Rh7CG296400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000582
Physical Location & Seq
Forward (+)
30368179 .. 30370781
2603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG296400.1

Sequence Viewer

Length: 969 bp
ATGAAGTGGAGAGAATTTTTCCAGAAAATTGGCATTGTGGATTTTGAGAAGGTAGTTCAAGTTGAGAAGGGTTTCACTGAGTTCTCTGTGGCTCTATTTAATAATCTGACTTGGGACCAGCACACTATTTCCCATGGGTTGAATGCCACAGATTGGGAATCACCTGAGTTAGTCCATTTATTATCCCTATTGTCCAGAGATGGCAACAGAAAAGGTTGTGAGTATCTCTTAGAGGTTCTCGATAAATTATGGGATGATTGCTATAGTGACAGAGCTACAGGGTACTGCTCTTCTAAGTCTGTTGCAGATAGAAAGCCCTTCAAATCTTCATTTATGAGCACCATCTGCGATGTGCAATGGGTAGTATCAGGAATGGATGATAAACTTCACTATCCCAAGGATCTATATCACGACAGTGTTGCAGTGCGGTCAATTCTTGGTGGATCTGCCCCATTTTTTGTTCCTAAGGCTAGCAGTGAAAAATTTGTATCTGATATTGGTTTTAAGACAAGAGTCTCTCTTCACAATGCTCTGGAGATGTTGAAACCATGGAGATGTGAGAATCCGTTTAGGGCCAGCCTAGCACAAATGTCCAAATTTTACTCATTAATCTGGAATGAAATGGCTTCTTCAAAGAAGACAACTGCAGAGGAATTCTGTTTGGAACCTTTTGTATTTGTTCCATATGAATCTAGCTTCCGGCATGAGGATGTGGTGTCTGGTACATTTCTGTCCCTTGAAGAAGTATACTGGGATGATTCTACTTTCTTTGTGGACCAAATCAAGGAGATCCATCATCAGTGCAACTCAACAGTTGGTAATCATGGCGGCCCCATAAACAGGATTCTGAGTAATTTCTACCCGGCCCTTCATGACTTCTTTGTTGATATATGTGGAGTACATGAGATCCCTCCTCTTCGTAGCTACCTTCAGATTTTGCTACAGTTTTCAAATGCTGTTTTGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3883

Protein Analysis

322

Amino Acids

36.98

Weight (kDa)

5.54

Isoelectric Point (pI)

37.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08300 AT1G08300 AT1G08300 AT4G13750
fragaria_vesca FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_4g13620 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660
malus_domestica MD04G1012800.v1.1 MD04G1012900.v1.1 MD04G1013100.v1.1 MD04G1013300.v1.1
prunus_persica Prupe.1G159000_v2.0.a1 Prupe.1G159100_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G358100_v2.0.a1
pyrus_communis pycom04g01020 pycom04g01030
rosa_chinensis RchiOBHm_Chr4g0414341 RchiOBHm_Chr4g0414351 RchiOBHm_Chr6g0275261 RchiOBHm_Chr7g0213881 RchiOBHm_Chr7g0213891
rosa_laevigata RLG00000008153 RLG00000008155 RLG00000013477
rosa_multiflora Rmu_co8510163.1_g000001 Rmu_sc0004087.1_g000027 Rmu_sc0005196.1_g000014 Rmu_sc0005558.1_g000005 Rmu_sc0005558.1_g000006 Rmu_sc0008100.1_g000005 Rmu_sc0008560.1_g000005
rosa_roxburghii Rroxscaffold_5G00358210 Rroxscaffold_5G00358220 Rroxscaffold_7G00187920 Rroxscaffold_7G00187930 Rroxscaffold_7G00193450
rosa_rugosa Rorug04G0127100 Rorug04G0127200 Rorug04G0127300 Rorug04G0127400 Rorug06G0090600
rosa_samantha Rh4AG185200 Rh4AG185300 Rh4AG185500 Rh4BG184700 Rh4BG184800 Rh4CG198000 Rh4CG198100 Rh4DG182400 Rh4DG182600 Rh6AG204100 Rh6BG207000 Rh6CG209600 Rh6DG200000 Rh7AG277400 Rh7CG296400 Rh7CG296500
rosa_wichuraiana Rw4G015850 Rw4G015860 Rw6G017730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 153
AccI GTMKAC 1 cut(s) 747
AciI CCGC 2 cut(s) 427, 828
AclWI GGATC 4 cut(s) 408, 451, 784, 901
AcsI RAATTY 4 cut(s) 14, 482, 596, 653
AcuI CTGAAG 1 cut(s) 914
AfaI GTAC 3 cut(s) 284, 724, 900
AfiI CCNNNNNNNGG 4 cut(s) 153, 706, 784, 840
AgsI TTSAA 7 cut(s) 59, 142, 322, 544, 633, 740, 951
AleI CACNNNNGTG 1 cut(s) 414
AluBI AGCT 3 cut(s) 275, 696, 924
AluI AGCT 3 cut(s) 275, 696, 924
Alw21I GWGCWC 1 cut(s) 341
Alw26I GTCTC 1 cut(s) 520
AlwI GGATC 4 cut(s) 408, 451, 784, 901
AoxI GGCC 3 cut(s) 573, 829, 864
ApoI RAATTY 4 cut(s) 14, 482, 596, 653
AseI ATTAAT 1 cut(s) 608
Asp700I GAANNNNTTC 1 cut(s) 71
AspS9I GGNCC 5 cut(s) 115, 573, 775, 830, 865
AsuC2I CCSGG 1 cut(s) 863
AsuHPI GGTGA 1 cut(s) 153
AsuNHI GCTAGC 1 cut(s) 470
AvaII GGWCC 2 cut(s) 115, 775
AxyI CCTNAGG 1 cut(s) 465
BbsI GAAGAC 1 cut(s) 644
Bbv12I GWGCWC 1 cut(s) 341
BccI CCATC 3 cut(s) 194, 350, 801
BcgI CGANNNNNNTGC 2 cut(s) 401, 435
BcnI CCSGG 1 cut(s) 863
BcoDI GTCTC 1 cut(s) 520
BfaI CTAG 3 cut(s) 471, 581, 693
BfmI CTRYAG 4 cut(s) 262, 276, 645, 941
BisI GCNGC 1 cut(s) 829
BlsI GCNGC 1 cut(s) 830
Bme1390I CCNGG 1 cut(s) 863
Bme18I GGWCC 2 cut(s) 115, 775
BmgT120I GGNCC 5 cut(s) 115, 573, 775, 830, 865
BmiI GGNNCC 3 cut(s) 116, 666, 832
BmrFI CCNGG 1 cut(s) 863
BmrI ACTGGG 1 cut(s) 760
BmtI GCTAGC 1 cut(s) 474
BmuI ACTGGG 1 cut(s) 760
BoxI GACNNNNGTC 1 cut(s) 512
BpiI GAAGAC 1 cut(s) 644
BpmI CTGGAG 1 cut(s) 554
BpuMI CCSGG 1 cut(s) 863
BsaBI GATNNNNATC 1 cut(s) 405
BsaJI CCNNGG 3 cut(s) 133, 396, 548
Bsc4I CCNNNNNNNGG 4 cut(s) 153, 706, 784, 840
Bse1I ACTGG 1 cut(s) 755
Bse21I CCTNAGG 1 cut(s) 465
Bse3DI GCAATG 1 cut(s) 362
Bse8I GATNNNNATC 1 cut(s) 405
BseDI CCNNGG 3 cut(s) 133, 396, 548
BseGI GGATG 4 cut(s) 259, 382, 715, 760
BseJI GATNNNNATC 1 cut(s) 405
BseLI CCNNNNNNNGG 4 cut(s) 153, 706, 784, 840
BseMI GCAATG 1 cut(s) 362
BseMII CTCAG 3 cut(s) 69, 156, 839
BseNI ACTGG 1 cut(s) 755
BseRI GAGGAG 1 cut(s) 903
BshFI GGCC 3 cut(s) 575, 831, 866
BsiHKAI GWGCWC 1 cut(s) 341
BsiSI CCGG 2 cut(s) 700, 863
BslFI GGGAC 2 cut(s) 128, 718
BslI CCNNNNNNNGG 4 cut(s) 153, 706, 784, 840
BsmAI GTCTC 1 cut(s) 520
BsmFI GGGAC 2 cut(s) 128, 718
BsmI GAATGC 1 cut(s) 148
BsnI GGCC 3 cut(s) 575, 831, 866
Bsp1286I GDGCHC 1 cut(s) 341
Bsp143I GATC 4 cut(s) 400, 443, 789, 906
Bsp19I CCATGG 2 cut(s) 133, 548
BspACI CCGC 2 cut(s) 427, 828
BspANI GGCC 3 cut(s) 575, 831, 866
BspCNI CTCAG 3 cut(s) 70, 157, 840
BspHI TCATGA 1 cut(s) 871
BspLI GGNNCC 3 cut(s) 116, 666, 832
BspMAI CTGCAG 1 cut(s) 649
BspOI GCTAGC 1 cut(s) 474
BspPI GGATC 4 cut(s) 408, 451, 784, 901
BspQI GCTCTTC 1 cut(s) 295
BsrDI GCAATG 1 cut(s) 362
BsrI ACTGG 1 cut(s) 755
BssECI CCNNGG 3 cut(s) 133, 396, 548
BssMI GATC 4 cut(s) 400, 443, 789, 906
BssNAI GTATAC 1 cut(s) 748
BssT1I CCWWGG 3 cut(s) 133, 396, 548
Bst1107I GTATAC 1 cut(s) 748
Bst4CI ACNGT 3 cut(s) 416, 814, 945
Bst6I CTCTTC 3 cut(s) 295, 525, 921
BstAPI GCANNNNNTGC 1 cut(s) 345
BstC8I GCNNGC 2 cut(s) 472, 577
BstDEI CTNAG 6 cut(s) 78, 165, 229, 294, 465, 848
BstDSI CCRYGG 2 cut(s) 133, 548
BstF5I GGATG 4 cut(s) 259, 382, 715, 760
BstKTI GATC 4 cut(s) 403, 446, 792, 909
BstMAI GTCTC 1 cut(s) 520
BstMBI GATC 4 cut(s) 400, 443, 789, 906
BstMWI GCNNNNNNNGC 2 cut(s) 345, 581
BstPAI GACNNNNGTC 1 cut(s) 512
BstSCI CCNGG 1 cut(s) 861
BstSFI CTRYAG 4 cut(s) 262, 276, 645, 941
BstV2I GAAGAC 1 cut(s) 644
BstX2I RGATCY 4 cut(s) 400, 443, 789, 906
BstXI CCANNNNNNTGG 1 cut(s) 29
BstYI RGATCY 4 cut(s) 400, 443, 789, 906
BstZ17I GTATAC 1 cut(s) 748
Bsu36I CCTNAGG 1 cut(s) 465
BsuRI GGCC 3 cut(s) 575, 831, 866
BtgI CCRYGG 2 cut(s) 133, 548
BtgZI GCGATG 1 cut(s) 363
BtsCI GGATG 4 cut(s) 259, 382, 715, 760
BtsI GCAGTG 2 cut(s) 429, 481
BtsIMutI CAGTG 5 cut(s) 75, 421, 429, 481, 806
Cac8I GCNNGC 2 cut(s) 472, 577
CciI TCATGA 1 cut(s) 871
Cfr13I GGNCC 5 cut(s) 115, 573, 775, 830, 865
Csp6I GTAC 3 cut(s) 283, 723, 899
CviAII CATG 6 cut(s) 134, 549, 704, 824, 872, 902
CviQI GTAC 3 cut(s) 283, 723, 899
DdeI CTNAG 6 cut(s) 78, 165, 229, 294, 465, 848
DpnI GATC 4 cut(s) 402, 445, 791, 908
DpnII GATC 4 cut(s) 400, 443, 789, 906
Eam1104I CTCTTC 3 cut(s) 295, 525, 921
EarI CTCTTC 3 cut(s) 295, 525, 921
Eco130I CCWWGG 3 cut(s) 133, 396, 548
Eco47I GGWCC 2 cut(s) 115, 775
Eco57I CTGAAG 1 cut(s) 914
Eco81I CCTNAGG 1 cut(s) 465
EcoRI GAATTC 1 cut(s) 653
EcoT14I CCWWGG 3 cut(s) 133, 396, 548
ErhI CCWWGG 3 cut(s) 133, 396, 548
FaeI CATG 6 cut(s) 137, 552, 707, 827, 875, 905
FaqI GGGAC 2 cut(s) 128, 718
FatI CATG 6 cut(s) 133, 548, 703, 823, 871, 901
FauNDI CATATG 1 cut(s) 685
FblI GTMKAC 1 cut(s) 747
Fnu4HI GCNGC 1 cut(s) 829
FokI GGATG 4 cut(s) 266, 389, 722, 767
Fsp4HI GCNGC 1 cut(s) 829
FspBI CTAG 3 cut(s) 471, 581, 693
GluI GCNGC 1 cut(s) 829
GsuI CTGGAG 1 cut(s) 554
HaeIII GGCC 3 cut(s) 575, 831, 866
HapII CCGG 2 cut(s) 700, 863
Hin1II CATG 6 cut(s) 137, 552, 707, 827, 875, 905
HinfI GANTC 6 cut(s) 158, 513, 562, 689, 758, 844
HpaII CCGG 2 cut(s) 700, 863
HphI GGTGA 1 cut(s) 153
Hpy166II GTNNAC 2 cut(s) 748, 775
Hpy188I TCNGA 4 cut(s) 108, 493, 849, 933
Hpy188III TCNNGA 8 cut(s) 22, 195, 239, 369, 410, 533, 613, 872
Hpy8I GTNNAC 2 cut(s) 748, 775
HpyAV CCTTC 5 cut(s) 43, 61, 328, 878, 938
HpyCH4III ACNGT 3 cut(s) 416, 814, 945
HpyCH4V TGCA 5 cut(s) 305, 355, 422, 647, 804
HpyF10VI GCNNNNNNNGC 2 cut(s) 345, 581
HpyF3I CTNAG 6 cut(s) 78, 165, 229, 294, 465, 848
Hsp92II CATG 6 cut(s) 137, 552, 707, 827, 875, 905
Kzo9I GATC 4 cut(s) 400, 443, 789, 906
LguI GCTCTTC 1 cut(s) 295
MaeI CTAG 3 cut(s) 471, 581, 693
MaeIII GTNAC 1 cut(s) 266
MalI GATC 4 cut(s) 402, 445, 791, 908
MboI GATC 4 cut(s) 400, 443, 789, 906
MboII GAAGA 7 cut(s) 282, 318, 512, 621, 649, 752, 908
MflI RGATCY 4 cut(s) 400, 443, 789, 906
MhlI GDGCHC 1 cut(s) 341
MluCI AATT 8 cut(s) 14, 27, 245, 432, 482, 596, 653, 853
MlyI GAGTC 1 cut(s) 522
MnlI CCTC 5 cut(s) 226, 643, 700, 921, 924
MroXI GAANNNNTTC 1 cut(s) 71
MseI TTAA 3 cut(s) 99, 504, 608
MslI CAYNNNNRTG 3 cut(s) 414, 553, 708
MspI CCGG 2 cut(s) 700, 863
MspR9I CCNGG 1 cut(s) 863
Mva1269I GAATGC 1 cut(s) 148
MwoI GCNNNNNNNGC 2 cut(s) 345, 581
NciI CCSGG 1 cut(s) 863
NcoI CCATGG 2 cut(s) 133, 548
NdeI CATATG 1 cut(s) 685
NdeII GATC 4 cut(s) 400, 443, 789, 906
NheI GCTAGC 1 cut(s) 470
NlaIII CATG 6 cut(s) 137, 552, 707, 827, 875, 905
NlaIV GGNNCC 3 cut(s) 116, 666, 832
NmuCI GTSAC 1 cut(s) 266
OliI CACNNNNGTG 1 cut(s) 414
PagI TCATGA 1 cut(s) 871
PciSI GCTCTTC 1 cut(s) 295
PctI GAATGC 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 5 cut(s) 158, 562, 689, 758, 844
PflMI CCANNNNNTGG 1 cut(s) 153
PkrI GCNGC 1 cut(s) 830
PleI GAGTC 1 cut(s) 521
PpsI GAGTC 1 cut(s) 521
PshAI GACNNNNGTC 1 cut(s) 512
PshBI ATTAAT 1 cut(s) 608
PspN4I GGNNCC 3 cut(s) 116, 666, 832
PspPI GGNCC 5 cut(s) 115, 573, 775, 830, 865
PstI CTGCAG 1 cut(s) 649
PsuI RGATCY 4 cut(s) 400, 443, 789, 906
RsaI GTAC 3 cut(s) 284, 724, 900
RsaNI GTAC 3 cut(s) 283, 723, 899
RseI CAYNNNNRTG 3 cut(s) 414, 553, 708
SapI GCTCTTC 1 cut(s) 295
SaqAI TTAA 3 cut(s) 99, 504, 608
SatI GCNGC 1 cut(s) 829
Sau3AI GATC 4 cut(s) 400, 443, 789, 906
Sau96I GGNCC 5 cut(s) 115, 573, 775, 830, 865
SchI GAGTC 1 cut(s) 522
ScrFI CCNGG 1 cut(s) 863
SduI GDGCHC 1 cut(s) 341
SetI ASST 9 cut(s) 54, 166, 217, 237, 277, 670, 698, 926, 930
SfcI CTRYAG 4 cut(s) 262, 276, 645, 941
SinI GGWCC 2 cut(s) 115, 775
SmiMI CAYNNNNRTG 3 cut(s) 414, 553, 708
Sse9I AATT 8 cut(s) 14, 27, 245, 432, 482, 596, 653, 853
SsiI CCGC 2 cut(s) 427, 828
SspMI CTAG 3 cut(s) 471, 581, 693
StyD4I CCNGG 1 cut(s) 861
StyI CCWWGG 3 cut(s) 133, 396, 548
TaaI ACNGT 3 cut(s) 416, 814, 945
TaqI TCGA 1 cut(s) 240
TasI AATT 8 cut(s) 14, 27, 245, 432, 482, 596, 653, 853
TatI WGTACW 1 cut(s) 898
TauI GCSGC 1 cut(s) 831
TfiI GAWTC 5 cut(s) 158, 562, 689, 758, 844
Tru1I TTAA 3 cut(s) 99, 504, 608
Tru9I TTAA 3 cut(s) 99, 504, 608
TscAI CASTG 5 cut(s) 82, 421, 429, 481, 806
TseFI GTSAC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 5 cut(s) 17, 318, 633, 702, 860
TspGWI ACGGA 1 cut(s) 555
TspRI CASTG 5 cut(s) 82, 421, 429, 481, 806
Van91I CCANNNNNTGG 1 cut(s) 153
VpaK11BI GGWCC 2 cut(s) 115, 775
VspI ATTAAT 1 cut(s) 608
XapI RAATTY 4 cut(s) 14, 482, 596, 653
XmiI GTMKAC 1 cut(s) 747
XmnI GAANNNNTTC 1 cut(s) 71
XspI CTAG 3 cut(s) 471, 581, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.