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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 630, 3932, 5768, 6932 |
| AarI | CACCTGC | 1 cut(s) | 397 |
| AatII | GACGTC | 1 cut(s) | 13 |
| Acc36I | ACCTGC | 5 cut(s) | 397, 689, 2884, 5237, 5326 |
| AccB1I | GGYRCC | 5 cut(s) | 409, 2374, 7171, 7409, 8059 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1520, 4418 |
| AccI | GTMKAC | 7 cut(s) | 273, 1716, 1945, 4896, 5225, 6832, 7001 |
| AccII | CGCG | 2 cut(s) | 279, 5111 |
| AccIII | TCCGGA | 2 cut(s) | 1556, 1618 |
| AclI | AACGTT | 1 cut(s) | 898 |
| AcoI | YGGCCR | 4 cut(s) | 2317, 2949, 6057, 7319 |
| AcuI | CTGAAG | 7 cut(s) | 459, 1251, 1796, 4241, 7004, 7461, 8063 |
| AcyI | GRCGYC | 2 cut(s) | 10, 7410 |
| AdeI | CACNNNGTG | 1 cut(s) | 3620 |
| AfeI | AGCGCT | 1 cut(s) | 6818 |
| AflII | CTTAAG | 3 cut(s) | 833, 6431, 6497 |
| AflIII | ACRYGT | 3 cut(s) | 2632, 3813, 5546 |
| AhlI | ACTAGT | 1 cut(s) | 2614 |
| AjnI | CCWGG | 6 cut(s) | 3327, 4286, 4315, 4494, 6292, 7345 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1985, 2017, 7434, 7466 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1148, 1180, 4665, 4697 |
| Alw21I | GWGCWC | 7 cut(s) | 386, 3433, 3616, 4654, 4937, 7369, 7806 |
| Alw26I | GTCTC | 9 cut(s) | 331, 346, 420, 1546, 2799, 3015, 3235, 6329, 7723 |
| Alw44I | GTGCAC | 1 cut(s) | 7365 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 2537, 5778, 7520 |
| Ama87I | CYCGRG | 2 cut(s) | 3559, 4376 |
| Aor13HI | TCCGGA | 2 cut(s) | 1556, 1618 |
| Aor51HI | AGCGCT | 1 cut(s) | 6818 |
| ApaI | GGGCCC | 1 cut(s) | 566 |
| ApaLI | GTGCAC | 1 cut(s) | 7365 |
| ArsI | GACNNNNNNTTYG | 8 cut(s) | 281, 313, 1582, 1614, 2405, 2437, 7574, 7606 |
| AseI | ATTAAT | 4 cut(s) | 1517, 3033, 4457, 6041 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 487, 490, 828, 2117, 8078 |
| AspLEI | GCGC | 9 cut(s) | 35, 281, 355, 5113, 5723, 5862, 6019, 6819, 7412 |
| AsuC2I | CCSGG | 3 cut(s) | 806, 4377, 4378 |
| AsuII | TTCGAA | 3 cut(s) | 481, 6065, 7127 |
| AsuNHI | GCTAGC | 1 cut(s) | 1103 |
| AvaI | CYCGRG | 2 cut(s) | 3559, 4376 |
| AvaII | GGWCC | 9 cut(s) | 301, 2413, 2438, 4163, 4534, 4673, 5873, 6208, 7203 |
| AxyI | CCTNAGG | 3 cut(s) | 240, 6171, 6468 |
| BaeGI | GKGCMC | 5 cut(s) | 566, 1260, 2000, 2377, 7369 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3777, 3810 |
| BalI | TGGCCA | 3 cut(s) | 2319, 2951, 6059 |
| BamHI | GGATCC | 2 cut(s) | 1510, 2570 |
| BanI | GGYRCC | 5 cut(s) | 409, 2374, 7171, 7409, 8059 |
| BanII | GRGCYC | 5 cut(s) | 386, 566, 3433, 6467, 7658 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 3814, 3846, 6657, 6689 |
| BauI | CACGAG | 2 cut(s) | 6738, 7362 |
| BbsI | GAAGAC | 3 cut(s) | 1607, 3356, 6971 |
| Bbv12I | GWGCWC | 7 cut(s) | 386, 3433, 3616, 4654, 4937, 7369, 7806 |
| BbvCI | CCTCAGC | 1 cut(s) | 1431 |
| BceAI | ACGGC | 5 cut(s) | 205, 266, 397, 1160, 6398 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 3398, 3432, 5844, 5878, 6679, 6713 |
| BciT130I | CCWGG | 6 cut(s) | 3329, 4288, 4317, 4496, 6294, 7347 |
| BciVI | GTATCC | 1 cut(s) | 670 |
| BclI | TGATCA | 1 cut(s) | 1780 |
| BcnI | CCSGG | 3 cut(s) | 806, 4377, 4378 |
| BcoDI | GTCTC | 9 cut(s) | 331, 346, 420, 1546, 2799, 3015, 3235, 6329, 7723 |
| BcuI | ACTAGT | 1 cut(s) | 2614 |
| BfmI | CTRYAG | 7 cut(s) | 1451, 1713, 2538, 2877, 5219, 5709, 6359 |
| BfoI | RGCGCY | 3 cut(s) | 356, 6820, 7413 |
| BfrI | CTTAAG | 3 cut(s) | 833, 6431, 6497 |
| BfuAI | ACCTGC | 5 cut(s) | 397, 689, 2884, 5237, 5326 |
| BfuI | GTATCC | 1 cut(s) | 670 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 226 |
| BglII | AGATCT | 3 cut(s) | 757, 3946, 4168 |
| Bme1390I | CCNGG | 9 cut(s) | 806, 3329, 4288, 4317, 4377, 4378, 4496, 6294, 7347 |
| Bme18I | GGWCC | 9 cut(s) | 301, 2413, 2438, 4163, 4534, 4673, 5873, 6208, 7203 |
| BmeT110I | CYCGRG | 2 cut(s) | 3559, 4376 |
| BmrFI | CCNGG | 9 cut(s) | 806, 3329, 4288, 4317, 4377, 4378, 4496, 6294, 7347 |
| BmrI | ACTGGG | 4 cut(s) | 2419, 4751, 4947, 7734 |
| BmtI | GCTAGC | 1 cut(s) | 1107 |
| BmuI | ACTGGG | 4 cut(s) | 2419, 4751, 4947, 7734 |
| BoxI | GACNNNNGTC | 2 cut(s) | 4963, 5961 |
| BpiI | GAAGAC | 3 cut(s) | 1607, 3356, 6971 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 7640, 7672 |
| BpmI | CTGGAG | 8 cut(s) | 284, 350, 400, 2003, 3192, 3699, 7232, 7629 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1431, 2108 |
| Bpu14I | TTCGAA | 3 cut(s) | 481, 6065, 7127 |
| BpuEI | CTTGAG | 6 cut(s) | 2031, 3503, 4951, 4982, 6115, 6842 |
| BpuMI | CCSGG | 3 cut(s) | 806, 4377, 4378 |
| Bsa29I | ATCGAT | 1 cut(s) | 5042 |
| BsaAI | YACGTR | 3 cut(s) | 4094, 5075, 6677 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3951 |
| BsaHI | GRCGYC | 2 cut(s) | 10, 7410 |
| BsaI | GGTCTC | 2 cut(s) | 346, 6329 |
| BsaWI | WCCGGW | 2 cut(s) | 1556, 1618 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 3697, 3727, 7728, 7758 |
| Bse118I | RCCGGY | 1 cut(s) | 314 |
| Bse1I | ACTGG | 9 cut(s) | 1694, 2414, 4294, 4746, 4942, 5435, 5638, 7322, 7729 |
| Bse21I | CCTNAGG | 3 cut(s) | 240, 6171, 6468 |
| Bse3DI | GCAATG | 4 cut(s) | 1804, 4659, 4785, 6781 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3951 |
| BseAI | TCCGGA | 2 cut(s) | 1556, 1618 |
| BseBI | CCWGG | 6 cut(s) | 3329, 4288, 4317, 4496, 6294, 7347 |
| BseCI | ATCGAT | 1 cut(s) | 5042 |
| BseJI | GATNNNNATC | 1 cut(s) | 3951 |
| BseMI | GCAATG | 4 cut(s) | 1804, 4659, 4785, 6781 |
| BseNI | ACTGG | 9 cut(s) | 1694, 2414, 4294, 4746, 4942, 5435, 5638, 7322, 7729 |
| BseRI | GAGGAG | 6 cut(s) | 13, 222, 1290, 6098, 6333, 7148 |
| BseSI | GKGCMC | 5 cut(s) | 566, 1260, 2000, 2377, 7369 |
| BseYI | CCCAGC | 4 cut(s) | 164, 201, 1168, 7837 |
| BsgI | GTGCAG | 8 cut(s) | 2986, 3227, 4911, 5491, 6256, 7061, 7326, 8087 |
| Bsh1236I | CGCG | 2 cut(s) | 279, 5111 |
| Bsh1285I | CGRYCG | 2 cut(s) | 277, 299 |
| BshNI | GGYRCC | 5 cut(s) | 409, 2374, 7171, 7409, 8059 |
| BshVI | ATCGAT | 1 cut(s) | 5042 |
| BsiEI | CGRYCG | 2 cut(s) | 277, 299 |
| BsiHKAI | GWGCWC | 7 cut(s) | 386, 3433, 3616, 4654, 4937, 7369, 7806 |
| BsiHKCI | CYCGRG | 2 cut(s) | 3559, 4376 |
| BsiSI | CCGG | 6 cut(s) | 27, 315, 805, 1557, 1619, 4377 |
| BsiWI | CGTACG | 1 cut(s) | 6677 |
| BslFI | GGGAC | 8 cut(s) | 2426, 2621, 4269, 4752, 5578, 5602, 6151, 7189 |
| BsmAI | GTCTC | 9 cut(s) | 331, 346, 420, 1546, 2799, 3015, 3235, 6329, 7723 |
| BsmBI | CGTCTC | 2 cut(s) | 331, 420 |
| BsmFI | GGGAC | 8 cut(s) | 2426, 2621, 4269, 4752, 5578, 5602, 6151, 7189 |
| BsmI | GAATGC | 4 cut(s) | 1162, 2925, 5696, 6515 |
| Bso31I | GGTCTC | 2 cut(s) | 346, 6329 |
| BsoBI | CYCGRG | 2 cut(s) | 3559, 4376 |
| Bsp119I | TTCGAA | 3 cut(s) | 481, 6065, 7127 |
| Bsp120I | GGGCCC | 1 cut(s) | 562 |
| Bsp13I | TCCGGA | 2 cut(s) | 1556, 1618 |
| Bsp1407I | TGTACA | 4 cut(s) | 1789, 4102, 6529, 8004 |
| Bsp19I | CCATGG | 2 cut(s) | 2450, 7110 |
| BspDI | ATCGAT | 1 cut(s) | 5042 |
| BspEI | TCCGGA | 2 cut(s) | 1556, 1618 |
| BspFNI | CGCG | 2 cut(s) | 279, 5111 |
| BspHI | TCATGA | 3 cut(s) | 2995, 3918, 6301 |
| BspMAI | CTGCAG | 2 cut(s) | 1455, 2881 |
| BspMI | ACCTGC | 5 cut(s) | 397, 689, 2884, 5237, 5326 |
| BspOI | GCTAGC | 1 cut(s) | 1107 |
| BspQI | GCTCTTC | 2 cut(s) | 543, 6807 |
| BspT104I | TTCGAA | 3 cut(s) | 481, 6065, 7127 |
| BspT107I | GGYRCC | 5 cut(s) | 409, 2374, 7171, 7409, 8059 |
| BspTI | CTTAAG | 3 cut(s) | 833, 6431, 6497 |
| BspTNI | GGTCTC | 2 cut(s) | 346, 6329 |
| BsrDI | GCAATG | 4 cut(s) | 1804, 4659, 4785, 6781 |
| BsrFI | RCCGGY | 1 cut(s) | 314 |
| BsrGI | TGTACA | 4 cut(s) | 1789, 4102, 6529, 8004 |
| BsrI | ACTGG | 9 cut(s) | 1694, 2414, 4294, 4746, 4942, 5435, 5638, 7322, 7729 |
| BssAI | RCCGGY | 1 cut(s) | 314 |
| BssNAI | GTATAC | 1 cut(s) | 7002 |
| BssNI | GRCGYC | 2 cut(s) | 10, 7410 |
| BssSI | CACGAG | 2 cut(s) | 6738, 7362 |
| BssT1I | CCWWGG | 7 cut(s) | 1683, 1900, 2346, 2450, 4603, 6654, 7110 |
| Bst1107I | GTATAC | 1 cut(s) | 7002 |
| Bst2BI | CACGAG | 2 cut(s) | 6738, 7362 |
| Bst2UI | CCWGG | 6 cut(s) | 3329, 4288, 4317, 4496, 6294, 7347 |
| Bst6I | CTCTTC | 7 cut(s) | 543, 1128, 3343, 3974, 4452, 6660, 6807 |
| BstACI | GRCGYC | 2 cut(s) | 10, 7410 |
| BstAFI | CTTAAG | 3 cut(s) | 833, 6431, 6497 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 409, 6410 |
| BstAUI | TGTACA | 4 cut(s) | 1789, 4102, 6529, 8004 |
| BstBAI | YACGTR | 3 cut(s) | 4094, 5075, 6677 |
| BstBI | TTCGAA | 3 cut(s) | 481, 6065, 7127 |
| BstDSI | CCRYGG | 3 cut(s) | 282, 2450, 7110 |
| BstEII | GGTNACC | 1 cut(s) | 2494 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1305 |
| BstFNI | CGCG | 2 cut(s) | 279, 5111 |
| BstH2I | RGCGCY | 3 cut(s) | 356, 6820, 7413 |
| BstHHI | GCGC | 9 cut(s) | 35, 281, 355, 5113, 5723, 5862, 6019, 6819, 7412 |
| BstMAI | GTCTC | 9 cut(s) | 331, 346, 420, 1546, 2799, 3015, 3235, 6329, 7723 |
| BstMCI | CGRYCG | 2 cut(s) | 277, 299 |
| BstNI | CCWGG | 6 cut(s) | 3329, 4288, 4317, 4496, 6294, 7347 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 4963, 5961 |
| BstPI | GGTNACC | 1 cut(s) | 2494 |
| BstSCI | CCNGG | 9 cut(s) | 804, 3327, 4286, 4315, 4375, 4376, 4494, 6292, 7345 |
| BstSFI | CTRYAG | 7 cut(s) | 1451, 1713, 2538, 2877, 5219, 5709, 6359 |
| BstSLI | GKGCMC | 5 cut(s) | 566, 1260, 2000, 2377, 7369 |
| BstSNI | TACGTA | 3 cut(s) | 4094, 5075, 6677 |
| BstUI | CGCG | 2 cut(s) | 279, 5111 |
| BstV2I | GAAGAC | 3 cut(s) | 1607, 3356, 6971 |
| BstX2I | RGATCY | 9 cut(s) | 757, 1510, 1895, 2570, 3188, 3647, 3911, 3946, 4168 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 374, 1190, 5492 |
| BstYI | RGATCY | 9 cut(s) | 757, 1510, 1895, 2570, 3188, 3647, 3911, 3946, 4168 |
| BstZ17I | GTATAC | 1 cut(s) | 7002 |
| Bsu15I | ATCGAT | 1 cut(s) | 5042 |
| Bsu36I | CCTNAGG | 3 cut(s) | 240, 6171, 6468 |
| BsuI | GTATCC | 1 cut(s) | 670 |
| BsuTUI | ATCGAT | 1 cut(s) | 5042 |
| BtgI | CCRYGG | 3 cut(s) | 282, 2450, 7110 |
| BtgZI | GCGATG | 1 cut(s) | 657 |
| BtsI | GCAGTG | 3 cut(s) | 2595, 4392, 5862 |
| BveI | ACCTGC | 5 cut(s) | 397, 689, 2884, 5237, 5326 |
| CaiI | CAGNNNCTG | 3 cut(s) | 2537, 5778, 7520 |
| CciI | TCATGA | 3 cut(s) | 2995, 3918, 6301 |
| CfoI | GCGC | 9 cut(s) | 35, 281, 355, 5113, 5723, 5862, 6019, 6819, 7412 |
| Cfr10I | RCCGGY | 1 cut(s) | 314 |
| Cfr9I | CCCGGG | 1 cut(s) | 4376 |
| ClaI | ATCGAT | 1 cut(s) | 5042 |
| CseI | GACGC | 1 cut(s) | 313 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 570, 605 |
| DinI | GGCGCC | 1 cut(s) | 7411 |
| DraI | TTTAAA | 6 cut(s) | 1380, 2055, 3576, 5311, 5755, 7753 |
| DraIII | CACNNNGTG | 1 cut(s) | 3620 |
| EaeI | YGGCCR | 4 cut(s) | 2317, 2949, 6057, 7319 |
| Eam1104I | CTCTTC | 7 cut(s) | 543, 1128, 3343, 3974, 4452, 6660, 6807 |
| EarI | CTCTTC | 7 cut(s) | 543, 1128, 3343, 3974, 4452, 6660, 6807 |
| EciI | GGCGGA | 2 cut(s) | 225, 3685 |
| Ecl136II | GAGCTC | 2 cut(s) | 384, 3431 |
| Eco105I | TACGTA | 3 cut(s) | 4094, 5075, 6677 |
| Eco130I | CCWWGG | 7 cut(s) | 1683, 1900, 2346, 2450, 4603, 6654, 7110 |
| Eco24I | GRGCYC | 5 cut(s) | 386, 566, 3433, 6467, 7658 |
| Eco31I | GGTCTC | 2 cut(s) | 346, 6329 |
| Eco32I | GATATC | 2 cut(s) | 5328, 6877 |
| Eco47I | GGWCC | 9 cut(s) | 301, 2413, 2438, 4163, 4534, 4673, 5873, 6208, 7203 |
| Eco47III | AGCGCT | 1 cut(s) | 6818 |
| Eco53kI | GAGCTC | 2 cut(s) | 384, 3431 |
| Eco57I | CTGAAG | 7 cut(s) | 459, 1251, 1796, 4241, 7004, 7461, 8063 |
| Eco81I | CCTNAGG | 3 cut(s) | 240, 6171, 6468 |
| Eco88I | CYCGRG | 2 cut(s) | 3559, 4376 |
| Eco91I | GGTNACC | 1 cut(s) | 2494 |
| EcoICRI | GAGCTC | 2 cut(s) | 384, 3431 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1305 |
| EcoO109I | RGGNCCY | 4 cut(s) | 563, 2413, 3087, 4534 |
| EcoO65I | GGTNACC | 1 cut(s) | 2494 |
| EcoRI | GAATTC | 4 cut(s) | 214, 771, 2728, 8078 |
| EcoRII | CCWGG | 6 cut(s) | 3327, 4286, 4315, 4494, 6292, 7345 |
| EcoRV | GATATC | 2 cut(s) | 5328, 6877 |
| EcoT14I | CCWWGG | 7 cut(s) | 1683, 1900, 2346, 2450, 4603, 6654, 7110 |
| EcoT22I | ATGCAT | 6 cut(s) | 457, 792, 2674, 3325, 6124, 6515 |
| EcoT38I | GRGCYC | 5 cut(s) | 386, 566, 3433, 6467, 7658 |
| EgeI | GGCGCC | 1 cut(s) | 7411 |
| EheI | GGCGCC | 1 cut(s) | 7411 |
| ErhI | CCWWGG | 7 cut(s) | 1683, 1900, 2346, 2450, 4603, 6654, 7110 |
| Esp3I | CGTCTC | 2 cut(s) | 331, 420 |
| FaqI | GGGAC | 8 cut(s) | 2426, 2621, 4269, 4752, 5578, 5602, 6151, 7189 |
| FauI | CCCGC | 2 cut(s) | 146, 6954 |
| FauNDI | CATATG | 5 cut(s) | 1018, 3523, 4885, 6118, 6808 |
| FbaI | TGATCA | 1 cut(s) | 1780 |
| FblI | GTMKAC | 7 cut(s) | 273, 1716, 1945, 4896, 5225, 6832, 7001 |
| FriOI | GRGCYC | 5 cut(s) | 386, 566, 3433, 6467, 7658 |
| GlaI | GCGC | 9 cut(s) | 34, 280, 354, 5112, 5722, 5861, 6018, 6818, 7411 |
| GsaI | CCCAGC | 4 cut(s) | 168, 205, 1172, 7841 |
| GsuI | CTGGAG | 8 cut(s) | 284, 350, 400, 2003, 3192, 3699, 7232, 7629 |
| HaeII | RGCGCY | 3 cut(s) | 356, 6820, 7413 |
| HapII | CCGG | 6 cut(s) | 27, 315, 805, 1557, 1619, 4377 |
| HgaI | GACGC | 1 cut(s) | 313 |
| HhaI | GCGC | 9 cut(s) | 35, 281, 355, 5113, 5723, 5862, 6019, 6819, 7412 |
| Hin1I | GRCGYC | 2 cut(s) | 10, 7410 |
| Hin6I | GCGC | 9 cut(s) | 33, 279, 353, 5111, 5721, 5860, 6017, 6817, 7410 |
| HinP1I | GCGC | 9 cut(s) | 33, 279, 353, 5111, 5721, 5860, 6017, 6817, 7410 |
| HincII | GTYRAC | 9 cut(s) | 274, 1066, 1336, 1605, 2470, 4752, 5226, 5413, 5625 |
| HindII | GTYRAC | 9 cut(s) | 274, 1066, 1336, 1605, 2470, 4752, 5226, 5413, 5625 |
| HindIII | AAGCTT | 6 cut(s) | 1187, 1841, 2049, 5283, 7178, 7947 |
| HpaI | GTTAAC | 4 cut(s) | 1066, 1336, 1605, 2470 |
| HpaII | CCGG | 6 cut(s) | 27, 315, 805, 1557, 1619, 4377 |
| HpyCH4IV | ACGT | 7 cut(s) | 10, 898, 2280, 2983, 4093, 5074, 6676 |
| HpySE526I | ACGT | 7 cut(s) | 10, 898, 2280, 2983, 4093, 5074, 6676 |
| Hsp92I | GRCGYC | 2 cut(s) | 10, 7410 |
| HspAI | GCGC | 9 cut(s) | 33, 279, 353, 5111, 5721, 5860, 6017, 6817, 7410 |
| KasI | GGCGCC | 1 cut(s) | 7409 |
| Kpn2I | TCCGGA | 2 cut(s) | 1556, 1618 |
| KroI | GCCGGC | 1 cut(s) | 314 |
| KroNI | GCCGGC | 1 cut(s) | 316 |
| Ksp22I | TGATCA | 1 cut(s) | 1780 |
| KspAI | GTTAAC | 4 cut(s) | 1066, 1336, 1605, 2470 |
| LguI | GCTCTTC | 2 cut(s) | 543, 6807 |
| MaeII | ACGT | 7 cut(s) | 10, 898, 2280, 2983, 4093, 5074, 6676 |
| MfeI | CAATTG | 2 cut(s) | 5058, 6647 |
| MflI | RGATCY | 9 cut(s) | 757, 1510, 1895, 2570, 3188, 3647, 3911, 3946, 4168 |
| MlsI | TGGCCA | 3 cut(s) | 2319, 2951, 6059 |
| MluNI | TGGCCA | 3 cut(s) | 2319, 2951, 6059 |
| Mly113I | GGCGCC | 1 cut(s) | 7410 |
| MmeI | TCCRAC | 9 cut(s) | 279, 3088, 3196, 3607, 4526, 4593, 7271, 7432, 7662 |
| Mox20I | TGGCCA | 3 cut(s) | 2319, 2951, 6059 |
| Mph1103I | ATGCAT | 6 cut(s) | 457, 792, 2674, 3325, 6124, 6515 |
| MreI | CGCCGGCG | 1 cut(s) | 314 |
| MroI | TCCGGA | 2 cut(s) | 1556, 1618 |
| MroNI | GCCGGC | 1 cut(s) | 314 |
| MroXI | GAANNNNTTC | 5 cut(s) | 487, 490, 828, 2117, 8078 |
| MscI | TGGCCA | 3 cut(s) | 2319, 2951, 6059 |
| Msp20I | TGGCCA | 3 cut(s) | 2319, 2951, 6059 |
| MspA1I | CMGCKG | 1 cut(s) | 2786 |
| MspCI | CTTAAG | 3 cut(s) | 833, 6431, 6497 |
| MspI | CCGG | 6 cut(s) | 27, 315, 805, 1557, 1619, 4377 |
| MspR9I | CCNGG | 9 cut(s) | 806, 3329, 4288, 4317, 4377, 4378, 4496, 6294, 7347 |
| MunI | CAATTG | 2 cut(s) | 5058, 6647 |
| Mva1269I | GAATGC | 4 cut(s) | 1162, 2925, 5696, 6515 |
| MvaI | CCWGG | 6 cut(s) | 3329, 4288, 4317, 4496, 6294, 7347 |
| MvnI | CGCG | 2 cut(s) | 279, 5111 |
| NaeI | GCCGGC | 1 cut(s) | 316 |
| NarI | GGCGCC | 1 cut(s) | 7410 |
| NciI | CCSGG | 3 cut(s) | 806, 4377, 4378 |
| NcoI | CCATGG | 2 cut(s) | 2450, 7110 |
| NdeI | CATATG | 5 cut(s) | 1018, 3523, 4885, 6118, 6808 |
| NgoMIV | GCCGGC | 1 cut(s) | 314 |
| NheI | GCTAGC | 1 cut(s) | 1103 |
| NmeAIII | GCCGAG | 2 cut(s) | 308, 3625 |
| NmuCI | GTSAC | 8 cut(s) | 2403, 2494, 3703, 3836, 5050, 5445, 5578, 6733 |
| NsiI | ATGCAT | 6 cut(s) | 457, 792, 2674, 3325, 6124, 6515 |
| NspV | TTCGAA | 3 cut(s) | 481, 6065, 7127 |
| PaeI | GCATGC | 2 cut(s) | 2017, 6972 |
| PagI | TCATGA | 3 cut(s) | 2995, 3918, 6301 |
| PaqCI | CACCTGC | 1 cut(s) | 397 |
| PciI | ACATGT | 3 cut(s) | 2632, 3813, 5546 |
| PciSI | GCTCTTC | 2 cut(s) | 543, 6807 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 218, 279, 3071, 5080, 6686 |
| PctI | GAATGC | 4 cut(s) | 1162, 2925, 5696, 6515 |
| PdiI | GCCGGC | 1 cut(s) | 316 |
| PdmI | GAANNNNTTC | 5 cut(s) | 487, 490, 828, 2117, 8078 |
| Pfl23II | CGTACG | 1 cut(s) | 6677 |
| PflFI | GACNNNGTC | 1 cut(s) | 323 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1520, 4418 |
| PfoI | TCCNGGA | 2 cut(s) | 804, 4494 |
| PluTI | GGCGCC | 1 cut(s) | 7413 |
| Ppu21I | YACGTR | 3 cut(s) | 4094, 5075, 6677 |
| PpuMI | RGGWCCY | 2 cut(s) | 2413, 4534 |
| PscI | ACATGT | 3 cut(s) | 2632, 3813, 5546 |
| PshAI | GACNNNNGTC | 2 cut(s) | 4963, 5961 |
| PshBI | ATTAAT | 4 cut(s) | 1517, 3033, 4457, 6041 |
| PsiI | TTATAA | 4 cut(s) | 630, 3932, 5768, 6932 |
| Psp124BI | GAGCTC | 2 cut(s) | 386, 3433 |
| Psp1406I | AACGTT | 1 cut(s) | 898 |
| Psp5II | RGGWCCY | 2 cut(s) | 2413, 4534 |
| Psp6I | CCWGG | 6 cut(s) | 3327, 4286, 4315, 4494, 6292, 7345 |
| PspEI | GGTNACC | 1 cut(s) | 2494 |
| PspFI | CCCAGC | 4 cut(s) | 164, 201, 1168, 7837 |
| PspGI | CCWGG | 6 cut(s) | 3327, 4286, 4315, 4494, 6292, 7345 |
| PspLI | CGTACG | 1 cut(s) | 6677 |
| PspOMI | GGGCCC | 1 cut(s) | 562 |
| PspPPI | RGGWCCY | 2 cut(s) | 2413, 4534 |
| PstI | CTGCAG | 2 cut(s) | 1455, 2881 |
| PstNI | CAGNNNCTG | 3 cut(s) | 2537, 5778, 7520 |
| PsuI | RGATCY | 9 cut(s) | 757, 1510, 1895, 2570, 3188, 3647, 3911, 3946, 4168 |
| PsyI | GACNNNGTC | 1 cut(s) | 323 |
| PvuII | CAGCTG | 1 cut(s) | 2786 |
| SacI | GAGCTC | 2 cut(s) | 386, 3433 |
| SalI | GTCGAC | 2 cut(s) | 272, 5224 |
| SapI | GCTCTTC | 2 cut(s) | 543, 6807 |
| ScrFI | CCNGG | 9 cut(s) | 806, 3329, 4288, 4317, 4377, 4378, 4496, 6294, 7347 |
| SfcI | CTRYAG | 7 cut(s) | 1451, 1713, 2538, 2877, 5219, 5709, 6359 |
| SfoI | GGCGCC | 1 cut(s) | 7411 |
| SfuI | TTCGAA | 3 cut(s) | 481, 6065, 7127 |
| SgrAI | CRCCGGYG | 1 cut(s) | 314 |
| SinI | GGWCC | 9 cut(s) | 301, 2413, 2438, 4163, 4534, 4673, 5873, 6208, 7203 |
| SmaI | CCCGGG | 1 cut(s) | 4378 |
| SmlI | CTYRAG | 9 cut(s) | 833, 2046, 3482, 4930, 4961, 6130, 6431, 6497, 6857 |
| SmoI | CTYRAG | 9 cut(s) | 833, 2046, 3482, 4930, 4961, 6130, 6431, 6497, 6857 |
| SnaBI | TACGTA | 3 cut(s) | 4094, 5075, 6677 |
| SpeI | ACTAGT | 1 cut(s) | 2614 |
| SphI | GCATGC | 2 cut(s) | 2017, 6972 |
| SspDI | GGCGCC | 1 cut(s) | 7409 |
| SspI | AATATT | 2 cut(s) | 6848, 7757 |
| SstI | GAGCTC | 2 cut(s) | 386, 3433 |
| StyD4I | CCNGG | 9 cut(s) | 804, 3327, 4286, 4315, 4375, 4376, 4494, 6292, 7345 |
| StyI | CCWWGG | 7 cut(s) | 1683, 1900, 2346, 2450, 4603, 6654, 7110 |
| TaiI | ACGT | 7 cut(s) | 13, 901, 2283, 2986, 4096, 5077, 6679 |
| TaqII | GACCGA | 2 cut(s) | 285, 6554 |
| TauI | GCSGC | 5 cut(s) | 33, 55, 314, 7324, 7776 |
| TseFI | GTSAC | 8 cut(s) | 2403, 2494, 3703, 3836, 5050, 5445, 5578, 6733 |
| Tsp45I | GTSAC | 8 cut(s) | 2403, 2494, 3703, 3836, 5050, 5445, 5578, 6733 |
| TspGWI | ACGGA | 4 cut(s) | 21, 928, 4489, 6338 |
| TspMI | CCCGGG | 1 cut(s) | 4376 |
| Tth111I | GACNNNGTC | 1 cut(s) | 323 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1520, 4418 |
| Vha464I | CTTAAG | 3 cut(s) | 833, 6431, 6497 |
| VneI | GTGCAC | 1 cut(s) | 7365 |
| VpaK11BI | GGWCC | 9 cut(s) | 301, 2413, 2438, 4163, 4534, 4673, 5873, 6208, 7203 |
| VspI | ATTAAT | 4 cut(s) | 1517, 3033, 4457, 6041 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1305 |
| XbaI | TCTAGA | 2 cut(s) | 4259, 5965 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 259 |
| XmaI | CCCGGG | 1 cut(s) | 4376 |
| XmiI | GTMKAC | 7 cut(s) | 273, 1716, 1945, 4896, 5225, 6832, 7001 |
| XmnI | GAANNNNTTC | 5 cut(s) | 487, 490, 828, 2117, 8078 |
| ZraI | GACGTC | 1 cut(s) | 11 |
| Zsp2I | ATGCAT | 6 cut(s) | 457, 792, 2674, 3325, 6124, 6515 |