RchiOBHm_Chr7g0213891

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000582
Physical Location & Seq
Forward (+)
31001147 .. 31001535
389 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19141

Sequence Viewer

Length: 186 bp
ATGAGGGAGTGGCAATTTGCAGCGGAAAAAGGCGAAGCCTTCAGCATTTTGCACGTCCTCTTATTGGGTAATAATGCTGCAAGAGTCTCAGTTTACAAGAATCCTGTAAAATTGTGTCATCTGGGCAAGCTACAGTTGCATCTTTCGATGCCTAGGCAGGAGAAGGAATTATTTCTTGTGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3883

Protein Analysis

61

Amino Acids

6.99

Weight (kDa)

9.43

Isoelectric Point (pI)

23.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08300 AT1G08300 AT1G08300 AT4G13750
fragaria_vesca FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_4g13620 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660
malus_domestica MD04G1012800.v1.1 MD04G1012900.v1.1 MD04G1013100.v1.1 MD04G1013300.v1.1
prunus_persica Prupe.1G159000_v2.0.a1 Prupe.1G159100_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G358100_v2.0.a1
pyrus_communis pycom04g01020 pycom04g01030
rosa_chinensis RchiOBHm_Chr4g0414341 RchiOBHm_Chr4g0414351 RchiOBHm_Chr6g0275261 RchiOBHm_Chr7g0213881 RchiOBHm_Chr7g0213891
rosa_laevigata RLG00000008153 RLG00000008155 RLG00000013477
rosa_multiflora Rmu_co8510163.1_g000001 Rmu_sc0004087.1_g000027 Rmu_sc0005196.1_g000014 Rmu_sc0005558.1_g000005 Rmu_sc0005558.1_g000006 Rmu_sc0008100.1_g000005 Rmu_sc0008560.1_g000005
rosa_roxburghii Rroxscaffold_5G00358210 Rroxscaffold_5G00358220 Rroxscaffold_7G00187920 Rroxscaffold_7G00187930 Rroxscaffold_7G00193450
rosa_rugosa Rorug04G0127100 Rorug04G0127200 Rorug04G0127300 Rorug04G0127400 Rorug06G0090600
rosa_samantha Rh4AG185200 Rh4AG185300 Rh4AG185500 Rh4BG184700 Rh4BG184800 Rh4CG198000 Rh4CG198100 Rh4DG182400 Rh4DG182600 Rh6AG204100 Rh6BG207000 Rh6CG209600 Rh6DG200000 Rh7AG277400 Rh7CG296400 Rh7CG296500
rosa_wichuraiana Rw4G015850 Rw4G015860 Rw6G017730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 23
AcuI CTGAAG 1 cut(s) 25
AfiI CCNNNNNNNGG 1 cut(s) 64
AjiI CACGTC 1 cut(s) 55
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
Alw26I GTCTC 1 cut(s) 91
ApeKI GCWGC 2 cut(s) 20, 77
Asp700I GAANNNNTTC 1 cut(s) 171
AspA2I CCTAGG 1 cut(s) 152
AvrII CCTAGG 1 cut(s) 152
BbvI GCAGC 2 cut(s) 32, 64
BcoDI GTCTC 1 cut(s) 91
BfaI CTAG 1 cut(s) 153
BfmI CTRYAG 1 cut(s) 131
BisI GCNGC 2 cut(s) 21, 78
BlnI CCTAGG 1 cut(s) 152
BlsI GCNGC 2 cut(s) 22, 79
BmgBI CACGTC 1 cut(s) 55
BmsI GCATC 2 cut(s) 138, 148
BsaJI CCNNGG 1 cut(s) 152
Bsc4I CCNNNNNNNGG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 152
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 102
BseXI GCAGC 2 cut(s) 32, 64
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 91
BspACI CCGC 1 cut(s) 23
BspCNI CTCAG 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 152
BssT1I CCWWGG 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 91
BstMWI GCNNNNNNNGC 1 cut(s) 136
BstSFI CTRYAG 1 cut(s) 131
BstV1I GCAGC 2 cut(s) 32, 64
BtrI CACGTC 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 128
CviJI RGCY 2 cut(s) 38, 130
CviKI_1 RGCY 2 cut(s) 38, 130
DdeI CTNAG 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 152
Fnu4HI GCNGC 2 cut(s) 21, 78
Fsp4HI GCNGC 2 cut(s) 21, 78
FspBI CTAG 1 cut(s) 153
GluI GCNGC 2 cut(s) 21, 78
HinfI GANTC 2 cut(s) 84, 100
Hpy166II GTNNAC 1 cut(s) 94
Hpy188III TCNNGA 1 cut(s) 183
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 2 cut(s) 49, 157
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 4 cut(s) 20, 52, 80, 139
HpyF10VI GCNNNNNNNGC 1 cut(s) 136
HpyF3I CTNAG 1 cut(s) 88
HpySE526I ACGT 1 cut(s) 54
LpnPI CCDG 3 cut(s) 107, 117, 143
Lsp1109I GCAGC 2 cut(s) 32, 64
LweI GCATC 2 cut(s) 138, 148
MaeI CTAG 1 cut(s) 153
MaeII ACGT 1 cut(s) 54
MluCI AATT 3 cut(s) 14, 110, 167
MlyI GAGTC 1 cut(s) 93
MnlI CCTC 1 cut(s) 68
MroXI GAANNNNTTC 1 cut(s) 171
MspA1I CMGCKG 1 cut(s) 23
MwoI GCNNNNNNNGC 1 cut(s) 136
PdmI GAANNNNTTC 1 cut(s) 171
PfeI GAWTC 1 cut(s) 100
PkrI GCNGC 2 cut(s) 22, 79
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
SatI GCNGC 2 cut(s) 21, 78
SchI GAGTC 1 cut(s) 93
SetI ASST 2 cut(s) 57, 132
SfaNI GCATC 2 cut(s) 138, 148
SfcI CTRYAG 1 cut(s) 131
SgeI CNNG 8 cut(s) 65, 93, 109, 116, 134, 139, 165, 170
Sse9I AATT 3 cut(s) 14, 110, 167
SsiI CCGC 1 cut(s) 23
SspMI CTAG 1 cut(s) 153
StyI CCWWGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 135
TaiI ACGT 1 cut(s) 57
TaqI TCGA 1 cut(s) 146
TasI AATT 3 cut(s) 14, 110, 167
TfiI GAWTC 1 cut(s) 100
TseI GCWGC 2 cut(s) 20, 77
XmaJI CCTAGG 1 cut(s) 152
XmnI GAANNNNTTC 1 cut(s) 171
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.