Rh7CG296500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000582
Physical Location & Seq
Forward (+)
30370918 .. 30372987
2070 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG296500.1

Sequence Viewer

Length: 1257 bp
ATGAGTGCTGAGGATATTGTATACTTGAAAGATTCTCTTACAAGGATGGAATGTACTGTGCTTCCTACTGTACAGGATAAGTGGGTATCTCTACATCCTTCCTATGGTCTCCTGTGCTGGTGTGATGATAAGAAGTTGAAGAAGCAGTTTATGCATATGGATGGACTTGATTTTCTTTACTCTGGTGGACTAAGTAATGATGATGAAGAGATCCTAAGTGCAAAAATGTCCGTCCTCATGCGAAACTTAGGGATTCCTGCACTTTCAAAGGTTGTGACTCGTGAGGCGATGTTTAATGGTCCGACAGAATCTAGCTTTAAAGCTGCATTGCTGGATTGGGCTCTGCCATATGCGCAACGCTTCTTACATAGTTTACATCCTGATAAATATTCTCAACTCAAGCAGTCTGGATTCGATATACTAAATCGTTTGCGAGTAGTAGAAGTTAAAAAGCTGTCCTACCGCAATGTTATAAAGATTGCTGGAAGTGAATCCAAGAAGCAAATTGAATGTAGTTGTGTTCTGCAGGCTCAGGCACAATTTGCACAGCTTACCATTGTCTCACAAATTGAAATGGATAGTGATTCTGAAACCCATGTCAGACAAACAGTTGAATCAACTCCCATTTCAGTCGACATTAAATGGACAATTGGTGAGGGTACAGCAACAACATCTGCACCTTTAGTGCTGCCAAACTCCAATGATTTGCAAGAACACTTCGATGATGAGACTGATATGGATACTGATTTCAATCCTAATAATCTAGATTTTGTTGTTGACCCTCGCGTTTTGGGTTCATCTGATTGTAGGAAGGTAGACCATCCTAGATATGGCTCTAGTGGAAGAGATTCAATGCGTGGAAGAGATGCAATGCTTACCGGGAGGTTAGGTGAGGTTGTTGCTTTTAAATACTTAATTGCAAAAGCTGGCAAGTCTGTTGTGAGGTGGGTTAATGAAAGAATTGAAACTGGGCTACCCTATGACATAGTTGTAGGTGAGAAGGAAGATAGTCTAGAGTTCATTGAGGTTAAAGCCACCCAACAACCAAAAAAGGATTGGTTCCACATATCAATGATGGAGTGGCAATTTGCAGCGGAAAAAGGCGAAGCCTTCAGCATTTTGCACGTCCTCTTATTGGGTAATAATGCTGCAAGAGTCTCAGTTTACAAGAATCCTGTAAAATTGTGTCATCTGGGCAAGCTACAGTTGCATCTTTCGATGCCTAGGCAGGAGAAGGAATTATTTCTTGTGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3883

Protein Analysis

418

Amino Acids

47.2

Weight (kDa)

5.82

Isoelectric Point (pI)

37.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOV_C PF13020 297 - 383 1.1e-19 Protein NO VEIN, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08300 AT1G08300 AT1G08300 AT4G13750
fragaria_vesca FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_4g13620 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660
malus_domestica MD04G1012800.v1.1 MD04G1012900.v1.1 MD04G1013100.v1.1 MD04G1013300.v1.1
prunus_persica Prupe.1G159000_v2.0.a1 Prupe.1G159100_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G358100_v2.0.a1
pyrus_communis pycom04g01020 pycom04g01030
rosa_chinensis RchiOBHm_Chr4g0414341 RchiOBHm_Chr4g0414351 RchiOBHm_Chr6g0275261 RchiOBHm_Chr7g0213881 RchiOBHm_Chr7g0213891
rosa_laevigata RLG00000008153 RLG00000008155 RLG00000013477
rosa_multiflora Rmu_co8510163.1_g000001 Rmu_sc0004087.1_g000027 Rmu_sc0005196.1_g000014 Rmu_sc0005558.1_g000005 Rmu_sc0005558.1_g000006 Rmu_sc0008100.1_g000005 Rmu_sc0008560.1_g000005
rosa_roxburghii Rroxscaffold_5G00358210 Rroxscaffold_5G00358220 Rroxscaffold_7G00187920 Rroxscaffold_7G00187930 Rroxscaffold_7G00193450
rosa_rugosa Rorug04G0127100 Rorug04G0127200 Rorug04G0127300 Rorug04G0127400 Rorug06G0090600
rosa_samantha Rh4AG185200 Rh4AG185300 Rh4AG185500 Rh4BG184700 Rh4BG184800 Rh4CG198000 Rh4CG198100 Rh4DG182400 Rh4DG182600 Rh6AG204100 Rh6BG207000 Rh6CG209600 Rh6DG200000 Rh7AG277400 Rh7CG296400 Rh7CG296500
rosa_wichuraiana Rw4G015850 Rw4G015860 Rw6G017730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 473
Acc16I TGCGCA 1 cut(s) 354
AccI GTMKAC 3 cut(s) 21, 633, 816
AccII CGCG 1 cut(s) 786
AciI CCGC 2 cut(s) 463, 1094
AclWI GGATC 1 cut(s) 205
AcuI CTGAAG 1 cut(s) 1096
AfaI GTAC 3 cut(s) 55, 72, 661
AfiI CCNNNNNNNGG 3 cut(s) 104, 830, 1135
AgsI TTSAA 9 cut(s) 28, 139, 267, 509, 572, 614, 751, 852, 965
AjiI CACGTC 1 cut(s) 1126
AluBI AGCT 6 cut(s) 315, 323, 454, 550, 926, 1201
AluI AGCT 6 cut(s) 315, 323, 454, 550, 926, 1201
Alw26I GTCTC 4 cut(s) 113, 565, 722, 1162
AlwI GGATC 1 cut(s) 205
ApeKI GCWGC 4 cut(s) 323, 688, 1091, 1148
Asp700I GAANNNNTTC 2 cut(s) 847, 1242
AspA2I CCTAGG 1 cut(s) 1223
AspLEI GCGC 1 cut(s) 355
AspS9I GGNCC 1 cut(s) 299
AsuC2I CCSGG 1 cut(s) 880
AsuHPI GGTGA 3 cut(s) 665, 902, 1007
AvaII GGWCC 1 cut(s) 299
AvrII CCTAGG 1 cut(s) 1223
BanII GRGCYC 1 cut(s) 343
BauI CACGAG 1 cut(s) 279
BbvCI CCTCAGC 1 cut(s) 9
BbvI GCAGC 4 cut(s) 310, 675, 1103, 1135
BccI CCATC 4 cut(s) 40, 155, 828, 1069
BciVI GTATCC 1 cut(s) 733
BcnI CCSGG 1 cut(s) 880
BcoDI GTCTC 4 cut(s) 113, 565, 722, 1162
BfaI CTAG 6 cut(s) 312, 764, 825, 837, 1013, 1224
BfmI CTRYAG 2 cut(s) 524, 1202
BfuI GTATCC 1 cut(s) 733
BisI GCNGC 4 cut(s) 324, 689, 1092, 1149
BlnI CCTAGG 1 cut(s) 1223
BlsI GCNGC 4 cut(s) 325, 690, 1093, 1150
Bme1390I CCNGG 1 cut(s) 880
Bme18I GGWCC 1 cut(s) 299
BmgBI CACGTC 1 cut(s) 1126
BmgT120I GGNCC 1 cut(s) 299
BmiI GGNNCC 1 cut(s) 1061
BmrFI CCNGG 1 cut(s) 880
BmrI ACTGGG 1 cut(s) 978
BmsI GCATC 3 cut(s) 856, 1209, 1219
BmuI ACTGGG 1 cut(s) 978
Bpu10I CCTNAGC 2 cut(s) 9, 531
BpuEI CTTGAG 1 cut(s) 383
BpuMI CCSGG 1 cut(s) 880
BsaBI GATNNNNATC 1 cut(s) 750
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 1223
BsaXI ACNNNNNCTCC 2 cut(s) 874, 904
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 830, 1135
Bse1I ACTGG 1 cut(s) 973
Bse3DI GCAATG 3 cut(s) 326, 472, 876
Bse8I GATNNNNATC 1 cut(s) 750
BseDI CCNNGG 1 cut(s) 1223
BseGI GGATG 5 cut(s) 51, 94, 166, 376, 820
BseJI GATNNNNATC 1 cut(s) 750
BseLI CCNNNNNNNGG 3 cut(s) 104, 830, 1135
BseMI GCAATG 3 cut(s) 326, 472, 876
BseMII CTCAG 2 cut(s) 545, 1173
BseNI ACTGG 1 cut(s) 973
BseXI GCAGC 4 cut(s) 310, 675, 1103, 1135
BsgI GTGCAG 2 cut(s) 243, 660
Bsh1236I CGCG 1 cut(s) 786
BsiSI CCGG 1 cut(s) 879
BslI CCNNNNNNNGG 3 cut(s) 104, 830, 1135
BsmAI GTCTC 4 cut(s) 113, 565, 722, 1162
Bso31I GGTCTC 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 343
Bsp1407I TGTACA 1 cut(s) 70
Bsp143I GATC 1 cut(s) 210
BspACI CCGC 2 cut(s) 463, 1094
BspCNI CTCAG 2 cut(s) 544, 1172
BspFNI CGCG 1 cut(s) 786
BspLI GGNNCC 1 cut(s) 1061
BspMAI CTGCAG 1 cut(s) 528
BspPI GGATC 1 cut(s) 205
BspTNI GGTCTC 1 cut(s) 113
BsrDI GCAATG 3 cut(s) 326, 472, 876
BsrGI TGTACA 1 cut(s) 70
BsrI ACTGG 1 cut(s) 973
BssECI CCNNGG 1 cut(s) 1223
BssMI GATC 1 cut(s) 210
BssNAI GTATAC 1 cut(s) 22
BssSI CACGAG 1 cut(s) 279
BssT1I CCWWGG 1 cut(s) 1223
Bst1107I GTATAC 1 cut(s) 22
Bst2BI CACGAG 1 cut(s) 279
Bst4CI ACNGT 4 cut(s) 58, 70, 610, 1206
Bst6I CTCTTC 3 cut(s) 201, 838, 856
BstAPI GCANNNNNTGC 2 cut(s) 151, 542
BstAUI TGTACA 1 cut(s) 70
BstC8I GCNNGC 3 cut(s) 528, 928, 1199
BstDEI CTNAG 6 cut(s) 9, 191, 215, 247, 531, 1159
BstF5I GGATG 5 cut(s) 51, 94, 166, 376, 820
BstFNI CGCG 1 cut(s) 786
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 1 cut(s) 213
BstMAI GTCTC 4 cut(s) 113, 565, 722, 1162
BstMBI GATC 1 cut(s) 210
BstMWI GCNNNNNNNGC 4 cut(s) 151, 352, 542, 1207
BstSCI CCNGG 1 cut(s) 878
BstSFI CTRYAG 2 cut(s) 524, 1202
BstUI CGCG 1 cut(s) 786
BstV1I GCAGC 4 cut(s) 310, 675, 1103, 1135
BstX2I RGATCY 1 cut(s) 210
BstYI RGATCY 1 cut(s) 210
BstZ17I GTATAC 1 cut(s) 22
BsuI GTATCC 1 cut(s) 733
BtgZI GCGATG 1 cut(s) 302
BtrI CACGTC 1 cut(s) 1126
BtsCI GGATG 5 cut(s) 51, 94, 166, 376, 820
Cac8I GCNNGC 3 cut(s) 528, 928, 1199
CfoI GCGC 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 299
Csp6I GTAC 3 cut(s) 54, 71, 660
CviAII CATG 2 cut(s) 238, 596
CviQI GTAC 3 cut(s) 54, 71, 660
DdeI CTNAG 6 cut(s) 9, 191, 215, 247, 531, 1159
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
DraI TTTAAA 2 cut(s) 319, 907
Eam1104I CTCTTC 3 cut(s) 201, 838, 856
EarI CTCTTC 3 cut(s) 201, 838, 856
Eco130I CCWWGG 1 cut(s) 1223
Eco24I GRGCYC 1 cut(s) 343
Eco31I GGTCTC 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 1096
EcoT14I CCWWGG 1 cut(s) 1223
EcoT22I ATGCAT 1 cut(s) 156
EcoT38I GRGCYC 1 cut(s) 343
ErhI CCWWGG 1 cut(s) 1223
FaeI CATG 2 cut(s) 241, 599
FalI AAGNNNNNCTT 2 cut(s) 21, 53
FatI CATG 2 cut(s) 237, 595
FauNDI CATATG 2 cut(s) 156, 349
FblI GTMKAC 3 cut(s) 21, 633, 816
Fnu4HI GCNGC 4 cut(s) 324, 689, 1092, 1149
FokI GGATG 5 cut(s) 58, 81, 173, 363, 807
FriOI GRGCYC 1 cut(s) 343
Fsp4HI GCNGC 4 cut(s) 324, 689, 1092, 1149
FspBI CTAG 6 cut(s) 312, 764, 825, 837, 1013, 1224
FspI TGCGCA 1 cut(s) 354
GlaI GCGC 1 cut(s) 354
GluI GCNGC 4 cut(s) 324, 689, 1092, 1149
HapII CCGG 1 cut(s) 879
HhaI GCGC 1 cut(s) 355
Hin1II CATG 2 cut(s) 241, 599
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HincII GTYRAC 2 cut(s) 634, 778
HindII GTYRAC 2 cut(s) 634, 778
HpaII CCGG 1 cut(s) 879
HphI GGTGA 3 cut(s) 665, 902, 1007
Hpy166II GTNNAC 7 cut(s) 22, 188, 374, 634, 778, 817, 1165
Hpy188I TCNGA 4 cut(s) 303, 589, 602, 802
Hpy188III TCNNGA 6 cut(s) 281, 380, 408, 764, 1013, 1254
Hpy8I GTNNAC 7 cut(s) 22, 188, 374, 634, 778, 817, 1165
HpyAV CCTTC 5 cut(s) 108, 805, 994, 1120, 1228
HpyCH4III ACNGT 4 cut(s) 58, 70, 610, 1206
HpyCH4IV ACGT 1 cut(s) 1125
HpyF10VI GCNNNNNNNGC 4 cut(s) 151, 352, 542, 1207
HpyF3I CTNAG 6 cut(s) 9, 191, 215, 247, 531, 1159
HpySE526I ACGT 1 cut(s) 1125
Hsp92II CATG 2 cut(s) 241, 599
HspAI GCGC 1 cut(s) 353
Kzo9I GATC 1 cut(s) 210
Lsp1109I GCAGC 4 cut(s) 310, 675, 1103, 1135
LweI GCATC 3 cut(s) 856, 1209, 1219
MaeI CTAG 6 cut(s) 312, 764, 825, 837, 1013, 1224
MaeII ACGT 1 cut(s) 1125
MaeIII GTNAC 1 cut(s) 274
MalI GATC 1 cut(s) 212
MboI GATC 1 cut(s) 210
MboII GAAGA 5 cut(s) 151, 218, 855, 873, 1016
MfeI CAATTG 1 cut(s) 648
MflI RGATCY 1 cut(s) 210
MhlI GDGCHC 1 cut(s) 343
MluCI AATT 9 cut(s) 504, 539, 567, 648, 915, 960, 1085, 1181, 1238
MlyI GAGTC 2 cut(s) 271, 1164
MmeI TCCRAC 1 cut(s) 326
Mph1103I ATGCAT 1 cut(s) 156
MroXI GAANNNNTTC 2 cut(s) 847, 1242
MseI TTAA 8 cut(s) 294, 318, 447, 639, 906, 914, 951, 1029
MslI CAYNNNNRTG 3 cut(s) 159, 720, 1070
MspA1I CMGCKG 1 cut(s) 1094
MspI CCGG 1 cut(s) 879
MspR9I CCNGG 1 cut(s) 880
MunI CAATTG 1 cut(s) 648
MvnI CGCG 1 cut(s) 786
MwoI GCNNNNNNNGC 4 cut(s) 151, 352, 542, 1207
NciI CCSGG 1 cut(s) 880
NdeI CATATG 2 cut(s) 156, 349
NdeII GATC 1 cut(s) 210
NlaIII CATG 2 cut(s) 241, 599
NlaIV GGNNCC 1 cut(s) 1061
NmuCI GTSAC 1 cut(s) 274
NsbI TGCGCA 1 cut(s) 354
NsiI ATGCAT 1 cut(s) 156
PdmI GAANNNNTTC 2 cut(s) 847, 1242
PfeI GAWTC 9 cut(s) 32, 253, 308, 411, 491, 584, 614, 848, 1171
PkrI GCNGC 4 cut(s) 325, 690, 1093, 1150
PleI GAGTC 2 cut(s) 271, 1163
PpsI GAGTC 2 cut(s) 271, 1163
PsiI TTATAA 1 cut(s) 473
PspN4I GGNNCC 1 cut(s) 1061
PspPI GGNCC 1 cut(s) 299
PstI CTGCAG 1 cut(s) 528
PsuI RGATCY 1 cut(s) 210
RsaI GTAC 3 cut(s) 55, 72, 661
RsaNI GTAC 3 cut(s) 54, 71, 660
RseI CAYNNNNRTG 3 cut(s) 159, 720, 1070
SalI GTCGAC 1 cut(s) 632
SaqAI TTAA 8 cut(s) 294, 318, 447, 639, 906, 914, 951, 1029
SatI GCNGC 4 cut(s) 324, 689, 1092, 1149
Sau3AI GATC 1 cut(s) 210
Sau96I GGNCC 1 cut(s) 299
SchI GAGTC 2 cut(s) 271, 1164
ScrFI CCNGG 1 cut(s) 880
SduI GDGCHC 1 cut(s) 343
SfaNI GCATC 3 cut(s) 856, 1209, 1219
SfcI CTRYAG 2 cut(s) 524, 1202
SinI GGWCC 1 cut(s) 299
SmiMI CAYNNNNRTG 3 cut(s) 159, 720, 1070
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 9 cut(s) 504, 539, 567, 648, 915, 960, 1085, 1181, 1238
SsiI CCGC 2 cut(s) 463, 1094
SspI AATATT 1 cut(s) 389
SspMI CTAG 6 cut(s) 312, 764, 825, 837, 1013, 1224
StyD4I CCNGG 1 cut(s) 878
StyI CCWWGG 1 cut(s) 1223
TaaI ACNGT 4 cut(s) 58, 70, 610, 1206
TaiI ACGT 1 cut(s) 1128
TaqI TCGA 4 cut(s) 414, 633, 720, 1217
TasI AATT 9 cut(s) 504, 539, 567, 648, 915, 960, 1085, 1181, 1238
TatI WGTACW 2 cut(s) 53, 70
TfiI GAWTC 9 cut(s) 32, 253, 308, 411, 491, 584, 614, 848, 1171
Tru1I TTAA 8 cut(s) 294, 318, 447, 639, 906, 914, 951, 1029
Tru9I TTAA 8 cut(s) 294, 318, 447, 639, 906, 914, 951, 1029
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 4 cut(s) 323, 688, 1091, 1148
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 4 cut(s) 219, 786, 969, 1009
TspGWI ACGGA 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 299
XbaI TCTAGA 2 cut(s) 763, 1012
XcmI CCANNNNNNNNNTGG 2 cut(s) 827, 1053
XmaJI CCTAGG 1 cut(s) 1223
XmiI GTMKAC 3 cut(s) 21, 633, 816
XmnI GAANNNNTTC 2 cut(s) 847, 1242
XspI CTAG 6 cut(s) 312, 764, 825, 837, 1013, 1224
Zsp2I ATGCAT 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.