MD04G1013300.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
1509926 .. 1521756
11831 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1013300.v1.1.491

Sequence Viewer

Length: 5754 bp
ATGTCCGGACGACGTTCTCGCCCCTCCTCCCGCAGCAGAAGGGGTCAGCCACCGCAACAACCCCAAAGCCTTAATTTCCCCCTCCAAAACTCCAGCAACCCTACCCAAAACCCTGGCTTCACTCCTCCTCAGGTTTCGAGCTCTGCGGTCTTTTGGCCTCAGAACTCGAGAGATATGCTCGAGAGTATTGACCGAGCCGTGGGGAAGGCTCGCTACGAGCTTGCCGCCGCCGGAGAGAACGTCTCCGCTTGGAAGGTCGTGCAGTCGACCCTTCTGATGCTCAAAGTTGATAGCTGGGATTCTTTGGGGTTTCAGATGCAGCAAGTGCCGTATCTGAACCTCCTCATGCTCACCGAAGCGAAGATAAATGCATTTATCCATTGTTTCGTTGGAGTTCAAAGCATTACTTCATTGTATGATTTGGAAGTAGCAATCTGCAAGAATGAGAGAATTAAGCAGTTTGAAAAGCTGGGATTGGGCCCTTTGTTGCGACACCCACTTGTTTTGCATTATTTCTCGGTGAAGTCTGCTACAACTAAAGTGTTTAAGATAACTAGTGAGGAGATAACATCTCTACTTTCAGAGTTCATGGATACTTCTAACAATAAAATGTTTAGCCCTGAAGAAATTTTAGATTTCATCGTTAAGAGGCGATCTGCTGCAAGCAAGGAAGATCTTGGAATACGAATTTACAATCTGGGGAATTATATTTTTGCCATTCAGAAAGCCAAGAGATTAGAAATGAAATCTGTGAAGGGATTTGAGGAAGAAATAGTTACAGAATGTAGGCAGAGTCCACTTTTTTCCGCACTGAAAAATCAGCTAGATGAACGTTTCAGCACCATTTCTCAGCATGTTGAATCGTTTTCCTCCATGCACAAGGATTTTCGTGGCAAGCACATTAGATTTGATTCCTCAAGCTTAAAGGATGAAGATAATGAGAGTAAGGGAGAGAAGGTTCAAGATGCCCTTCCTGTGGAAAATGGTAGGGAAACCAATGAGGTCAGCAATTTGCATGAAGATAAACTTTCAATTGACAATAACCGTATGAAGATTTTTATTACAACCTGGAAGGAGGCATGTCAGGAGCTCACTGTGACTGAGGTAGTTGATATGATGCTGCTGTATAATAATACCACAGCTAAGCGGAGAAAGAAAATCAAGTCAATGTTTTCCCTTCATCCATTAATTGGATTACTTAACGTTGCTGTCTCGTCTATCAAATGTGGAATGTGGGACAGCATGTATGATACATTCCAAACTGTCAGTCTTACTGATAACTGTCCTGAATATGTGAGCATAGATGAACCAATTACTAAAGATGAACCAAAAATTAAGGATCCACCGGTCGTCACTGAACATACTGTTGAGCATACGCAGAGTGTTTCTGTTGAGGACATAATCAGAAGTATTACCCTGTATTTTGAGAGTGATCAAGGAAGGCATTACAATAGCCAATCACTTCAGGAGAAGATATTTATCTTCTTGAGAAAGCTTTGCGATTGCGAGCTTTGGCTGGTCAAAGAATTTGGCCTCAAGGAATTTACATCCCTCGGTCATGGGGAGTTTTTTATCTTCTTAGAGAAATATGCTTGTCTACTGCCAGACGAGCTGTGCAAGTTCCCGACTGGTGACGTAACGGTAAAGTGTCCTTTGGAGGTTTGCTTGCTCCAGCACCATTTGGTTGTTTTAGTATCTCAAGCTTTGAATAGTTTATGGGAGGATGAAAACATTACTAAAGAAAAAATATTACTGCTGCTTAGGAAGCAGTTCCCATTGGTTAGTTTCACAACTACTGAAAATGGTTCAGCGGAAGATTTCTTAAGTATAGTGGGAAAGCATAAAAATGCTGCGATTTCCAAATGTGTTCTATTTTCAATGGCACTATGTGGAACTAGTTATGCTAGACAGTCATCAGCACAGATTGAGAATGTCCTATGGAACAGCACTTTAATCGATACTGACAGTGGCCCGAAAGCAAAGCCTTATGAATCTGTTACATCCAAGGTTGCAATTGAAGTCTTACTTAGGGCACCAATGATGTCAGATTTAAACTTATGGTCACATTGGGACCTTTTGTTTGCTCCCTCTCTTGGTCCTCTTTTACCATGGCTGTTGAAGGAAGTCAACACGGATGAACTGTTGTGTTTGGTGACAAAAGATGGAAAACTGATTCGGTTAGATCATTCAGCAACTGTTGATTCATTCTTGGAAGCTGCACTTCAAGGATCCTCTTTTCAAACAGCAGTGAAAATGCTATCTCTATTTTCACTAGTTGGGGGAGAAAAACATGTTCCTGTCTCCCTTCTGAAAATTCATATACAACATGCATTTGAAGTAATCCTGAAGAATTATTTAGATGGTTTGGAAGTACATGACAATAATAATTCTTTTAATTATGGAGAACCACTGTCTAGACAGGAAATTGTTGGTGAAGTTGCTGCTGGTAAATTGTGTAGTAAATTACACAGTGACATAGGCAAGATGAATGGTGCAACGTCTGTTATATCAAGATTTGTCCTTGAATGTCTTGGGTATCTACCTGCCGAGTTTCGTGATTTTGCTGCTGATATATTGCTTTCTGGGATACAATCTGTTGTCAAACATGCTCCCTCAGCCATTCTGGGTGAATGTATCAAACCAGAACAGCGTCTCATGCTTCACGAAGTTGGGTTGTCTCTTGGTATAGTGGAGTGGATTACTGATTACCATGAATTTTGTTCCAAGGATGCTACTGACTTGTTCATATCTGCGGATTCACTTATGAATTCTGTTAGTTATGGAACAGGGTCAAGCTCAATGATTGTGCAAGATGTGTCAGATGAGTTTTCTGCTTCTGAACAGAGCATGGGTGCATCTGGTAGGCCAGATGAGCAGACAACTGGATGTACTGGTTGTCTGAAGATTGATAGTGCAGAAGCTCCTGATGCTAGAAATGGATATTGTTCCACACAAGGTTCTGCGGAGCTTAATAAGCATGAAGATGCAGCCCAGGTAATTGAGTCAATCCGGAGAGATGAATTCGGTCTTGATTCAACCCTACAAGGTGTTGAAAGTATCATGCTAAAGAAGCAGCATGCTCGCTTAGGGAGAGCTCTTCATTGTCTTTCACAGGAATTGTATTCTCAGGATTCACACTTTCTTCTTGAGCTGGTTCAAAATGCTGATGATAATACCTACCCAACAAATGTAGAACCAACTCTAACATTCATTCTTCAAGAATCAGGTATTATTGTATTAAACAATGAGCAAGGATTCTCTTCCCAGAACATTACAGCACTTTGTGATGTTGGAAGTTCCACCAAGAAAGGATCTAATGCTGGATATATTGGGCAGAAGGGCATTGGTTTCAAATCAGTATTTCGGGTCACAGATGCTCCAGAAATTCATTCCAATGGGTTCCATATCAAGTTTGATATAAGTGAGGGTCAGATCGGGTTTGTTTTGCCAACAGTTGTACCTCCCTGCAATATTGACTTGTTTAGTAGGCTTACTTCTGGTGGCAATGATCAATCTGATCGTGACTACTGGAACACTTGCATTGTTCTTCCTTTCAAATCAAAATTATCAGATGCAACTGTCATGAAAAATATTATAAATATGTTTTCAGATCTTCATCCATCTTTATTACTCTTTCTGCACCGCCTCCAGTGTATCAAGTTCAGAAACTTGCTCGATGATTCACTTACTGTCATGAGAAAAGAAATTGTGGGAGATGGTATCGTTAAGGTTTCACTTGGGAAAGAAAAAATGACATGGTTTATAGTATCTCAAAAATTGCAAGCAGAATTTGTTCGTAGTGATGTACAAGAAACAGAGATCTCGATAGCATTGACTTTGAAGGAATCCAATAGTGGCGATTATAGTCCAGATTTACGCCAACACCCGGTTTTTGCATTTCTTCCTCTAAGAACTTATGGCCTGAAATTTATTCTGCAGGGTGATTTTGCCATTACTTCATCTAGAGAGGAAGTGGATGGAGATAGTCCCTGGAACCAGTGGCTATTGTCAGAATTTCCAGGTTTGTTTATCAATGCAGAGAGATCTTTTTGTGCTCTTCCATGTTATAGAGAGAATCCAGGCAGAGCTGTGGCAGCTTATATGTCCTTTGTTCCGCTTGTCGGGGAGGTGCATGGCTTCTTTTCTTCTCTTCCTCGATTGATTATTTCTAAATTACGTATGTCAAATTGCTTACTCCTAGAAGGAGGAAACAATGAATGGGTTCCTCCTTGCAAAGTTCTAAGAGGTTGGAATGAACGTGCTCATTCACTTCTTCCTGACAGTTTACTACATGAACATCTTGGCCTTGGGTTCTTGGATAGAAATATTGCGCTGTCAGACCAACTTGCAAGTGCACTAGGTATTGCGGAGTATGGACCCAAAGTTCTTCTTCAAGTTATGGTCTCTTTATGCCATAAACATAGTGATCTCAAATCAATGGGGTTTGGTTGGCTGGCCTTTTGGCTAAGTGAACTTTATGCAATGTTTTTCAGTTCATCCGTGGAAGCTTCATTTGACTCTAGAATTCAAATGGATGTCATAGAAGACCTTCGAAAAATTCCATTCATTCCTCTTTCAGATGGTACTTACGGTGCAATAGATGAAGGCCCAATTTGGTTACATTTTGATGCCTCATGCACTGAGCTTGAAGCTCAGCACGGACTTGAGTCCTTTCCACACTTATATGCAAAGCTTCGGACCGTAAATCCTGCCCTCCTTTCTACACTGTGTGCAGATATGTCATCCATGGATGTGACCACAGTTGAAAAACTCACATGTATACTTTTCCGAATTGGTGTCCAGAAGTTGTCTACACACGAAATTGTCAAAGTGCACATCCTGCCAGCTATGTCTGAAGATAGAATTATGGATAGGGATAAGAATTTGATGATTGAATATCTCTGCTTTGTTATGCTCCACCTACAGTCTAGCTGCTCCAATTGTCATGTTGAAAGGGAATATATAATCTCTGAAATACGGGATAAAGCTTACATATCAACAAATCATGGCTTTAAACGACCTTCTGAGGTATCAATTCATTTCAGTCAAGAATTTGGTAATCCCGTCGACATAATGAAGTTGATTAATATGGCGGATATGAAGTGGCATGAGGTTGACATCTCCTATTTGAGACATCCTGTCACAAAGTCACTCCCATGTGAACTGGAGAAGTGGAGGCAATTTTTCCAGCAAATTGGGATAACGGATTTCGTCAAAGTAGTTCAAGTTGTGAAGGGAACAGCTGATATTTCAGATGGACTAGTTAAGAATTTGATATGGGATAAGGACTTAATTTCCCTTAGGTCAAATATCAGAGATTGGGAATCCCCTGAATTGGTCGACTTATTGTCACTATTGGCCAGAGATGGCAACAAAAGAGGTTGTGAATATCTTTTAGAGGTTCTTGATACTTTGTGGGATGATTGTTATAGTGAAAAAACTACAGGTTATTGTGCTTCTAACTCTGAAGCCAACAGAAGGCCCTTCAAATCTTCATTTATAAGTAGCATCTGCGATGTGCAGTGGGTAGCATCAGCGATGGATGATGTGCTTCACTATCCTAAACATTTATATCATGACTGTGATGCAGTGCGTTCGACTCTGGGGGCATCTGCTCCTTTTGCGATTCCAAAGGTTAGTTTGGTACCTGCATACCGAATTCCCCATTTTTTTACTTCAAAGGGACCTTTTTTATTTGTTTTCTACATGTTTTTTTTTTTTCTGCATACTAAATTACTTTCTGATTTTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1918

Amino Acids

215.64

Weight (kDa)

5.6

Isoelectric Point (pI)

45.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SACS PF25794 1041 - 1136 1.5e-08 Sacsin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08300 AT1G08300 AT1G08300 AT4G13750
fragaria_vesca FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_4g13620 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660
malus_domestica MD04G1012800.v1.1 MD04G1012900.v1.1 MD04G1013100.v1.1 MD04G1013300.v1.1
prunus_persica Prupe.1G159000_v2.0.a1 Prupe.1G159100_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G358100_v2.0.a1
pyrus_communis pycom04g01020 pycom04g01030
rosa_chinensis RchiOBHm_Chr4g0414341 RchiOBHm_Chr4g0414351 RchiOBHm_Chr6g0275261 RchiOBHm_Chr7g0213881 RchiOBHm_Chr7g0213891
rosa_laevigata RLG00000008153 RLG00000008155 RLG00000013477
rosa_multiflora Rmu_co8510163.1_g000001 Rmu_sc0004087.1_g000027 Rmu_sc0005196.1_g000014 Rmu_sc0005558.1_g000005 Rmu_sc0005558.1_g000006 Rmu_sc0008100.1_g000005 Rmu_sc0008560.1_g000005
rosa_roxburghii Rroxscaffold_5G00358210 Rroxscaffold_5G00358220 Rroxscaffold_7G00187920 Rroxscaffold_7G00187930 Rroxscaffold_7G00193450
rosa_rugosa Rorug04G0127100 Rorug04G0127200 Rorug04G0127300 Rorug04G0127400 Rorug06G0090600
rosa_samantha Rh4AG185200 Rh4AG185300 Rh4AG185500 Rh4BG184700 Rh4BG184800 Rh4CG198000 Rh4CG198100 Rh4DG182400 Rh4DG182600 Rh6AG204100 Rh6BG207000 Rh6CG209600 Rh6DG200000 Rh7AG277400 Rh7CG296400 Rh7CG296500
rosa_wichuraiana Rw4G015850 Rw4G015860 Rw6G017730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 3596, 5501
Acc36I ACCTGC 2 cut(s) 2551, 5656
Acc65I GGTACC 1 cut(s) 5644
AccB1I GGYRCC 2 cut(s) 2032, 5644
AccB7I CCANNNNNTGG 1 cut(s) 1190
AccI GTMKAC 6 cut(s) 266, 1597, 4780, 4811, 5067, 5340
AccIII TCCGGA 2 cut(s) 5, 3009
AclI AACGTT 2 cut(s) 832, 1203
AclWI GGATC 5 cut(s) 1334, 1347, 2223, 2236, 3319
AcoI YGGCCR 1 cut(s) 5358
AcuI CTGAAG 6 cut(s) 642, 1448, 2366, 2921, 4875, 5487
AdeI CACNNNGTG 3 cut(s) 1889, 3284, 4730
AfaI GTAC 6 cut(s) 2373, 2890, 3459, 3807, 4585, 5646
AfiI CCNNNNNNNGG 8 cut(s) 199, 976, 1190, 2093, 3886, 4121, 5335, 5478
AflII CTTAAG 1 cut(s) 1822
AflIII ACRYGT 3 cut(s) 2290, 4775, 5706
AgeI ACCGGT 1 cut(s) 1345
AhdI GACNNNNNGTC 2 cut(s) 5138, 5347
AhlI ACTAGT 4 cut(s) 554, 1895, 2272, 5260
AjnI CCWGG 6 cut(s) 112, 1067, 2991, 3989, 4018, 4078
AloI GAACNNNNNNTCC 4 cut(s) 942, 974, 4368, 4400
Alw21I GWGCWC 7 cut(s) 143, 1092, 3097, 4057, 4264, 4357, 4836
Alw26I GTCTC 7 cut(s) 247, 1216, 2305, 2657, 2682, 4408, 5125
Alw44I GTGCAC 2 cut(s) 4353, 4832
AlwI GGATC 5 cut(s) 1334, 1347, 2223, 2236, 3319
AlwNI CAGNNNCTG 1 cut(s) 2195
Ama87I CYCGRG 2 cut(s) 166, 179
Aor13HI TCCGGA 2 cut(s) 5, 3009
ApaI GGGCCC 1 cut(s) 482
ApaLI GTGCAC 2 cut(s) 4353, 4832
ArsI GACNNNNNNTTYG 4 cut(s) 1252, 1284, 2063, 2095
AseI ATTAAT 2 cut(s) 1187, 5085
AsiGI ACCGGT 1 cut(s) 1345
Asp700I GAANNNNTTC 4 cut(s) 1769, 3792, 4221, 4548
Asp718I GGTACC 1 cut(s) 5644
AspLEI GCGC 1 cut(s) 4333
AsuC2I CCSGG 1 cut(s) 3887
AsuHPI GGTGA 7 cut(s) 343, 532, 1643, 2164, 2444, 2639, 3953
AsuII TTCGAA 1 cut(s) 4552
AvaI CYCGRG 2 cut(s) 166, 179
AvaII GGWCC 5 cut(s) 2071, 2096, 4376, 4698, 5684
AxyI CCTNAGG 2 cut(s) 129, 5300
BaeGI GKGCMC 4 cut(s) 482, 2035, 4357, 4836
BaeI ACNNNNGTAYC 2 cut(s) 3441, 3474
BalI TGGCCA 1 cut(s) 5360
BamHI GGATCC 2 cut(s) 1339, 2228
BanI GGYRCC 2 cut(s) 2032, 5644
BanII GRGCYC 4 cut(s) 143, 482, 1092, 3097
BarI GAAGNNNNNNTAC 4 cut(s) 197, 229, 3478, 3510
BbsI GAAGAC 1 cut(s) 4551
Bbv12I GWGCWC 7 cut(s) 143, 1092, 3097, 4057, 4264, 4357, 4836
BbvCI CCTCAGC 1 cut(s) 2614
BccI CCATC 9 cut(s) 2156, 2354, 3628, 3710, 3971, 4574, 5249, 5360, 5533
BceAI ACGGC 2 cut(s) 182, 313
BcgI CGANNNNNNTGC 8 cut(s) 157, 191, 1936, 1970, 3062, 3096, 5577, 5611
BciT130I CCWGG 6 cut(s) 114, 1069, 2993, 3991, 4020, 4080
BciVI GTATCC 2 cut(s) 586, 2580
BclI TGATCA 2 cut(s) 1432, 3508
BcnI CCSGG 1 cut(s) 3887
BcoDI GTCTC 7 cut(s) 247, 1216, 2305, 2657, 2682, 4408, 5125
BcuI ACTAGT 4 cut(s) 554, 1895, 2272, 5260
BfmI CTRYAG 3 cut(s) 3935, 4922, 5442
BfrI CTTAAG 1 cut(s) 1822
BfuAI ACCTGC 2 cut(s) 2551, 5656
BfuI GTATCC 2 cut(s) 586, 2580
BglII AGATCT 4 cut(s) 673, 3610, 3819, 4043
BlpI GCTNAGC 2 cut(s) 1143, 4653
Bme1390I CCNGG 7 cut(s) 114, 1069, 2993, 3887, 3991, 4020, 4080
Bme18I GGWCC 5 cut(s) 2071, 2096, 4376, 4698, 5684
BmeRI GACNNNNNGTC 2 cut(s) 5138, 5347
BmeT110I CYCGRG 2 cut(s) 166, 179
BmrFI CCNGG 7 cut(s) 114, 1069, 2993, 3887, 3991, 4020, 4080
BoxI GACNNNNGTC 1 cut(s) 4666
BpiI GAAGAC 1 cut(s) 4551
BplI GAGNNNNNCTC 4 cut(s) 162, 194, 227, 259
BpmI CTGGAG 5 cut(s) 76, 1655, 3363, 3632, 5186
Bpu10I CCTNAGC 3 cut(s) 1760, 2614, 3085
Bpu1102I GCTNAGC 2 cut(s) 1143, 4653
Bpu14I TTCGAA 1 cut(s) 4552
BpuEI CTTGAG 6 cut(s) 901, 1507, 1520, 1683, 3167, 4685
BpuMI CCSGG 1 cut(s) 3887
Bsa29I ATCGAT 1 cut(s) 1956
BsaAI YACGTR 1 cut(s) 4178
BsaBI GATNNNNATC 2 cut(s) 1478, 3615
BsaI GGTCTC 1 cut(s) 4408
BsaWI WCCGGW 3 cut(s) 5, 1345, 3009
BsaXI ACNNNNNCTCC 6 cut(s) 225, 255, 942, 972, 3361, 3391
Bsc4I CCNNNNNNNGG 8 cut(s) 199, 976, 1190, 2093, 3886, 4121, 5335, 5478
Bse118I RCCGGY 1 cut(s) 1345
Bse1I ACTGG 7 cut(s) 1633, 2887, 2896, 3533, 3649, 3997, 5169
Bse21I CCTNAGG 2 cut(s) 129, 5300
Bse3DI GCAATG 2 cut(s) 3511, 4488
Bse8I GATNNNNATC 2 cut(s) 1478, 3615
BseAI TCCGGA 2 cut(s) 5, 3009
BseBI CCWGG 6 cut(s) 114, 1069, 2993, 3991, 4020, 4080
BseCI ATCGAT 1 cut(s) 1956
BseJI GATNNNNATC 2 cut(s) 1478, 3615
BseLI CCNNNNNNNGG 8 cut(s) 199, 976, 1190, 2093, 3886, 4121, 5335, 5478
BseMI GCAATG 2 cut(s) 3511, 4488
BseMII CTCAG 9 cut(s) 143, 173, 863, 1092, 2628, 3140, 4632, 4667, 5016
BseNI ACTGG 7 cut(s) 1633, 2887, 2896, 3533, 3649, 3997, 5169
BseRI GAGGAG 5 cut(s) 16, 114, 117, 332, 575
BseSI GKGCMC 4 cut(s) 482, 2035, 4357, 4836
BseYI CCCAGC 2 cut(s) 294, 469
BsgI GTGCAG 6 cut(s) 281, 2202, 2934, 3623, 4752, 5540
Bsh1285I CGRYCG 1 cut(s) 1350
BshNI GGYRCC 2 cut(s) 2032, 5644
BshTI ACCGGT 1 cut(s) 1345
BshVI ATCGAT 1 cut(s) 1956
BsiEI CGRYCG 1 cut(s) 1350
BsiHKAI GWGCWC 7 cut(s) 143, 1092, 3097, 4057, 4264, 4357, 4836
BsiHKCI CYCGRG 2 cut(s) 166, 179
BsiSI CCGG 5 cut(s) 6, 231, 1346, 3010, 3887
BslFI GGGAC 4 cut(s) 1250, 2084, 3972, 5697
BslI CCNNNNNNNGG 8 cut(s) 199, 976, 1190, 2093, 3886, 4121, 5335, 5478
BsmAI GTCTC 7 cut(s) 247, 1216, 2305, 2657, 2682, 4408, 5125
BsmBI CGTCTC 2 cut(s) 247, 2657
BsmFI GGGAC 4 cut(s) 1250, 2084, 3972, 5697
Bso31I GGTCTC 1 cut(s) 4408
BsoBI CYCGRG 2 cut(s) 166, 179
Bsp119I TTCGAA 1 cut(s) 4552
Bsp120I GGGCCC 1 cut(s) 478
Bsp1286I GDGCHC 9 cut(s) 143, 482, 1092, 2035, 3097, 4057, 4264, 4357, 4836
Bsp13I TCCGGA 2 cut(s) 5, 3009
Bsp1407I TGTACA 1 cut(s) 3805
Bsp1720I GCTNAGC 2 cut(s) 1143, 4653
Bsp19I CCATGG 2 cut(s) 2108, 4746
BspCNI CTCAG 9 cut(s) 142, 172, 862, 1093, 2627, 3139, 4633, 4666, 5017
BspDI ATCGAT 1 cut(s) 1956
BspEI TCCGGA 2 cut(s) 5, 3009
BspHI TCATGA 3 cut(s) 3582, 3693, 5575
BspMAI CTGCAG 1 cut(s) 3939
BspMI ACCTGC 2 cut(s) 2551, 5656
BspPI GGATC 5 cut(s) 1334, 1347, 2223, 2236, 3319
BspQI GCTCTTC 2 cut(s) 3102, 4062
BspT104I TTCGAA 1 cut(s) 4552
BspT107I GGYRCC 2 cut(s) 2032, 5644
BspTI CTTAAG 1 cut(s) 1822
BspTNI GGTCTC 1 cut(s) 4408
BsrDI GCAATG 2 cut(s) 3511, 4488
BsrFI RCCGGY 1 cut(s) 1345
BsrGI TGTACA 1 cut(s) 3805
BsrI ACTGG 7 cut(s) 1633, 2887, 2896, 3533, 3649, 3997, 5169
BssAI RCCGGY 1 cut(s) 1345
BssNAI GTATAC 1 cut(s) 4781
BssT1I CCWWGG 5 cut(s) 2004, 2108, 2724, 4306, 4746
Bst1107I GTATAC 1 cut(s) 4781
Bst2UI CCWGG 6 cut(s) 114, 1069, 2993, 3991, 4020, 4080
Bst6I CTCTTC 4 cut(s) 3102, 3265, 4062, 4155
BstAFI CTTAAG 1 cut(s) 1822
BstAPI GCANNNNNTGC 2 cut(s) 325, 4840
BstAUI TGTACA 1 cut(s) 3805
BstBAI YACGTR 1 cut(s) 4178
BstBI TTCGAA 1 cut(s) 4552
BstDSI CCRYGG 4 cut(s) 198, 2108, 4500, 4746
BstHHI GCGC 1 cut(s) 4333
BstMAI GTCTC 7 cut(s) 247, 1216, 2305, 2657, 2682, 4408, 5125
BstMCI CGRYCG 1 cut(s) 1350
BstNI CCWGG 6 cut(s) 114, 1069, 2993, 3991, 4020, 4080
BstNSI RCATGY 9 cut(s) 857, 1083, 1246, 2294, 2330, 2609, 3080, 4779, 5710
BstPAI GACNNNNGTC 1 cut(s) 4666
BstSCI CCNGG 7 cut(s) 112, 1067, 2991, 3885, 3989, 4018, 4078
BstSFI CTRYAG 3 cut(s) 3935, 4922, 5442
BstSLI GKGCMC 4 cut(s) 482, 2035, 4357, 4836
BstSNI TACGTA 1 cut(s) 4178
BstV2I GAAGAC 1 cut(s) 4551
BstX2I RGATCY 7 cut(s) 673, 1339, 2228, 3311, 3610, 3819, 4043
BstXI CCANNNNNNTGG 2 cut(s) 113, 5195
BstYI RGATCY 7 cut(s) 673, 1339, 2228, 3311, 3610, 3819, 4043
BstZ17I GTATAC 1 cut(s) 4781
Bsu15I ATCGAT 1 cut(s) 1956
Bsu36I CCTNAGG 2 cut(s) 129, 5300
BsuI GTATCC 2 cut(s) 586, 2580
BsuTUI ATCGAT 1 cut(s) 1956
BtgI CCRYGG 4 cut(s) 198, 2108, 4500, 4746
BtgZI GCGATG 2 cut(s) 5529, 5552
BtsI GCAGTG 3 cut(s) 2253, 5528, 5595
BveI ACCTGC 2 cut(s) 2551, 5656
CaiI CAGNNNCTG 1 cut(s) 2195
CciI TCATGA 3 cut(s) 3582, 3693, 5575
CfoI GCGC 1 cut(s) 4333
Cfr10I RCCGGY 1 cut(s) 1345
ClaI ATCGAT 1 cut(s) 1956
CpoI CGGWCCG 1 cut(s) 4698
CseI GACGC 1 cut(s) 2639
Csp6I GTAC 6 cut(s) 2372, 2889, 3458, 3806, 4584, 5645
CspAI ACCGGT 1 cut(s) 1345
CspCI CAANNNNNGTGG 2 cut(s) 486, 521
CspI CGGWCCG 1 cut(s) 4698
CviQI GTAC 6 cut(s) 2372, 2889, 3458, 3806, 4584, 5645
DraI TTTAAA 2 cut(s) 2052, 5014
DraIII CACNNNGTG 3 cut(s) 1889, 3284, 4730
DriI GACNNNNNGTC 2 cut(s) 5138, 5347
EaeI YGGCCR 1 cut(s) 5358
Eam1104I CTCTTC 4 cut(s) 3102, 3265, 4062, 4155
Eam1105I GACNNNNNGTC 2 cut(s) 5138, 5347
EarI CTCTTC 4 cut(s) 3102, 3265, 4062, 4155
EciI GGCGGA 1 cut(s) 5108
Ecl136II GAGCTC 3 cut(s) 141, 1090, 3095
Eco105I TACGTA 1 cut(s) 4178
Eco130I CCWWGG 5 cut(s) 2004, 2108, 2724, 4306, 4746
Eco24I GRGCYC 4 cut(s) 143, 482, 1092, 3097
Eco31I GGTCTC 1 cut(s) 4408
Eco47I GGWCC 5 cut(s) 2071, 2096, 4376, 4698, 5684
Eco53kI GAGCTC 3 cut(s) 141, 1090, 3095
Eco57I CTGAAG 6 cut(s) 642, 1448, 2366, 2921, 4875, 5487
Eco81I CCTNAGG 2 cut(s) 129, 5300
Eco88I CYCGRG 2 cut(s) 166, 179
EcoICRI GAGCTC 3 cut(s) 141, 1090, 3095
EcoO109I RGGNCCY 4 cut(s) 479, 2071, 5481, 5684
EcoRI GAATTC 4 cut(s) 2767, 3020, 4524, 5658
EcoRII CCWGG 6 cut(s) 112, 1067, 2991, 3989, 4018, 4078
EcoT14I CCWWGG 5 cut(s) 2004, 2108, 2724, 4306, 4746
EcoT22I ATGCAT 2 cut(s) 373, 2332
EcoT38I GRGCYC 4 cut(s) 143, 482, 1092, 3097
ErhI CCWWGG 5 cut(s) 2004, 2108, 2724, 4306, 4746
Esp3I CGTCTC 2 cut(s) 247, 2657
FaqI GGGAC 4 cut(s) 1250, 2084, 3972, 5697
FauI CCCGC 1 cut(s) 38
FbaI TGATCA 2 cut(s) 1432, 3508
FblI GTMKAC 6 cut(s) 266, 1597, 4780, 4811, 5067, 5340
FriOI GRGCYC 4 cut(s) 143, 482, 1092, 3097
GlaI GCGC 1 cut(s) 4332
GsaI CCCAGC 2 cut(s) 298, 473
GsuI CTGGAG 5 cut(s) 76, 1655, 3363, 3632, 5186
HapII CCGG 5 cut(s) 6, 231, 1346, 3010, 3887
HgaI GACGC 1 cut(s) 2639
HhaI GCGC 1 cut(s) 4333
Hin6I GCGC 1 cut(s) 4331
HinP1I GCGC 1 cut(s) 4331
HincII GTYRAC 5 cut(s) 267, 2128, 5068, 5116, 5341
HindII GTYRAC 5 cut(s) 267, 2128, 5068, 5116, 5341
HindIII AAGCTT 6 cut(s) 919, 1493, 1701, 4506, 4691, 4986
HpaII CCGG 5 cut(s) 6, 231, 1346, 3010, 3887
HphI GGTGA 7 cut(s) 343, 532, 1643, 2164, 2444, 2639, 3953
Hpy99I CGWCG 2 cut(s) 15, 5069
HpyCH4IV ACGT 8 cut(s) 13, 240, 832, 1203, 1635, 2498, 4177, 4258
HpySE526I ACGT 8 cut(s) 13, 240, 832, 1203, 1635, 2498, 4177, 4258
HspAI GCGC 1 cut(s) 4331
Kpn2I TCCGGA 2 cut(s) 5, 3009
KpnI GGTACC 1 cut(s) 5648
Ksp22I TGATCA 2 cut(s) 1432, 3508
LguI GCTCTTC 2 cut(s) 3102, 4062
MaeII ACGT 8 cut(s) 13, 240, 832, 1203, 1635, 2498, 4177, 4258
MfeI CAATTG 3 cut(s) 1032, 2013, 4939
MflI RGATCY 7 cut(s) 673, 1339, 2228, 3311, 3610, 3819, 4043
MhlI GDGCHC 9 cut(s) 143, 482, 1092, 2035, 3097, 4057, 4264, 4357, 4836
MlsI TGGCCA 1 cut(s) 5360
MluNI TGGCCA 1 cut(s) 5360
MlyI GAGTC 5 cut(s) 802, 3011, 4511, 4676, 5593
MmeI TCCRAC 3 cut(s) 370, 3271, 4229
Mox20I TGGCCA 1 cut(s) 5360
Mph1103I ATGCAT 2 cut(s) 373, 2332
MroI TCCGGA 2 cut(s) 5, 3009
MroXI GAANNNNTTC 4 cut(s) 1769, 3792, 4221, 4548
MscI TGGCCA 1 cut(s) 5360
MslI CAYNNNNRTG 8 cut(s) 1845, 2982, 3393, 4626, 4683, 4751, 5155, 5580
Msp20I TGGCCA 1 cut(s) 5360
MspA1I CMGCKG 2 cut(s) 1811, 5243
MspCI CTTAAG 1 cut(s) 1822
MspI CCGG 5 cut(s) 6, 231, 1346, 3010, 3887
MspR9I CCNGG 7 cut(s) 114, 1069, 2993, 3887, 3991, 4020, 4080
MunI CAATTG 3 cut(s) 1032, 2013, 4939
MvaI CCWGG 6 cut(s) 114, 1069, 2993, 3991, 4020, 4080
NciI CCSGG 1 cut(s) 3887
NcoI CCATGG 2 cut(s) 2108, 4746
NmeAIII GCCGAG 1 cut(s) 2572
NsiI ATGCAT 2 cut(s) 373, 2332
NspI RCATGY 9 cut(s) 857, 1083, 1246, 2294, 2330, 2609, 3080, 4779, 5710
NspV TTCGAA 1 cut(s) 4552
PaeI GCATGC 1 cut(s) 3080
PaeR7I CTCGAG 2 cut(s) 166, 179
PagI TCATGA 3 cut(s) 3582, 3693, 5575
PciI ACATGT 3 cut(s) 2290, 4775, 5706
PciSI GCTCTTC 2 cut(s) 3102, 4062
PdmI GAANNNNTTC 4 cut(s) 1769, 3792, 4221, 4548
PflMI CCANNNNNTGG 1 cut(s) 1190
PinAI ACCGGT 1 cut(s) 1345
PleI GAGTC 5 cut(s) 801, 3010, 4511, 4675, 5593
PpsI GAGTC 5 cut(s) 801, 3010, 4511, 4675, 5593
Ppu21I YACGTR 1 cut(s) 4178
PpuMI RGGWCCY 2 cut(s) 2071, 5684
PscI ACATGT 3 cut(s) 2290, 4775, 5706
PshAI GACNNNNGTC 1 cut(s) 4666
PshBI ATTAAT 2 cut(s) 1187, 5085
PsiI TTATAA 2 cut(s) 3596, 5501
Psp124BI GAGCTC 3 cut(s) 143, 1092, 3097
Psp1406I AACGTT 2 cut(s) 832, 1203
Psp5II RGGWCCY 2 cut(s) 2071, 5684
Psp6I CCWGG 6 cut(s) 112, 1067, 2991, 3989, 4018, 4078
PspFI CCCAGC 2 cut(s) 294, 469
PspGI CCWGG 6 cut(s) 112, 1067, 2991, 3989, 4018, 4078
PspOMI GGGCCC 1 cut(s) 478
PspPPI RGGWCCY 2 cut(s) 2071, 5684
PstI CTGCAG 1 cut(s) 3939
PstNI CAGNNNCTG 1 cut(s) 2195
PsuI RGATCY 7 cut(s) 673, 1339, 2228, 3311, 3610, 3819, 4043
PvuII CAGCTG 1 cut(s) 5243
RsaI GTAC 6 cut(s) 2373, 2890, 3459, 3807, 4585, 5646
RsaNI GTAC 6 cut(s) 2372, 2889, 3458, 3806, 4584, 5645
RseI CAYNNNNRTG 8 cut(s) 1845, 2982, 3393, 4626, 4683, 4751, 5155, 5580
Rsr2I CGGWCCG 1 cut(s) 4698
RsrII CGGWCCG 1 cut(s) 4698
SacI GAGCTC 3 cut(s) 143, 1092, 3097
SalI GTCGAC 3 cut(s) 265, 5066, 5339
SapI GCTCTTC 2 cut(s) 3102, 4062
SchI GAGTC 5 cut(s) 802, 3011, 4511, 4676, 5593
ScrFI CCNGG 7 cut(s) 114, 1069, 2993, 3887, 3991, 4020, 4080
SduI GDGCHC 9 cut(s) 143, 482, 1092, 2035, 3097, 4057, 4264, 4357, 4836
SfcI CTRYAG 3 cut(s) 3935, 4922, 5442
Sfr274I CTCGAG 2 cut(s) 166, 179
SfuI TTCGAA 1 cut(s) 4552
SinI GGWCC 5 cut(s) 2071, 2096, 4376, 4698, 5684
SlaI CTCGAG 2 cut(s) 166, 179
SmiMI CAYNNNNRTG 8 cut(s) 1845, 2982, 3393, 4626, 4683, 4751, 5155, 5580
SmlI CTYRAG 9 cut(s) 166, 179, 916, 1486, 1535, 1698, 1822, 3146, 4664
SmoI CTYRAG 9 cut(s) 166, 179, 916, 1486, 1535, 1698, 1822, 3146, 4664
SnaBI TACGTA 1 cut(s) 4178
SpeI ACTAGT 4 cut(s) 554, 1895, 2272, 5260
SphI GCATGC 1 cut(s) 3080
SspI AATATT 4 cut(s) 1749, 3472, 3592, 4327
SstI GAGCTC 3 cut(s) 143, 1092, 3097
StyD4I CCNGG 7 cut(s) 112, 1067, 2991, 3885, 3989, 4018, 4078
StyI CCWWGG 5 cut(s) 2004, 2108, 2724, 4306, 4746
TaiI ACGT 8 cut(s) 16, 243, 835, 1206, 1638, 2501, 4180, 4261
TaqII GACCGA 3 cut(s) 207, 1544, 3014
TatI WGTACW 3 cut(s) 2371, 2888, 3805
TauI GCSGC 2 cut(s) 227, 230
TspGWI ACGGA 4 cut(s) 2147, 4489, 4674, 5219
Van91I CCANNNNNTGG 1 cut(s) 1190
Vha464I CTTAAG 1 cut(s) 1822
VneI GTGCAC 2 cut(s) 4353, 4832
VpaK11BI GGWCC 5 cut(s) 2071, 2096, 4376, 4698, 5684
VspI ATTAAT 2 cut(s) 1187, 5085
XbaI TCTAGA 3 cut(s) 2414, 3962, 4520
XceI RCATGY 9 cut(s) 857, 1083, 1246, 2294, 2330, 2609, 3080, 4779, 5710
XcmI CCANNNNNNNNNTGG 1 cut(s) 386
XhoI CTCGAG 2 cut(s) 166, 179
XmiI GTMKAC 6 cut(s) 266, 1597, 4780, 4811, 5067, 5340
XmnI GAANNNNTTC 4 cut(s) 1769, 3792, 4221, 4548
Zsp2I ATGCAT 2 cut(s) 373, 2332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.