI TCCNGGA 1 cut(s) 447
PleI GAGTC 5 cut(s) 647, 761, 925, 1552, 2683
PpsI GAGTC 5 cut(s) 647, 761, 925, 1552, 2683
Ppu21I YACGTR 3 cut(s) 47, 1028, 2630
PpuMI RGGWCCY 1 cut(s) 487
PscI ACATGT 1 cut(s) 1499
PshAI GACNNNNGTC 2 cut(s) 916, 1914
PshBI ATTAAT 2 cut(s) 410, 1994
PsiI TTATAA 2 cut(s) 1721, 2885
Psp5II RGGWCCY 1 cut(s) 487
Psp6I CCWGG 5 cut(s) 239, 268, 447, 2245, 3298
PspFI CCCAGC 1 cut(s) 3790
PspGI CCWGG 5 cut(s) 239, 268, 447, 2245, 3298
PspLI CGTACG 1 cut(s) 2630
PspN4I GGNNCC 7 cut(s) 245, 474, 628, 2215, 3126, 3158, 4014
PspPI GGNCC 9 cut(s) 116, 487, 511, 626, 1826, 1959, 2161, 2213, 3156
PspPPI RGGWCCY 1 cut(s) 487
PstNI CAGNNNCTG 2 cut(s) 1731, 3473
PsuI RGATCY 1 cut(s) 121
SalI GTCGAC 1 cut(s) 1177
SapI GCTCTTC 2 cut(s) 2760, 2856
Sau3AI GATC 3 cut(s) 121, 1523, 3565
Sau96I GGNCC 9 cut(s) 116, 487, 511, 626, 1826, 1959, 2161, 2213, 3156
SchI GAGTC 5 cut(s) 647, 761, 926, 1553, 2683
ScrFI CCNGG 7 cut(s) 241, 270, 330, 331, 449, 2247, 3300
SduI GDGCHC 6 cut(s) 607, 890, 2420, 3322, 3611, 3759
SfcI CTRYAG 3 cut(s) 1172, 1662, 2312
SfuI TTCGAA 1 cut(s) 2018
SinI GGWCC 6 cut(s) 116, 487, 626, 1826, 2161, 3156
SmaI CCCGGG 1 cut(s) 331
SmlI CTYRAG 6 cut(s) 883, 914, 2083, 2384, 2450, 2810
SmoI CTYRAG 6 cut(s) 883, 914, 2083, 2384, 2450, 2810
SnaBI TACGTA 3 cut(s) 47, 1028, 2630
SsiI CCGC 5 cut(s) 35, 1062, 2914, 3275, 3726
SspI AATATT 1 cut(s) 2801
SspMI CTAG 7 cut(s) 125, 213, 1122, 1782, 1919, 2079, 3509
StyD4I CCNGG 7 cut(s) 239, 268, 328, 329, 447, 2245, 3298
StyI CCWWGG 4 cut(s) 556, 996, 2607, 3063
TaaI ACNGT 9 cut(s) 726, 1176, 1802, 2482, 2723, 3242, 3346, 3431, 3518
TaiI ACGT 4 cut(s) 49, 1030, 2632, 3455
TaqI TCGA 8 cut(s) 406, 971, 1178, 1317, 2018, 2147, 2642, 2875
TaqII GACCGA 3 cut(s) 1157, 2507, 3569
TatI WGTACW 6 cut(s) 55, 1243, 2482, 2868, 3810, 3957
TauI GCSGC 2 cut(s) 3277, 3729
TfiI GAWTC 9 cut(s) 590, 2144, 2444, 2665, 2903, 2966, 2972, 3194, 3389
TscAI CASTG 5 cut(s) 254, 345, 895, 1815, 2192
TseFI GTSAC 4 cut(s) 1003, 1398, 1531, 2686
Tsp45I GTSAC 4 cut(s) 1003, 1398, 1531, 2686
TspGWI ACGGA 2 cut(s) 442, 2291
TspMI CCCGGG 1 cut(s) 329
TspRI CASTG 5 cut(s) 254, 345, 895, 1815, 2192
Van91I CCANNNNNTGG 1 cut(s) 371
Vha464I CTTAAG 2 cut(s) 2384, 2450
VneI GTGCAC 1 cut(s) 3318
VpaK11BI GGWCC 6 cut(s) 116, 487, 626, 1826, 2161, 3156
VspI ATTAAT 2 cut(s) 410, 1994
XbaI TCTAGA 2 cut(s) 212, 1918
XceI RCATGY 3 cut(s) 1503, 2925, 2950
XmaI CCCGGG 1 cut(s) 329
XmiI GTMKAC 4 cut(s) 849, 1178, 2785, 2954
XmnI GAANNNNTTC 1 cut(s) 4031
XspI CTAG 7 cut(s) 125, 213, 1122, 1782, 1919, 2079, 3509
Zsp2I ATGCAT 3 cut(s) 1214, 2077, 2468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.