Prupe.1G358100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000582
Physical Location & Seq
Forward (+)
33139690 .. 33143805
4116 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G358100.1

Sequence Viewer

Length: 816 bp
ATGATATCTCTACTTCCTGAGTTCATGGATACTTGTGAAAATAAAGATATTAGGGTTGAAGAATATTTAGATTTCATTGTTAAGAAGCGATCAGTTGCAAGCAAGGAGGCACTTGGAATACGAATTCACAGCATGGGGATGCATATTTCTGCCATATGGGAAGCCAGGAATCTAGAAATTTCCACTCTAAAGAAATCAGAGAAGGCATTTCAGCCAAATTCAGATAAAAAGGATAGGAAGTTTCCACTTTTATCCGCAGAGAAAAAGGAGCTAGACAAACGTTTCAGCACTATTTCTCAGCGCGTTGAATCGTTTTCCCCCATACATAAGGACTTTTGTGGCAAGCACATTAGATTTGATCCTAAAACTTCAAGCTCAGAGGATGAAGGTAGGGATGATTATTTGTCTGAAGAGAATGATGAAAATAATGACCATGTAACAGGCAGTCAGGTTAACTTCTCATCACAGTCTGTTGAAAGTTCTGACCGAGTACTTGATAGGATGCTGCAGTTTAATAATACTGAAGCTCAGAAGAGACAGAAAATCAAGTCAATGTTTTCTTTGTATCCATTAATTGGATTACTAAATGTTGTTGCAAGTTATTGTGGCTTGAGAAATTTTCCCATGTTTGGTGGGCAAAACAATTTGTGTAGGCAACAATGCATAGTTTCAGAGTTGAAGCTGATGGTGTCTTTTGAGCCAATGGATTTTTCTAGATATCACAAGTGCAATGGAAAATTAACGAATTGGTCTAGACAAAGAGTCAAACATTTTTTCTGTTGGATGCTAGAAATGCCTCATATAATTATTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3883

Protein Analysis

272

Amino Acids

31.53

Weight (kDa)

8.39

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08300 AT1G08300 AT1G08300 AT4G13750
fragaria_vesca FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_4g13620 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660
malus_domestica MD04G1012800.v1.1 MD04G1012900.v1.1 MD04G1013100.v1.1 MD04G1013300.v1.1
prunus_persica Prupe.1G159000_v2.0.a1 Prupe.1G159100_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G358100_v2.0.a1
pyrus_communis pycom04g01020 pycom04g01030
rosa_chinensis RchiOBHm_Chr4g0414341 RchiOBHm_Chr4g0414351 RchiOBHm_Chr6g0275261 RchiOBHm_Chr7g0213881 RchiOBHm_Chr7g0213891
rosa_laevigata RLG00000008153 RLG00000008155 RLG00000013477
rosa_multiflora Rmu_co8510163.1_g000001 Rmu_sc0004087.1_g000027 Rmu_sc0005196.1_g000014 Rmu_sc0005558.1_g000005 Rmu_sc0005558.1_g000006 Rmu_sc0008100.1_g000005 Rmu_sc0008560.1_g000005
rosa_roxburghii Rroxscaffold_5G00358210 Rroxscaffold_5G00358220 Rroxscaffold_7G00187920 Rroxscaffold_7G00187930 Rroxscaffold_7G00193450
rosa_rugosa Rorug04G0127100 Rorug04G0127200 Rorug04G0127300 Rorug04G0127400 Rorug06G0090600
rosa_samantha Rh4AG185200 Rh4AG185300 Rh4AG185500 Rh4BG184700 Rh4BG184800 Rh4CG198000 Rh4CG198100 Rh4DG182400 Rh4DG182600 Rh6AG204100 Rh6BG207000 Rh6CG209600 Rh6DG200000 Rh7AG277400 Rh7CG296400 Rh7CG296500
rosa_wichuraiana Rw4G015850 Rw4G015860 Rw6G017730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 575
AccII CGCG 1 cut(s) 303
AciI CCGC 1 cut(s) 255
AclI AACGTT 1 cut(s) 280
AclWI GGATC 1 cut(s) 353
AcsI RAATTY 4 cut(s) 123, 177, 217, 616
AcuI CTGAAG 2 cut(s) 429, 543
AfaI GTAC 1 cut(s) 492
AfiI CCNNNNNNNGG 2 cut(s) 575, 629
AgsI TTSAA 5 cut(s) 59, 308, 372, 476, 679
AhdI GACNNNNNGTC 1 cut(s) 761
AjnI CCWGG 1 cut(s) 164
AjuI GAANNNNNNNTTGG 2 cut(s) 694, 726
AluBI AGCT 4 cut(s) 271, 375, 527, 682
AluI AGCT 4 cut(s) 271, 375, 527, 682
Alw26I GTCTC 1 cut(s) 529
AlwI GGATC 1 cut(s) 353
ApeKI GCWGC 1 cut(s) 505
ApoI RAATTY 4 cut(s) 123, 177, 217, 616
AseI ATTAAT 1 cut(s) 572
AspLEI GCGC 1 cut(s) 303
BbvI GCAGC 1 cut(s) 492
BccI CCATC 1 cut(s) 679
BciT130I CCWGG 1 cut(s) 166
BciVI GTATCC 2 cut(s) 22, 576
BcoDI GTCTC 1 cut(s) 529
BfaI CTAG 5 cut(s) 173, 272, 714, 753, 788
BfmI CTRYAG 1 cut(s) 506
BfuI GTATCC 2 cut(s) 22, 576
BisI GCNGC 1 cut(s) 506
BlsI GCNGC 1 cut(s) 507
BmcAI AGTACT 1 cut(s) 492
Bme1390I CCNGG 1 cut(s) 166
BmeRI GACNNNNNGTC 1 cut(s) 761
BmrFI CCNGG 1 cut(s) 166
BmsI GCATC 3 cut(s) 129, 492, 774
BpuEI CTTGAG 1 cut(s) 631
Bsc4I CCNNNNNNNGG 2 cut(s) 575, 629
Bse3DI GCAATG 1 cut(s) 736
BseBI CCWGG 1 cut(s) 166
BseGI GGATG 5 cut(s) 144, 388, 400, 507, 789
BseLI CCNNNNNNNGG 2 cut(s) 575, 629
BseMI GCAATG 1 cut(s) 736
BseMII CTCAG 4 cut(s) 9, 311, 390, 542
BseXI GCAGC 1 cut(s) 492
Bsh1236I CGCG 1 cut(s) 303
BslI CCNNNNNNNGG 2 cut(s) 575, 629
BsmAI GTCTC 1 cut(s) 529
Bsp143I GATC 2 cut(s) 89, 358
BspACI CCGC 1 cut(s) 255
BspCNI CTCAG 4 cut(s) 10, 310, 389, 541
BspFNI CGCG 1 cut(s) 303
BspMAI CTGCAG 1 cut(s) 510
BspPI GGATC 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 736
BssMI GATC 2 cut(s) 89, 358
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 468
Bst6I CTCTTC 2 cut(s) 405, 527
BstC8I GCNNGC 2 cut(s) 100, 344
BstDEI CTNAG 4 cut(s) 18, 297, 376, 528
BstF5I GGATG 5 cut(s) 144, 388, 400, 507, 789
BstFNI CGCG 1 cut(s) 303
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 2 cut(s) 92, 361
BstMAI GTCTC 1 cut(s) 529
BstMBI GATC 2 cut(s) 89, 358
BstMWI GCNNNNNNNGC 1 cut(s) 793
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 164
BstSFI CTRYAG 1 cut(s) 506
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 492
BsuI GTATCC 2 cut(s) 22, 576
BtsCI GGATG 5 cut(s) 144, 388, 400, 507, 789
Cac8I GCNNGC 2 cut(s) 100, 344
CfoI GCGC 1 cut(s) 303
Csp6I GTAC 1 cut(s) 491
CviAII CATG 4 cut(s) 25, 133, 434, 625
CviJI RGCY 9 cut(s) 164, 214, 271, 375, 527, 609, 682, 700, 813
CviKI_1 RGCY 9 cut(s) 164, 214, 271, 375, 527, 609, 682, 700, 813
CviQI GTAC 1 cut(s) 491
DdeI CTNAG 4 cut(s) 18, 297, 376, 528
DpnI GATC 2 cut(s) 91, 360
DpnII GATC 2 cut(s) 89, 358
DriI GACNNNNNGTC 1 cut(s) 761
Eam1104I CTCTTC 2 cut(s) 405, 527
Eam1105I GACNNNNNGTC 1 cut(s) 761
EarI CTCTTC 2 cut(s) 405, 527
Eco32I GATATC 2 cut(s) 6, 719
Eco57I CTGAAG 2 cut(s) 429, 543
EcoRI GAATTC 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 164
EcoRV GATATC 2 cut(s) 6, 719
EcoT22I ATGCAT 2 cut(s) 144, 665
FaeI CATG 4 cut(s) 28, 136, 437, 628
FatI CATG 4 cut(s) 24, 132, 433, 624
FauNDI CATATG 1 cut(s) 155
Fnu4HI GCNGC 1 cut(s) 506
FokI GGATG 5 cut(s) 151, 395, 407, 514, 796
Fsp4HI GCNGC 1 cut(s) 506
FspBI CTAG 5 cut(s) 173, 272, 714, 753, 788
GlaI GCGC 1 cut(s) 302
GluI GCNGC 1 cut(s) 506
HhaI GCGC 1 cut(s) 303
Hin1II CATG 4 cut(s) 28, 136, 437, 628
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HinfI GANTC 3 cut(s) 169, 308, 762
HpaI GTTAAC 1 cut(s) 454
Hpy166II GTNNAC 1 cut(s) 454
Hpy188I TCNGA 7 cut(s) 199, 223, 379, 409, 484, 531, 673
Hpy188III TCNNGA 4 cut(s) 17, 173, 714, 753
Hpy8I GTNNAC 1 cut(s) 454
HpyAV CCTTC 2 cut(s) 196, 380
HpyCH4III ACNGT 1 cut(s) 468
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 6 cut(s) 98, 142, 508, 596, 663, 729
HpyF10VI GCNNNNNNNGC 1 cut(s) 793
HpyF3I CTNAG 4 cut(s) 18, 297, 376, 528
HpySE526I ACGT 1 cut(s) 280
Hsp92II CATG 4 cut(s) 28, 136, 437, 628
HspAI GCGC 1 cut(s) 301
KspAI GTTAAC 1 cut(s) 454
Kzo9I GATC 2 cut(s) 89, 358
LmnI GCTCC 1 cut(s) 268
LpnPI CCDG 5 cut(s) 30, 151, 178, 426, 434
Lsp1109I GCAGC 1 cut(s) 492
LweI GCATC 3 cut(s) 129, 492, 774
MaeI CTAG 5 cut(s) 173, 272, 714, 753, 788
MaeII ACGT 1 cut(s) 280
MaeIII GTNAC 1 cut(s) 436
MalI GATC 2 cut(s) 91, 360
MboI GATC 2 cut(s) 89, 358
MboII GAAGA 3 cut(s) 71, 422, 544
MluCI AATT 9 cut(s) 123, 177, 217, 573, 616, 643, 737, 745, 804
MlyI GAGTC 1 cut(s) 771
MmeI TCCRAC 1 cut(s) 761
MnlI CCTC 3 cut(s) 100, 373, 807
Mph1103I ATGCAT 2 cut(s) 144, 665
MseI TTAA 5 cut(s) 81, 453, 513, 572, 740
MslI CAYNNNNRTG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 166
MvaI CCWGG 1 cut(s) 166
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 1 cut(s) 793
NdeI CATATG 1 cut(s) 155
NdeII GATC 2 cut(s) 89, 358
NlaIII CATG 4 cut(s) 28, 136, 437, 628
NsiI ATGCAT 2 cut(s) 144, 665
PfeI GAWTC 2 cut(s) 169, 308
PflMI CCANNNNNTGG 1 cut(s) 575
PkrI GCNGC 1 cut(s) 507
PleI GAGTC 1 cut(s) 770
PpsI GAGTC 1 cut(s) 770
PshBI ATTAAT 1 cut(s) 572
Psp1406I AACGTT 1 cut(s) 280
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PstI CTGCAG 1 cut(s) 510
RsaI GTAC 1 cut(s) 492
RsaNI GTAC 1 cut(s) 491
RseI CAYNNNNRTG 1 cut(s) 137
SaqAI TTAA 5 cut(s) 81, 453, 513, 572, 740
SatI GCNGC 1 cut(s) 506
Sau3AI GATC 2 cut(s) 89, 358
ScaI AGTACT 1 cut(s) 492
SchI GAGTC 1 cut(s) 771
ScrFI CCNGG 1 cut(s) 166
SetI ASST 7 cut(s) 273, 283, 377, 391, 453, 529, 684
SfaNI GCATC 3 cut(s) 129, 492, 774
SfcI CTRYAG 1 cut(s) 506
SmiMI CAYNNNNRTG 1 cut(s) 137
SmlI CTYRAG 1 cut(s) 610
SmoI CTYRAG 1 cut(s) 610
Sse9I AATT 9 cut(s) 123, 177, 217, 573, 616, 643, 737, 745, 804
SsiI CCGC 1 cut(s) 255
SspI AATATT 1 cut(s) 65
SspMI CTAG 5 cut(s) 173, 272, 714, 753, 788
StyD4I CCNGG 1 cut(s) 164
TaaI ACNGT 1 cut(s) 468
TaiI ACGT 1 cut(s) 283
TaqII GACCGA 1 cut(s) 501
TasI AATT 9 cut(s) 123, 177, 217, 573, 616, 643, 737, 745, 804
TatI WGTACW 1 cut(s) 490
TfiI GAWTC 2 cut(s) 169, 308
Tru1I TTAA 5 cut(s) 81, 453, 513, 572, 740
Tru9I TTAA 5 cut(s) 81, 453, 513, 572, 740
TseI GCWGC 1 cut(s) 505
TspDTI ATGAA 4 cut(s) 13, 64, 399, 435
Van91I CCANNNNNTGG 1 cut(s) 575
VspI ATTAAT 1 cut(s) 572
XapI RAATTY 4 cut(s) 123, 177, 217, 616
XbaI TCTAGA 3 cut(s) 172, 713, 752
XspI CTAG 5 cut(s) 173, 272, 714, 753, 788
ZrmI AGTACT 1 cut(s) 492
Zsp2I ATGCAT 2 cut(s) 144, 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.