Rmu_sc0005196.1_g000014

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005196.1
OG0000582
Physical Location & Seq
Forward (+)
74209 .. 74736
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005196.1_g000014.1.cds

Sequence Viewer

Length: 528 bp
atgaacgtccctccgtttatctcctccggcggcccatggagtcagccaccgccgccgccacttgccctaaaccccaatttctccctccaaaaccccctcaatctatacatgtacctttcaaacctcgcctccttcacaccccactactatccacctttccctcccaataatttcccaatccaaaaccctagcttcgcccccaagcacttctccaattcagcatttcatcctcaggctcaggcctcgtcccagaactcgaaagagcagctggagagaatcgaccgcgccgtggagaaggctcgctccggccttattgccgcgggggaaggcgtctcggcgtggaaggtctcgcagtctgcgattcggattctggaggttgattgctggagctccctagggtttcaaatgcagcaggtgccatctctgcaccgcctcatgctcactcaaggcaaggtaatgtcacatccattttcaattttttttttctttaatcattttggtaagtgcttatattctgttggaatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3883

Protein Analysis

175

Amino Acids

19.54

Weight (kDa)

9.26

Isoelectric Point (pI)

51.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08300 AT1G08300 AT1G08300 AT4G13750
fragaria_vesca FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_4g13620 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660
malus_domestica MD04G1012800.v1.1 MD04G1012900.v1.1 MD04G1013100.v1.1 MD04G1013300.v1.1
prunus_persica Prupe.1G159000_v2.0.a1 Prupe.1G159100_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G358100_v2.0.a1
pyrus_communis pycom04g01020 pycom04g01030
rosa_chinensis RchiOBHm_Chr4g0414341 RchiOBHm_Chr4g0414351 RchiOBHm_Chr6g0275261 RchiOBHm_Chr7g0213881 RchiOBHm_Chr7g0213891
rosa_laevigata RLG00000008153 RLG00000008155 RLG00000013477
rosa_multiflora Rmu_co8510163.1_g000001 Rmu_sc0004087.1_g000027 Rmu_sc0005196.1_g000014 Rmu_sc0005558.1_g000005 Rmu_sc0005558.1_g000006 Rmu_sc0008100.1_g000005 Rmu_sc0008560.1_g000005
rosa_roxburghii Rroxscaffold_5G00358210 Rroxscaffold_5G00358220 Rroxscaffold_7G00187920 Rroxscaffold_7G00187930 Rroxscaffold_7G00193450
rosa_rugosa Rorug04G0127100 Rorug04G0127200 Rorug04G0127300 Rorug04G0127400 Rorug06G0090600
rosa_samantha Rh4AG185200 Rh4AG185300 Rh4AG185500 Rh4BG184700 Rh4BG184800 Rh4CG198000 Rh4CG198100 Rh4DG182400 Rh4DG182600 Rh6AG204100 Rh6BG207000 Rh6CG209600 Rh6DG200000 Rh7AG277400 Rh7CG296400 Rh7CG296500
rosa_wichuraiana Rw4G015850 Rw4G015860 Rw6G017730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 403
Acc36I ACCTGC 1 cut(s) 403
AccB1I GGYRCC 1 cut(s) 415
AccII CGCG 2 cut(s) 285, 320
AciI CCGC 8 cut(s) 30, 50, 53, 56, 283, 318, 320, 430
AcsI RAATTY 1 cut(s) 522
AcyI GRCGYC 1 cut(s) 330
AfaI GTAC 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 289
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 3 cut(s) 120, 404, 474
AluBI AGCT 3 cut(s) 192, 268, 390
AluI AGCT 3 cut(s) 192, 268, 390
Alw21I GWGCWC 1 cut(s) 392
Alw26I GTCTC 2 cut(s) 337, 352
AoxI GGCC 3 cut(s) 31, 240, 307
ApeKI GCWGC 2 cut(s) 265, 409
ApoI RAATTY 1 cut(s) 522
AspA2I CCTAGG 1 cut(s) 394
AspLEI GCGC 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 32
AvrII CCTAGG 1 cut(s) 394
AxyI CCTNAGG 1 cut(s) 231
BanI GGYRCC 1 cut(s) 415
BanII GRGCYC 1 cut(s) 392
Bbv12I GWGCWC 1 cut(s) 392
BbvI GCAGC 2 cut(s) 277, 421
BccI CCATC 1 cut(s) 427
BceAI ACGGC 1 cut(s) 272
BcoDI GTCTC 2 cut(s) 337, 352
BfaI CTAG 2 cut(s) 189, 395
BfuAI ACCTGC 1 cut(s) 403
BisI GCNGC 6 cut(s) 31, 53, 56, 266, 318, 410
BlnI CCTAGG 1 cut(s) 394
BlsI GCNGC 6 cut(s) 32, 54, 57, 267, 319, 411
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 417
BpmI CTGGAG 3 cut(s) 290, 392, 406
Bpu10I CCTNAGC 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 429
BsaHI GRCGYC 1 cut(s) 330
BsaI GGTCTC 1 cut(s) 352
BsaJI CCNNGG 4 cut(s) 35, 288, 318, 394
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 1 cut(s) 289
Bse21I CCTNAGG 1 cut(s) 231
BseDI CCNNGG 4 cut(s) 35, 288, 318, 394
BseGI GGATG 2 cut(s) 226, 463
BseLI CCNNNNNNNGG 1 cut(s) 289
BseMII CTCAG 2 cut(s) 245, 251
BseRI GAGGAG 1 cut(s) 13
BseXI GCAGC 2 cut(s) 277, 421
BsgI GTGCAG 1 cut(s) 410
Bsh1236I CGCG 2 cut(s) 285, 320
Bsh1285I CGRYCG 1 cut(s) 283
BshFI GGCC 3 cut(s) 33, 242, 309
BshNI GGYRCC 1 cut(s) 415
BsiEI CGRYCG 1 cut(s) 283
BsiHKAI GWGCWC 1 cut(s) 392
BsiSI CCGG 2 cut(s) 27, 306
BslFI GGGAC 1 cut(s) 232
BslI CCNNNNNNNGG 1 cut(s) 289
BsmAI GTCTC 2 cut(s) 337, 352
BsmBI CGTCTC 1 cut(s) 337
BsmFI GGGAC 1 cut(s) 232
BsnI GGCC 3 cut(s) 33, 242, 309
Bso31I GGTCTC 1 cut(s) 352
Bsp1286I GDGCHC 1 cut(s) 392
Bsp19I CCATGG 1 cut(s) 35
BspACI CCGC 8 cut(s) 30, 50, 53, 56, 283, 318, 320, 430
BspANI GGCC 3 cut(s) 33, 242, 309
BspCNI CTCAG 2 cut(s) 244, 250
BspFNI CGCG 2 cut(s) 285, 320
BspLI GGNNCC 1 cut(s) 417
BspMI ACCTGC 1 cut(s) 403
BspT107I GGYRCC 1 cut(s) 415
BspTNI GGTCTC 1 cut(s) 352
BssECI CCNNGG 4 cut(s) 35, 288, 318, 394
BssNI GRCGYC 1 cut(s) 330
BssT1I CCWWGG 2 cut(s) 35, 394
BstACI GRCGYC 1 cut(s) 330
BstAPI GCANNNNNTGC 1 cut(s) 415
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 2 cut(s) 231, 237
BstDSI CCRYGG 3 cut(s) 35, 288, 318
BstF5I GGATG 2 cut(s) 226, 463
BstFNI CGCG 2 cut(s) 285, 320
BstHHI GCGC 1 cut(s) 287
BstMAI GTCTC 2 cut(s) 337, 352
BstMCI CGRYCG 1 cut(s) 283
BstMWI GCNNNNNNNGC 3 cut(s) 52, 415, 424
BstNSI RCATGY 1 cut(s) 112
BstUI CGCG 2 cut(s) 285, 320
BstV1I GCAGC 2 cut(s) 277, 421
Bsu36I CCTNAGG 1 cut(s) 231
BsuRI GGCC 3 cut(s) 33, 242, 309
BtgI CCRYGG 3 cut(s) 35, 288, 318
BtsCI GGATG 2 cut(s) 226, 463
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 1 cut(s) 301
CfoI GCGC 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 32
Cfr42I CCGCGG 1 cut(s) 321
CseI GACGC 1 cut(s) 319
Csp6I GTAC 1 cut(s) 112
CviAII CATG 3 cut(s) 36, 109, 436
CviJI RGCY 9 cut(s) 33, 46, 192, 236, 242, 268, 299, 309, 390
CviKI_1 RGCY 9 cut(s) 33, 46, 192, 236, 242, 268, 299, 309, 390
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 2 cut(s) 231, 237
Ecl136II GAGCTC 1 cut(s) 390
Eco130I CCWWGG 2 cut(s) 35, 394
Eco147I AGGCCT 1 cut(s) 242
Eco24I GRGCYC 1 cut(s) 392
Eco31I GGTCTC 1 cut(s) 352
Eco53kI GAGCTC 1 cut(s) 390
Eco81I CCTNAGG 1 cut(s) 231
EcoICRI GAGCTC 1 cut(s) 390
EcoT14I CCWWGG 2 cut(s) 35, 394
EcoT38I GRGCYC 1 cut(s) 392
ErhI CCWWGG 2 cut(s) 35, 394
Esp3I CGTCTC 1 cut(s) 337
FaeI CATG 3 cut(s) 39, 112, 439
FaiI YATR 5 cut(s) 37, 106, 110, 437, 511
FaqI GGGAC 1 cut(s) 232
FatI CATG 3 cut(s) 35, 108, 435
FauI CCCGC 1 cut(s) 313
Fnu4HI GCNGC 6 cut(s) 31, 53, 56, 266, 318, 410
FokI GGATG 2 cut(s) 213, 450
FriOI GRGCYC 1 cut(s) 392
Fsp4HI GCNGC 6 cut(s) 31, 53, 56, 266, 318, 410
FspBI CTAG 2 cut(s) 189, 395
GlaI GCGC 1 cut(s) 286
GluI GCNGC 6 cut(s) 31, 53, 56, 266, 318, 410
GsuI CTGGAG 3 cut(s) 290, 392, 406
HaeIII GGCC 3 cut(s) 33, 242, 309
HapII CCGG 2 cut(s) 27, 306
HgaI GACGC 1 cut(s) 319
HhaI GCGC 1 cut(s) 287
Hin1I GRCGYC 1 cut(s) 330
Hin1II CATG 3 cut(s) 39, 112, 439
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HinfI GANTC 4 cut(s) 40, 276, 361, 367
HpaII CCGG 2 cut(s) 27, 306
Hpy188I TCNGA 1 cut(s) 366
Hpy188III TCNNGA 1 cut(s) 371
HpyAV CCTTC 4 cut(s) 142, 289, 320, 337
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 2 cut(s) 409, 427
HpyF10VI GCNNNNNNNGC 3 cut(s) 52, 415, 424
HpyF3I CTNAG 2 cut(s) 231, 237
HpySE526I ACGT 1 cut(s) 6
Hsp92I GRCGYC 1 cut(s) 330
Hsp92II CATG 3 cut(s) 39, 112, 439
HspAI GCGC 1 cut(s) 285
KspI CCGCGG 1 cut(s) 321
LmnI GCTCC 3 cut(s) 308, 387, 395
LpnPI CCDG 9 cut(s) 40, 218, 224, 254, 263, 319, 356, 370, 398
Lsp1109I GCAGC 2 cut(s) 277, 421
MaeI CTAG 2 cut(s) 189, 395
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 1 cut(s) 459
MhlI GDGCHC 1 cut(s) 392
MluCI AATT 5 cut(s) 76, 169, 214, 474, 522
MlyI GAGTC 1 cut(s) 49
MmeI TCCRAC 1 cut(s) 499
MseI TTAA 1 cut(s) 489
MspA1I CMGCKG 2 cut(s) 268, 320
MspI CCGG 2 cut(s) 27, 306
MvnI CGCG 2 cut(s) 285, 320
MwoI GCNNNNNNNGC 3 cut(s) 52, 415, 424
NcoI CCATGG 1 cut(s) 35
NlaIII CATG 3 cut(s) 39, 112, 439
NlaIV GGNNCC 1 cut(s) 417
NmeAIII GCCGAG 1 cut(s) 314
NmuCI GTSAC 1 cut(s) 459
NspI RCATGY 1 cut(s) 112
PaqCI CACCTGC 1 cut(s) 403
PceI AGGCCT 1 cut(s) 242
PciI ACATGT 1 cut(s) 108
PcsI WCGNNNNNNNCGW 2 cut(s) 285, 356
PfeI GAWTC 3 cut(s) 276, 361, 367
PkrI GCNGC 6 cut(s) 32, 54, 57, 267, 319, 411
PleI GAGTC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 48
PscI ACATGT 1 cut(s) 108
Psp124BI GAGCTC 1 cut(s) 392
PspN4I GGNNCC 1 cut(s) 417
PspPI GGNCC 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 268
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SacI GAGCTC 1 cut(s) 392
SacII CCGCGG 1 cut(s) 321
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 6 cut(s) 31, 53, 56, 266, 318, 410
Sau96I GGNCC 1 cut(s) 32
SchI GAGTC 1 cut(s) 49
SduI GDGCHC 1 cut(s) 392
Sfr303I CCGCGG 1 cut(s) 321
SgrBI CCGCGG 1 cut(s) 321
SmlI CTYRAG 1 cut(s) 444
SmoI CTYRAG 1 cut(s) 444
Sse9I AATT 5 cut(s) 76, 169, 214, 474, 522
SseBI AGGCCT 1 cut(s) 242
SsiI CCGC 8 cut(s) 30, 50, 53, 56, 283, 318, 320, 430
SspMI CTAG 2 cut(s) 189, 395
SstI GAGCTC 1 cut(s) 392
StuI AGGCCT 1 cut(s) 242
StyI CCWWGG 2 cut(s) 35, 394
TaiI ACGT 1 cut(s) 9
TaqI TCGA 2 cut(s) 257, 279
TasI AATT 5 cut(s) 76, 169, 214, 474, 522
TauI GCSGC 4 cut(s) 33, 55, 58, 320
TfiI GAWTC 3 cut(s) 276, 361, 367
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TseFI GTSAC 1 cut(s) 459
TseI GCWGC 2 cut(s) 265, 409
Tsp45I GTSAC 1 cut(s) 459
TspDTI ATGAA 2 cut(s) 17, 215
XapI RAATTY 1 cut(s) 522
XceI RCATGY 1 cut(s) 112
XmaJI CCTAGG 1 cut(s) 394
XspI CTAG 2 cut(s) 189, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.