Rorug04G0127100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000582
Physical Location & Seq
Forward (+)
20176471 .. 20177957
1487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0127100.1

Sequence Viewer

Length: 420 bp
ATGCTGCTACTGGAACAATCCAAGCCTGAGTTGGCCTCATCAGGTCTGGGAAGTGGGCTTCTCTGGGACTTTGGGAACGGTGGATCTGAGACTGATTTGGGTAAAGGCTGTAACTTGAAAAGAATCCTCAGGCATCCTATTGAAGCGATTCTGAGGCTGTTTCCTGGACCACATTCAAAAACAAAGAGAGGTTTATTCTCAAGCAATGCATCATTTGACACTTTGCAGGAGGCGGTGACCAATGTAGACAAGGTAGCTGATGGGAGGCGCTTGCTTGTGCTCGTCGTCTTCATCGGAGGTGTAACATTCGTCGTCTTCAGAAATGCCTTTCAATTTCTCAATTCTCAGTTTAATCCATTGTTGCAAGGCTACAAGCTGCTCTTGGTAGTTGCCCTGGGAGAGATCCACAAGTGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3883

Protein Analysis

139

Amino Acids

15.21

Weight (kDa)

9.51

Isoelectric Point (pI)

42.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08300 AT1G08300 AT1G08300 AT4G13750
fragaria_vesca FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_4g13620 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660
malus_domestica MD04G1012800.v1.1 MD04G1012900.v1.1 MD04G1013100.v1.1 MD04G1013300.v1.1
prunus_persica Prupe.1G159000_v2.0.a1 Prupe.1G159100_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G358100_v2.0.a1
pyrus_communis pycom04g01020 pycom04g01030
rosa_chinensis RchiOBHm_Chr4g0414341 RchiOBHm_Chr4g0414351 RchiOBHm_Chr6g0275261 RchiOBHm_Chr7g0213881 RchiOBHm_Chr7g0213891
rosa_laevigata RLG00000008153 RLG00000008155 RLG00000013477
rosa_multiflora Rmu_co8510163.1_g000001 Rmu_sc0004087.1_g000027 Rmu_sc0005196.1_g000014 Rmu_sc0005558.1_g000005 Rmu_sc0005558.1_g000006 Rmu_sc0008100.1_g000005 Rmu_sc0008560.1_g000005
rosa_roxburghii Rroxscaffold_5G00358210 Rroxscaffold_5G00358220 Rroxscaffold_7G00187920 Rroxscaffold_7G00187930 Rroxscaffold_7G00193450
rosa_rugosa Rorug04G0127100 Rorug04G0127200 Rorug04G0127300 Rorug04G0127400 Rorug06G0090600
rosa_samantha Rh4AG185200 Rh4AG185300 Rh4AG185500 Rh4BG184700 Rh4BG184800 Rh4CG198000 Rh4CG198100 Rh4DG182400 Rh4DG182600 Rh6AG204100 Rh6BG207000 Rh6CG209600 Rh6DG200000 Rh7AG277400 Rh7CG296400 Rh7CG296500
rosa_wichuraiana Rw4G015850 Rw4G015860 Rw6G017730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 246
AciI CCGC 1 cut(s) 233
AclWI GGATC 2 cut(s) 91, 397
AcuI CTGAAG 1 cut(s) 301
AgsI TTSAA 4 cut(s) 118, 143, 177, 332
AjnI CCWGG 2 cut(s) 163, 393
AluBI AGCT 2 cut(s) 257, 376
AluI AGCT 2 cut(s) 257, 376
Alw21I GWGCWC 1 cut(s) 282
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 2 cut(s) 91, 397
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 2 cut(s) 4, 376
Asp700I GAANNNNTTC 1 cut(s) 147
AspLEI GCGC 1 cut(s) 270
AspS9I GGNCC 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 247
AvaII GGWCC 1 cut(s) 167
AxyI CCTNAGG 1 cut(s) 128
BbsI GAAGAC 2 cut(s) 280, 307
Bbv12I GWGCWC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 363
BccI CCATC 1 cut(s) 254
BciT130I CCWGG 2 cut(s) 165, 395
BcoDI GTCTC 1 cut(s) 83
BfoI RGCGCY 1 cut(s) 271
BisI GCNGC 2 cut(s) 5, 377
BlsI GCNGC 2 cut(s) 6, 378
Bme1390I CCNGG 2 cut(s) 165, 395
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 167
BmrFI CCNGG 2 cut(s) 165, 395
BmsI GCATC 2 cut(s) 142, 218
BpiI GAAGAC 2 cut(s) 280, 307
BplI GAGNNNNNCTC 2 cut(s) 20, 52
BpuEI CTTGAG 1 cut(s) 184
BsaJI CCNNGG 2 cut(s) 393, 394
Bse1I ACTGG 1 cut(s) 15
Bse21I CCTNAGG 1 cut(s) 128
Bse3DI GCAATG 1 cut(s) 211
BseBI CCWGG 2 cut(s) 165, 395
BseDI CCNNGG 2 cut(s) 393, 394
BseGI GGATG 1 cut(s) 133
BseMI GCAATG 1 cut(s) 211
BseMII CTCAG 5 cut(s) 18, 78, 142, 143, 359
BseNI ACTGG 1 cut(s) 15
BseXI GCAGC 1 cut(s) 363
BshFI GGCC 1 cut(s) 35
BsiHKAI GWGCWC 1 cut(s) 282
BslFI GGGAC 1 cut(s) 80
BsmAI GTCTC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 2 cut(s) 83, 402
BspACI CCGC 1 cut(s) 233
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 5 cut(s) 19, 79, 141, 144, 358
BspPI GGATC 2 cut(s) 91, 397
BsrDI GCAATG 1 cut(s) 211
BsrI ACTGG 1 cut(s) 15
BssECI CCNNGG 2 cut(s) 393, 394
BssMI GATC 2 cut(s) 83, 402
Bst2UI CCWGG 2 cut(s) 165, 395
Bst4CI ACNGT 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 272
BstDEI CTNAG 5 cut(s) 27, 87, 128, 152, 345
BstEII GGTNACC 1 cut(s) 235
BstF5I GGATG 1 cut(s) 133
BstH2I RGCGCY 1 cut(s) 271
BstHHI GCGC 1 cut(s) 270
BstKTI GATC 2 cut(s) 86, 405
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 2 cut(s) 83, 402
BstNI CCWGG 2 cut(s) 165, 395
BstPI GGTNACC 1 cut(s) 235
BstSCI CCNGG 2 cut(s) 163, 393
BstV1I GCAGC 1 cut(s) 363
BstV2I GAAGAC 2 cut(s) 280, 307
BstX2I RGATCY 2 cut(s) 83, 402
BstYI RGATCY 2 cut(s) 83, 402
Bsu36I CCTNAGG 1 cut(s) 128
BsuRI GGCC 1 cut(s) 35
BtsCI GGATG 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 272
CfoI GCGC 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 167
CviJI RGCY 8 cut(s) 25, 35, 58, 108, 157, 257, 369, 376
CviKI_1 RGCY 8 cut(s) 25, 35, 58, 108, 157, 257, 369, 376
DdeI CTNAG 5 cut(s) 27, 87, 128, 152, 345
DpnI GATC 2 cut(s) 85, 404
DpnII GATC 2 cut(s) 83, 402
Eco47I GGWCC 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 301
Eco81I CCTNAGG 1 cut(s) 128
Eco91I GGTNACC 1 cut(s) 235
EcoO65I GGTNACC 1 cut(s) 235
EcoRII CCWGG 2 cut(s) 163, 393
EcoT22I ATGCAT 1 cut(s) 211
FalI AAGNNNNNCTT 2 cut(s) 365, 397
FaqI GGGAC 1 cut(s) 80
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 2 cut(s) 5, 377
FokI GGATG 1 cut(s) 120
Fsp4HI GCNGC 2 cut(s) 5, 377
GlaI GCGC 1 cut(s) 269
GluI GCNGC 2 cut(s) 5, 377
HaeII RGCGCY 1 cut(s) 271
HaeIII GGCC 1 cut(s) 35
HhaI GCGC 1 cut(s) 270
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HinfI GANTC 2 cut(s) 123, 148
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 4 cut(s) 88, 153, 296, 320
Hpy8I GTNNAC 1 cut(s) 247
Hpy99I CGWCG 2 cut(s) 287, 314
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4V TGCA 4 cut(s) 209, 226, 364, 414
HpyF3I CTNAG 5 cut(s) 27, 87, 128, 152, 345
HspAI GCGC 1 cut(s) 268
Kzo9I GATC 2 cut(s) 83, 402
Lsp1109I GCAGC 1 cut(s) 363
LweI GCATC 2 cut(s) 142, 218
MaeIII GTNAC 3 cut(s) 110, 235, 301
MalI GATC 2 cut(s) 85, 404
MboI GATC 2 cut(s) 83, 402
MboII GAAGA 2 cut(s) 280, 307
MflI RGATCY 2 cut(s) 83, 402
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 2 cut(s) 332, 340
MnlI CCTC 7 cut(s) 46, 137, 147, 182, 223, 258, 290
Mph1103I ATGCAT 1 cut(s) 211
MroXI GAANNNNTTC 1 cut(s) 147
MseI TTAA 1 cut(s) 351
MspR9I CCNGG 2 cut(s) 165, 395
MvaI CCWGG 2 cut(s) 165, 395
NdeII GATC 2 cut(s) 83, 402
NmuCI GTSAC 1 cut(s) 235
NsiI ATGCAT 1 cut(s) 211
PasI CCCWGGG 1 cut(s) 394
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 2 cut(s) 123, 148
PfoI TCCNGGA 1 cut(s) 163
PkrI GCNGC 2 cut(s) 6, 378
Psp6I CCWGG 2 cut(s) 163, 393
PspEI GGTNACC 1 cut(s) 235
PspGI CCWGG 2 cut(s) 163, 393
PspPI GGNCC 1 cut(s) 167
PsuI RGATCY 2 cut(s) 83, 402
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 2 cut(s) 5, 377
Sau3AI GATC 2 cut(s) 83, 402
Sau96I GGNCC 1 cut(s) 167
ScrFI CCNGG 2 cut(s) 165, 395
SduI GDGCHC 1 cut(s) 282
SetI ASST 6 cut(s) 46, 193, 255, 259, 301, 378
SfaNI GCATC 2 cut(s) 142, 218
SinI GGWCC 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 199
SmoI CTYRAG 1 cut(s) 199
Sse9I AATT 2 cut(s) 332, 340
SsiI CCGC 1 cut(s) 233
StyD4I CCNGG 2 cut(s) 163, 393
TaaI ACNGT 1 cut(s) 80
TasI AATT 2 cut(s) 332, 340
TfiI GAWTC 2 cut(s) 123, 148
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 2 cut(s) 4, 376
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 167
XcmI CCANNNNNNNNNTGG 1 cut(s) 28
XmiI GTMKAC 1 cut(s) 246
XmnI GAANNNNTTC 1 cut(s) 147
Zsp2I ATGCAT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.