FvH4_4g13660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000582
Physical Location & Seq
Forward (+)
17206761 .. 17225321
18561 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13660.t5

Sequence Viewer

Length: 8514 bp
ATGTCCGGCTACCCTCACAACTACTTCCGCCCCTCCGCCGGAGATTTCAACTGGGGCCAACCTCCTCCTCCTCACCTCCCCCACCCTCAATTTCTCCACCCCAATCAAAACCCCTCCACCACCTACCCCTCTCAACCTCCCACCTTCCCACCACCGCAACCGCAAAACCCTAATCTCTTCCTCCAAAACCTCAACACCTTTCTCAACACCTATGGCCACACCAATTTCTACCCCGCCCCAACCTCCAATTTCCCTCTCCCAAACCCTAACCCCGCCCCCCACTCCACTCCACCCTTCCGCCCTCCGAGCCTCCCCCCTAACCCTAACGAGACGCTGCCATCGCCGGAGCCTTCAAGTTCGGGTTTTCGGGCCGAGGACCCGAGGGAGGTGCTCCGGAAGATCGACCGTGCGGCGGAGATGATTCGCGACGAGGTTGTCGCCGCCGGGAGGTCCGTCTCGTCGTGGAAGGTGTTGCAGACTGCGCTTCTGAGGGCCAATGTTGACGCCGAGACTTGTTTGGGGGTTAGAATTGAGCAACTGCCGTCTCTCCACCGCCTCATGGTCACTGAAGGAAGGATAAATGCCTTTATCCATTGCTTTGTCAAGGTTCGGAAAATTATATCTTTGTATGATTTGGAAGTTGCGATATGCAAGAATGAGGATATTGAGCATTTTGAAGAGCTTGGATTGGGTCCTTTGTTGCGACACCCACTAGTTTTGCATTATTTCTCCGTGGATTCTGAAACAACTGAAGTCTTTAAGATCTCTACTGAGGATATAGTACGTTTACTCAGTATGTACCTAAAGAAGCCGAAAATTAAGGAACATTCTGTAGAGGGGTTCTTGGATTTTATTGCTAAGAAGCGATCTGTTACAGGCAAGGAAAAGCTAGGAATTCGAATTTTTAGTTTGGGGGTGCATTATTCTGCTATGCGTGAAGCCAATGCTTCAGAACATGCAGCTGTATGTAAATCCTTACAGGAATTGAAACCAAAGAAAACCAAAAGATCTAGGATGAGGTTACCATTATTCTCCTTGCTGAAAAAGCGGCTAGATAAAGAATTTCATGCCATCTCACAGCAATCTGAATTCTGTTCTGTTGTACAAAAGAATAGAGAGGAAGACACACCTGTTTCTTCAAGATCAGAGGATGAAGGTATTAATGATTGTTTACGTGATGACAAAGGTAATGACCATGGTACTGGCGGTCATATTGACTCATTCAAATCCCTGGAAAGTTCTGACAGAGTGCGTAAGTGTGGTTACTTGTCCAAAGTGGAAGAGAGGTCTTGGCTCTTGTCAAACAACCCTTCTCCAAGCCTAAAGCTTAATGAGAGTAACGAGTCAGTCAAAAAGAAAAGAAAATACAAAAGCCTAAGCTGCCCCATCTCTGTTCCCGCAAAGTTGTGCAAGAGAGAGAAGGTAGAGCAAGATGCTCTTCCTACAGAGAGTGACAGTGAAACTACGGTGGTCAGCGACATGCTTAAACTTGATCTTGCAATTGCCAATAATCCTTTGAAGATGTTCATTAAAACATGGAAGGAGGCATGTAGGGAGCAGCCTGTTGCTGAGGTACTTTGGACCATGCTTCGCTCTTATCATACAAAGTATAAGAGGACAGCGAAACTCATGAAAATGTTTTCTACATACCCTTTGCTTGGATTGCTCAATGTTGCCGTCTTATCTATCAAATGTGGAATGTGGGATAGTATGTATGATATGTCCGAAACCATGGGTACACATGAGTTACCTAACACTGTAAGAAGTATAAAGAATGCATCACCAGTCAACACTGAACATGCTACCGAACATGGACAGACGTCTTGCAGCCTGAAGCAGGATCGTCAGTGTAGTCGAAAAGCTACTGGTGAGCCAGTCCAGCGGAAGATTCAAAGGAAGATCCAAAAGAGTCGGAAGAAGTCGGGGTTTGAAGAAGTTAAAATCTGCTACCTTTGTAATCAAGAGGGACACATCAAGAGAAGTTGCCCTCTACAGCAGCAAACTAAAAAATCATCTTTTGGACCTCAGAGTCATCATCAATTGGCTCAGCATTCTGCTAAACCCGACACATCTATCCAACAACTTTCAGGTCAGCCACAGCAGAGCAAGGGTAGAATGTCAATGCCCCAAAACCATGGACATGGAATTTCTGGATTAGAGGTAGAGGAGAAAGTCAGTGCTGTGGTTGACGTTAAAGAGATAATCAGGAAAGTTGCTACATATTTTGAGAATGATCGCGGAATGTCCAGCAATGGTGAATCACTTCAGGAGAAGATATTTATTTACTTCAGAAAGCTTTGTAATTGTGAACTCTGGTTGACTGAGGAATTTTCTGTCATGGAATTTAGATCCCTTGGCTATGGGGACTTTATGATCTTCTTAGAAAAATATGCCCGTCTTCTGCCACAGGAGATGTTCAAGTTCTTGATTGATGACAGCAGTGGAAAGTTTCCTGTGCAGGTTCGCATGCTTCCGCATTATTTAGTTGTTATGGTATCTCAAGCTTTAAACAGTTTATGGGAGGATCAAAAGATTACCACACTAAATATTTCTTCTCTGCTTGGGAAGCAGTTCCCGTCCCTTAGTTTCCAAACCATTGAAAGTGGGTCAGTAGAAGACATCAAAAGTATATTGGGAAATCATAAAGACGCCACAATTTCGAAAGGTGTACTATTTTCAATGACATTAAGTGGAACTAGTTACACTCTAGAATCATTGGAAAACTGTCGTCAGAATGCTGTATTGAATAGCAGCTCGGTGAGTGTTAATCAATCTGTTGCATCCAAGGAGGCAATTGCAGTCCTACTTCGGGCACCAATGATGTCAGATTTGAATTTATGGTCTCATTGGGACATCTTATTTGCTCCCTCTCTTGGGCCTCTTGTACCATGGTTATTAAATGAAGTCAACACAGGTGACTTACTCTGTTTGGTGACCAAAGATGGCAAAGTTATTCGGTTAGATCATTCAGCTACTGTAGACTCATTCTCGAAAGCTGCACTTAAAGGATCCTCTTTCCAAACAGCATTGGAATTTTTATCCCTCGTTTCACTGGTTGGGGGAGAAAAACATGTCCCTGTGTCCCTTTTGAAATTCCATGTACAGCGTGCATTTGAAGTTATTTTCAAGACTTATGTAGATGGTATGGATACATGTGACAAGAAGAGTTCTCTTAATCAAGGAAAAGTTTACTGTGGACAGAAGATGGTTGTTGATAGTGTTACTGGTAAATGTAGTAACTTGCACAGAGATGTAACGCAGATGAAAATTGCTGAGTCTGTAATATCACATTTTTTTCTTGATTGCCTGGGGTATCTACCTGCAGAGTTTCGTAGTTTTGCTGCTGATGTGTTATTTTCTGGGATGAGGTCTGTTTTTAAGCAGGCAGCTTCAGCCATTTTGGATGAAAGCAACCAAATAGAGCAGCGTCTTATACTTCATGAAGTTGGCCTATCTCTTGGTATAGTGGAGTGGATTAGTGATTACCATGTATTCAGTTCCTTAGATACTACTGAACTGTTCATGTCTGTGGCTTGTGGTCTCAATAGCGATGACATGGGGTCTGGCTCACAATATATGCAAAATGTGTCAAAGAAGTTTGCTGCTTCTGAACAGAGTATGGCTGCATCTGTTAGGGCAGATGAGCATAAAGGAGGATGTGCTGATGTTAGCGTGATGGTTGATGGTGGAGGAGTTTCTGAGGCTGAAATTGGCAGTGGTTACAGACAACATCCTACTGATATTAATAAAAATAAAGATGCTTTCCAGGTTATTGAGTCGATCAGGAGAGATGAATTCGGTTTGGGTTCAAGCCTATTGAACTTTGAAAGTATTGTCTTAAAGAAACAGCATGCTCGCTTAGGGAGAGCTCTGCACTGTCTTTCACAGGAATTATATTCTCAAGATTCTCATTTTCTTCTTGAGCTGGTTCAAAATGCTGATGATAATACTTATCCAACAAGTGTGGAGCCAACTCTAGCATTCATTCTTCAAGAGTCGGGTATTGTTGTTTTGAATAATGAACAAGGCTTCTCTGCCCAGAACATAAGAGCACTTTGTGATGTTGGAAATTCAACCAAGAAAGGATCCAATGTTGGATATATAGGGCAAAAGGGCATTGGTTTCAAATCAGTATTTCGTGTCACAGATGCTCCAGAAATTCATTCTAATGGATTTCATATCAAGTTTGATACAAGTGAGGGTCAGATCGGTTTAATTTTGCCCACAGTTATACCTCCTTGCAATCTTGAGTTGTTTAGACAGCTTACATCTAGTGACATTGATAAACCAGATTGTGACAACTGGAACACTTGTATTGTTCTTCCCTTCAGATCGAAGGTATCAGATGGAACTGTCATGAACCACATAATGGATATGTTTTCAGATCTTCATCCATCCTTACTACTATTTCTTCACTGCCTGAAGTGTATCAGGTTTAGAAACCTAATCGATGATTCGCTTACTGTCATGAGAAAAGAAATTGTAGGAGATGGTATTGTTAAGGTTTCACATGGGAATAAGAAGATGACATGGTTTGTAGTATCTCAGAAATTGCACTCTGATAATTTTCGTAGTGATGTTCAAACAACAGAAATCTCAATTGCCTTTACATTGAAGGAGTTAGAGAAGGGCACTTATGGTCCAGATATAGGCCAACAGCCGGTTTTTGCATTTCTTCCTCTTAGAACCTATGGCCTGAAATTTATTCTTCAAGGTGATTTTGTCCTTCCTTCATCCAGAGAAGAAGTGGATGGAGATAATCCCTGGAACCAATGGCTATTGTCAGAATTTCCTGGTTTATTTGTCAATGCAGAGAAATCATTTTGTTCTCTTCCATGCTTCAAAAAGAATCCTGGGACTGCTGTGGCAGCTTATATGTCGTTTGTTCCACTTGTTGGGGAAGTGCATGGTTTCTTTTCTTCTCTTCCTCGATTAATTATTTCTCGATTACGAATGTCAAATTGCTTACTTCAGGAAGGACAAAATGAAGAATGGGTTCCTCCGTGCAAGGTCCTAAGAGGTTGGACTAAACAGGCTCGTTTGCTTCTCCCTGAAGGTCTACTGCATGAGCATCTTGGCCTTGGATTCTTGGATAAAGATATAGTTCTGCCTGACCCACTTGCAAGAGCTCTAGGTATTGCAGAGTATGGCCCCACAGTTCTGCTTCAGTTAATGGGTTCTTTATGTGGTAAGCAGAATAGCCTCAAATCAATGGGAATGGTTTGGATGGCCTCTTGGCTAATTGAACTGTATGCAATGTCATTCAAATCCTCTGTTGAAACTTCTTTTGATTCTGGAATAGAAATGGATTTCCTAGAAACACTCCGAAAAATTCCATTCATACCTCTTTCAGATGGTACATATGGTGCAGTGGTTGAAGGCCCAATTTGGCTACACTTTGAAACTGTTGGGTCAGGTTTTGGGGATCATCATGGACTTGAATCTTTTCCAAATTTACATGCTAAACTTCGGATTGTAAGTCCAGGACTCCTTGCATCATCGGATGTGACACCAATTGACAGAGTCATTAGTATGCTTCATAAAATTGGTGTCCAACGGTTGTCCGCACATGAGATTCTCAAGGCGCACATCTTGCCAGCTATATCTGATTATAGAATTACAATTAGGGATGAAGATTTAATGACTGATTATGTTTGCTTTGCAATGGTTCATCTACAGTCGAGCTGCTCTGATTGTTTGGCCGAAAGGGAATACATAATATCAGAACTACGATATAAAGCTTATATTCTAACTAATAATGGCTTTAAACGACTTGCTGAGGCATCAATTCATTTCAGTAAAGAGTTTGGGAATCCTGTGGACATAAATAGGTTGATTGATAGGCTAAATCTGAGGTGGGATGAGGTTCATATCTCCTATTTGAAGCACCCAGTCACTAAATCACTTACAAATGGACTGATGAAGTGGAGAGAATTTTTCCAGAATATAGGCATTGTGGATTTTGTGAAGGTAGTTCAAGTTGAGAAGGGTTTCTCTGAGTTCTCTGAAGCTTTACTTAACAATTTGACTCCGGACCAGCACACTGTTTCCCATGAATTGAATGCCACAGATTGGGAGTCACCTGAATTAGTCCATTTATTATCCTTATTGTCCAGAGATGGCAACCGAAAAGGTTGTGAGTATCTCTTAGAAGTTCTTGATACATTATGGAATGATTTCTATAGTGACAGAGCTACAGGGTACTGCTCTTCTAAGTCTGTAGCAGATAGAAAGCCCTTCAAATCTTCATTTGTGAGCACCATCTGCGATATGCAATGGCTAGTATCAGGAATGGATGATAAACTTCACTATCCCAAGGATTTATATCACGATTGTGTTGCAGTGCGGTCAATTCTTGGTGGTTCTGCCCCATATTCTGTTCCAAAGGCTAGCAGTGAAAAGTTTGTATCTGATATTGGTTTTAAGACAAGAGTCTGTCTTCATGACGCTCTGGAGATTTTGAAAATGTGGAGATATGAGAATCCATTCAGGGCCAGCCTAGCACAAATGTCCAGATTTTACTCGTTAATCTGGAATGAAATGGCTTCTTCAAAGAAGACAACTGCAGAGGAGTTCCATTTGCAACCTTTTGTATTTGTTCCATATGATTCTAGCTTTCGGCATGAAGATGTGGTGTATGGTACATTTTTGTCCCCAGAAGAAGTATACTGGGATGATTCTACTTTCTTTGTTGACCAAATTAAAGAGATTCATTCTCAGTGCAGCTCAACGTTCGGTAGTCATGGCCCCGTAAACAAGATTCTGAGTAATTTCTACCCACCCCTTCATGACTTTTTTGTTGATATATGTGGAATACATGAGATCCCTCCTCTTCGTAGCTACCTTCAGATTATGCTACAGTTTTCAAATGCTGTTTTGCCTTCACAAGCAGCTAATGCCGTTTTCCACATTTTTCAGAAGTGGACTGATGGGCTCCAGTCAGGATTGAGTGCTGAGGATATTGTTTACTTGAAGGATTCTCTTACAATGATGGATTGTACTGTGCTTCCTACTGTACAAAATAAGTGGGTTTCTCTACATCCTTCCTATGGTCTTGTGTGCTGGTGTGATGATAAGAAGTTAAAAGAGCAGTTTATGAATATGGATGGGATTGATTTTCTTTACTTGGGTGAACTGAGTAATGATGATGAAGAGGTCCTATGTACAAAGATCTCCATCCTTATGCAAACCTTAGGGATTCCTGCACTTTCAGAGGTTGTGACCCGTGAGGCGATGTTTAATGGTTCGACAGATTGTAGCATCAAAGCTGCATTGCTGGATTGGGCTTTGCCATATGCACAGCGCTACTTACATAGTACATATCCTGATAAATATTCTCAACTCAAGCAGTCTGGATTCGATATACTAAATCATTTGCGAGTAGTAGAAGTTCAACAGCTGTCTTACCGCAATGTTATAAAGATTGCTGGAAGTGAATCCAAGAAGCGAATTGAATGTAGTTGTCTTCTGCAGGATCATGATCTGTATACAACCCAGGAACCAGATTCTCACGCATTATTTATGGAGCTTTCTCGTTTGTTTTTTGATGGAAAACCAGAGTTACACTTGGCGAATTTCCTTCATATGATCACAACAATGGCTGAATCAGGTTCAACTGAGGAGCAAATAGACTTTTTTATCATCAATAGCCAAAAGGTGCCAAAGCTTCCTGATGGAGAATCTGTTTGGTCCCTGTCACATGCACATAATGATAGGTCACCCCAGCCGAGTGACTGGCCCTTTGTTGGTTGGAGAACCCCACTAAGTTTAGGTTATGCAAATCTTATCCAGGCTCAGGCACAATTTGCACAGCCTACCAGTGTCTCACAAATTGAAATGGATAATGATTCTGAATACCGTGTCAGACAAATAGTTGAATCATCTCCCATTTCAGTCGACATTAAATGGACTATGGACGAGGATACAGCAACAACATCTGCACCTTTAGGGCTGCCAAACTCCAATGATTTGCAAGTAGACTATGACGATGGTGGCAATGGGACGGATATGGATACTGAATTTGATCCCATTAATCCAGATTTTGTTGTTGATCCTCGCGTATCAGGGTCATCTGATGGTAGCAAGATGGACCATCCTAGATATGGCGTCTCTAGTGGAAGAGATGCAATGCTTACCGGAAGGCTAGGTGAGGTTGTTGCTTATAGATACTTAATTGCAAAAGCTGGGAAGTCAGCTGTGAGATGGGTTAATGAAAGAATTGAAACTGGGCTACCCTATGACATAGTTGTAGGTGCCAAGGAAGATAGGCTAGAGTTCATTGAAGTTAAAGCCACCCAAAATCAAAGAAAGGACTGGTTCCGCATATCAATGAGGGAGTGGCAATTTGCAGCGGAAAAAGGCGAAGCCTTCAGCATTTTGCATGTACTTTTATTGGGTAATAATGCCGCAAGAGTCTCCGTTTACAAGAATCCTGTAAGATTGTGTCAGCTGGGTAAGCTAGAGTTGCATCTTATGATGCCTAAGCAGGAGAAGGAATTATTTCTTCTGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3883

Protein Analysis

2838

Amino Acids

319.35

Weight (kDa)

6.1

Isoelectric Point (pI)

43.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SACS PF25794 1306 - 1484 7.1e-09 Sacsin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08300 AT1G08300 AT1G08300 AT4G13750
fragaria_vesca FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_4g13620 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660
malus_domestica MD04G1012800.v1.1 MD04G1012900.v1.1 MD04G1013100.v1.1 MD04G1013300.v1.1
prunus_persica Prupe.1G159000_v2.0.a1 Prupe.1G159100_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G358100_v2.0.a1
pyrus_communis pycom04g01020 pycom04g01030
rosa_chinensis RchiOBHm_Chr4g0414341 RchiOBHm_Chr4g0414351 RchiOBHm_Chr6g0275261 RchiOBHm_Chr7g0213881 RchiOBHm_Chr7g0213891
rosa_laevigata RLG00000008153 RLG00000008155 RLG00000013477
rosa_multiflora Rmu_co8510163.1_g000001 Rmu_sc0004087.1_g000027 Rmu_sc0005196.1_g000014 Rmu_sc0005558.1_g000005 Rmu_sc0005558.1_g000006 Rmu_sc0008100.1_g000005 Rmu_sc0008560.1_g000005
rosa_roxburghii Rroxscaffold_5G00358210 Rroxscaffold_5G00358220 Rroxscaffold_7G00187920 Rroxscaffold_7G00187930 Rroxscaffold_7G00193450
rosa_rugosa Rorug04G0127100 Rorug04G0127200 Rorug04G0127300 Rorug04G0127400 Rorug06G0090600
rosa_samantha Rh4AG185200 Rh4AG185300 Rh4AG185500 Rh4BG184700 Rh4BG184800 Rh4CG198000 Rh4CG198100 Rh4DG182400 Rh4DG182600 Rh6AG204100 Rh6BG207000 Rh6CG209600 Rh6DG200000 Rh7AG277400 Rh7CG296400 Rh7CG296500
rosa_wichuraiana Rw4G015850 Rw4G015860 Rw6G017730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 7418
AasI GACNNNNNNGTC 2 cut(s) 434, 2028
AatII GACGTC 1 cut(s) 1823
Acc36I ACCTGC 2 cut(s) 2449, 3328
AccB1I GGYRCC 3 cut(s) 2812, 7657, 8252
AccB7I CCANNNNNTGG 3 cut(s) 4369, 4895, 6072
AccI GTMKAC 6 cut(s) 2979, 5059, 6666, 7487, 7896, 7977
AccII CGCG 3 cut(s) 426, 2238, 8058
AccIII TCCGGA 2 cut(s) 393, 6031
AclI AACGTT 1 cut(s) 6731
AcoI YGGCCR 2 cut(s) 214, 5700
AcyI GRCGYC 4 cut(s) 504, 1820, 2649, 8106
AdeI CACNNNGTG 1 cut(s) 4058
AfeI AGCGCT 1 cut(s) 7304
AflIII ACRYGT 2 cut(s) 3070, 3152
AhdI GACNNNNNGTC 1 cut(s) 3559
AhlI ACTAGT 2 cut(s) 712, 2696
AjnI CCWGG 9 cut(s) 1230, 3306, 3765, 4763, 4792, 4852, 5482, 7494, 7788
AleI CACNNNNGTG 1 cut(s) 6333
Alw21I GWGCWC 5 cut(s) 393, 3871, 4054, 5131, 6260
Alw26I GTCTC 9 cut(s) 323, 460, 503, 549, 2847, 3545, 7828, 8113, 8419
AlwNI CAGNNNCTG 1 cut(s) 2975
Ama87I CYCGRG 1 cut(s) 379
Aor13HI TCCGGA 2 cut(s) 393, 6031
Aor51HI AGCGCT 1 cut(s) 7304
ArsI GACNNNNNNTTYG 4 cut(s) 2843, 2875, 7724, 7756
AseI ATTAAT 4 cut(s) 1161, 3744, 4934, 8031
Asp700I GAANNNNTTC 9 cut(s) 1523, 2262, 2570, 4995, 5445, 5990, 6176, 6485, 8499
AspLEI GCGC 3 cut(s) 484, 5587, 7305
AsuC2I CCSGG 1 cut(s) 445
AsuII TTCGAA 2 cut(s) 898, 2660
AsuNHI GCTAGC 1 cut(s) 6389
AvaI CYCGRG 1 cut(s) 379
AxyI CCTNAGG 1 cut(s) 7192
BaeGI GKGCMC 2 cut(s) 2815, 4634
BalI TGGCCA 1 cut(s) 216
BamHI GGATCC 2 cut(s) 3008, 4085
BanI GGYRCC 3 cut(s) 2812, 7657, 8252
BanII GRGCYC 3 cut(s) 3871, 5131, 6936
BbsI GAAGAC 6 cut(s) 1128, 2390, 2622, 6431, 6563, 7457
Bbv12I GWGCWC 5 cut(s) 393, 3871, 4054, 5131, 6260
BbvCI CCTCAGC 3 cut(s) 1569, 5778, 6954
BceAI ACGGC 3 cut(s) 526, 1661, 6884
BcgI CGANNNNNNTGC 4 cut(s) 370, 404, 6320, 6354
BciT130I CCWGG 9 cut(s) 1232, 3308, 3767, 4765, 4794, 4854, 5484, 7496, 7790
BciVI GTATCC 3 cut(s) 3142, 7915, 8005
BclI TGATCA 1 cut(s) 7587
BcnI CCSGG 1 cut(s) 445
BcoDI GTCTC 9 cut(s) 323, 460, 503, 549, 2847, 3545, 7828, 8113, 8419
BcuI ACTAGT 2 cut(s) 712, 2696
BfoI RGCGCY 1 cut(s) 7306
BfuAI ACCTGC 2 cut(s) 2449, 3328
BfuI GTATCC 3 cut(s) 3142, 7915, 8005
BglII AGATCT 4 cut(s) 762, 1007, 4384, 7170
BlpI GCTNAGC 1 cut(s) 2046
BmeRI GACNNNNNGTC 1 cut(s) 3559
BmeT110I CYCGRG 1 cut(s) 379
BmrI ACTGGG 4 cut(s) 61, 5885, 6679, 8235
BmtI GCTAGC 1 cut(s) 6393
BmuI ACTGGG 4 cut(s) 61, 5885, 6679, 8235
BoxI GACNNNNGTC 2 cut(s) 1819, 6431
BpiI GAAGAC 6 cut(s) 1128, 2390, 2622, 6431, 6563, 7457
BpmI CTGGAG 3 cut(s) 4137, 6473, 6920
Bpu10I CCTNAGC 7 cut(s) 1376, 1569, 3859, 5778, 6954, 7794, 8481
Bpu1102I GCTNAGC 1 cut(s) 2046
Bpu14I TTCGAA 2 cut(s) 898, 2660
BpuEI CTTGAG 6 cut(s) 2484, 3885, 3941, 4268, 5564, 7328
BpuMI CCSGG 1 cut(s) 445
Bsa29I ATCGAT 1 cut(s) 4449
BsaAI YACGTR 1 cut(s) 1175
BsaBI GATNNNNATC 4 cut(s) 4389, 6324, 7175, 7479
BsaHI GRCGYC 4 cut(s) 504, 1820, 2649, 8106
BsaI GGTCTC 2 cut(s) 2847, 3545
BsaWI WCCGGW 3 cut(s) 393, 6031, 8135
BsaXI ACNNNNNCTCC 4 cut(s) 4135, 4165, 7668, 7698
Bse118I RCCGGY 1 cut(s) 4660
Bse21I CCTNAGG 1 cut(s) 7192
Bse3DI GCAATG 9 cut(s) 592, 2257, 5262, 5670, 6281, 7271, 7417, 8002, 8133
Bse8I GATNNNNATC 4 cut(s) 4389, 6324, 7175, 7479
BseAI TCCGGA 2 cut(s) 393, 6031
BseBI CCWGG 9 cut(s) 1232, 3308, 3767, 4765, 4794, 4854, 5484, 7496, 7790
BseCI ATCGAT 1 cut(s) 4449
BseJI GATNNNNATC 4 cut(s) 4389, 6324, 7175, 7479
BseMI GCAATG 9 cut(s) 592, 2257, 5262, 5670, 6281, 7271, 7417, 8002, 8133
BseRI GAGGAG 8 cut(s) 54, 57, 60, 2180, 3705, 6584, 6819, 7634
BseSI GKGCMC 2 cut(s) 2815, 4634
BseYI CCCAGC 3 cut(s) 7722, 8183, 8449
BsgI GTGCAG 7 cut(s) 2477, 2982, 3857, 5388, 6742, 7188, 7923
Bsh1236I CGCG 3 cut(s) 426, 2238, 8058
Bsh1285I CGRYCG 1 cut(s) 406
BshNI GGYRCC 3 cut(s) 2812, 7657, 8252
BshVI ATCGAT 1 cut(s) 4449
BsiEI CGRYCG 1 cut(s) 406
BsiHKAI GWGCWC 5 cut(s) 393, 3871, 4054, 5131, 6260
BsiHKCI CYCGRG 1 cut(s) 379
BsiSI CCGG 8 cut(s) 6, 39, 344, 394, 444, 4661, 6032, 8136
BsmAI GTCTC 9 cut(s) 323, 460, 503, 549, 2847, 3545, 7828, 8113, 8419
BsmBI CGTCTC 4 cut(s) 323, 460, 549, 8113
BsmI GAATGC 5 cut(s) 1780, 2050, 2740, 3980, 6067
Bso31I GGTCTC 2 cut(s) 2847, 3545
BsoBI CYCGRG 1 cut(s) 379
Bsp119I TTCGAA 2 cut(s) 898, 2660
Bsp1286I GDGCHC 8 cut(s) 393, 2815, 3871, 4054, 4634, 5131, 6260, 6936
Bsp13I TCCGGA 2 cut(s) 393, 6031
Bsp1407I TGTACA 4 cut(s) 1102, 3100, 7015, 7163
Bsp1720I GCTNAGC 1 cut(s) 2046
Bsp19I CCATGG 4 cut(s) 1195, 1731, 2134, 2888
Bsp68I TCGCGA 1 cut(s) 426
BspDI ATCGAT 1 cut(s) 4449
BspEI TCCGGA 2 cut(s) 393, 6031
BspFNI CGCG 3 cut(s) 426, 2238, 8058
BspHI TCATGA 7 cut(s) 1629, 3439, 4356, 4467, 6442, 6787, 7477
BspMAI CTGCAG 3 cut(s) 3325, 6568, 7473
BspMI ACCTGC 2 cut(s) 2449, 3328
BspOI GCTAGC 1 cut(s) 6393
BspQI GCTCTTC 3 cut(s) 672, 1443, 6214
BspT104I TTCGAA 2 cut(s) 898, 2660
BspT107I GGYRCC 3 cut(s) 2812, 7657, 8252
BspTNI GGTCTC 2 cut(s) 2847, 3545
BsrDI GCAATG 9 cut(s) 592, 2257, 5262, 5670, 6281, 7271, 7417, 8002, 8133
BsrFI RCCGGY 1 cut(s) 4660
BsrGI TGTACA 4 cut(s) 1102, 3100, 7015, 7163
BssAI RCCGGY 1 cut(s) 4660
BssNAI GTATAC 2 cut(s) 6667, 7488
BssNI GRCGYC 4 cut(s) 504, 1820, 2649, 8106
BssT1I CCWWGG 9 cut(s) 1195, 1731, 2134, 2353, 2784, 2888, 5080, 6315, 8256
Bst1107I GTATAC 2 cut(s) 6667, 7488
Bst2UI CCWGG 9 cut(s) 1232, 3308, 3767, 4765, 4794, 4854, 5484, 7496, 7790
BstACI GRCGYC 4 cut(s) 504, 1820, 2649, 8106
BstAPI GCANNNNNTGC 4 cut(s) 5593, 6264, 6896, 7805
BstAUI TGTACA 4 cut(s) 1102, 3100, 7015, 7163
BstBAI YACGTR 1 cut(s) 1175
BstBI TTCGAA 2 cut(s) 898, 2660
BstC8I GCNNGC 8 cut(s) 2468, 3108, 3384, 3852, 3856, 5598, 6391, 6496
BstDSI CCRYGG 5 cut(s) 732, 1195, 1731, 2134, 2888
BstEII GGTNACC 3 cut(s) 1020, 2932, 7716
BstENI CCTNNNNNAGG 1 cut(s) 1835
BstFNI CGCG 3 cut(s) 426, 2238, 8058
BstH2I RGCGCY 1 cut(s) 7306
BstHHI GCGC 3 cut(s) 484, 5587, 7305
BstMAI GTCTC 9 cut(s) 323, 460, 503, 549, 2847, 3545, 7828, 8113, 8419
BstMCI CGRYCG 1 cut(s) 406
BstNI CCWGG 9 cut(s) 1232, 3308, 3767, 4765, 4794, 4854, 5484, 7496, 7790
BstPAI GACNNNNGTC 2 cut(s) 1819, 6431
BstPI GGTNACC 3 cut(s) 1020, 2932, 7716
BstSLI GKGCMC 2 cut(s) 2815, 4634
BstUI CGCG 3 cut(s) 426, 2238, 8058
BstV2I GAAGAC 6 cut(s) 1128, 2390, 2622, 6431, 6563, 7457
BstX2I RGATCY 9 cut(s) 762, 1007, 1899, 2348, 3008, 4085, 4384, 6822, 7170
BstXI CCANNNNNNTGG 3 cut(s) 1202, 2135, 2141
BstYI RGATCY 9 cut(s) 762, 1007, 1899, 2348, 3008, 4085, 4384, 6822, 7170
BstZ17I GTATAC 2 cut(s) 6667, 7488
Bsu15I ATCGAT 1 cut(s) 4449
Bsu36I CCTNAGG 1 cut(s) 7192
BsuI GTATCC 3 cut(s) 3142, 7915, 8005
BsuTUI ATCGAT 1 cut(s) 4449
BtgI CCRYGG 5 cut(s) 732, 1195, 1731, 2134, 2888
BtgZI GCGATG 3 cut(s) 324, 3564, 7247
BtsI GCAGTG 6 cut(s) 2446, 3721, 4414, 5376, 6348, 6400
BtuMI TCGCGA 1 cut(s) 426
BveI ACCTGC 2 cut(s) 2449, 3328
Cac8I GCNNGC 8 cut(s) 2468, 3108, 3384, 3852, 3856, 5598, 6391, 6496
CaiI CAGNNNCTG 1 cut(s) 2975
CciI TCATGA 7 cut(s) 1629, 3439, 4356, 4467, 6442, 6787, 7477
CfoI GCGC 3 cut(s) 484, 5587, 7305
Cfr10I RCCGGY 1 cut(s) 4660
ClaI ATCGAT 1 cut(s) 4449
CseI GACGC 6 cut(s) 340, 512, 2657, 3416, 6455, 8095
CspCI CAANNNNNGTGG 6 cut(s) 699, 734, 3945, 3980, 7007, 7042
DraI TTTAAA 2 cut(s) 2508, 5767
DraIII CACNNNGTG 1 cut(s) 4058
DrdI GACNNNNNNGTC 2 cut(s) 434, 2028
DriI GACNNNNNGTC 1 cut(s) 3559
DseDI GACNNNNNNGTC 2 cut(s) 434, 2028
EaeI YGGCCR 2 cut(s) 214, 5700
Eam1105I GACNNNNNGTC 1 cut(s) 3559
EciI GGCGGA 4 cut(s) 17, 25, 287, 428
Ecl136II GAGCTC 2 cut(s) 3869, 5129
Eco130I CCWWGG 9 cut(s) 1195, 1731, 2134, 2353, 2784, 2888, 5080, 6315, 8256
Eco24I GRGCYC 3 cut(s) 3871, 5131, 6936
Eco31I GGTCTC 2 cut(s) 2847, 3545
Eco47III AGCGCT 1 cut(s) 7304
Eco53kI GAGCTC 2 cut(s) 3869, 5129
Eco81I CCTNAGG 1 cut(s) 7192
Eco88I CYCGRG 1 cut(s) 379
Eco91I GGTNACC 3 cut(s) 1020, 2932, 7716
EcoICRI GAGCTC 2 cut(s) 3869, 5129
EcoNI CCTNNNNNAGG 1 cut(s) 1835
EcoO109I RGGNCCY 4 cut(s) 376, 692, 5011, 7156
EcoO65I GGTNACC 3 cut(s) 1020, 2932, 7716
EcoRI GAATTC 3 cut(s) 894, 1088, 3794
EcoRII CCWGG 9 cut(s) 1230, 3306, 3765, 4763, 4792, 4852, 5482, 7494, 7788
EcoT14I CCWWGG 9 cut(s) 1195, 1731, 2134, 2353, 2784, 2888, 5080, 6315, 8256
EcoT22I ATGCAT 1 cut(s) 1780
EcoT38I GRGCYC 3 cut(s) 3871, 5131, 6936
ErhI CCWWGG 9 cut(s) 1195, 1731, 2134, 2353, 2784, 2888, 5080, 6315, 8256
Esp3I CGTCTC 4 cut(s) 323, 460, 549, 8113
FalI AAGNNNNNCTT 6 cut(s) 1422, 1454, 2985, 3017, 6000, 6032
FauI CCCGC 3 cut(s) 241, 280, 1405
FauNDI CATATG 4 cut(s) 5362, 6604, 7294, 7584
FbaI TGATCA 1 cut(s) 7587
FblI GTMKAC 6 cut(s) 2979, 5059, 6666, 7487, 7896, 7977
FriOI GRGCYC 3 cut(s) 3871, 5131, 6936
GlaI GCGC 3 cut(s) 483, 5586, 7304
GsaI CCCAGC 3 cut(s) 7726, 8187, 8453
GsuI CTGGAG 3 cut(s) 4137, 6473, 6920
HaeII RGCGCY 1 cut(s) 7306
HapII CCGG 8 cut(s) 6, 39, 344, 394, 444, 4661, 6032, 8136
HgaI GACGC 6 cut(s) 340, 512, 2657, 3416, 6455, 8095
HhaI GCGC 3 cut(s) 484, 5587, 7305
Hin1I GRCGYC 4 cut(s) 504, 1820, 2649, 8106
Hin6I GCGC 3 cut(s) 482, 5585, 7303
HinP1I GCGC 3 cut(s) 482, 5585, 7303
HincII GTYRAC 7 cut(s) 502, 1789, 2188, 2319, 2908, 6694, 7897
HindII GTYRAC 7 cut(s) 502, 1789, 2188, 2319, 2908, 6694, 7897
HindIII AAGCTT 6 cut(s) 1325, 2294, 2502, 5739, 6009, 7664
HpaII CCGG 8 cut(s) 6, 39, 344, 394, 444, 4661, 6032, 8136
Hpy99I CGWCG 2 cut(s) 431, 463
HpyCH4IV ACGT 5 cut(s) 784, 1174, 1820, 2190, 6731
HpySE526I ACGT 5 cut(s) 784, 1174, 1820, 2190, 6731
Hsp92I GRCGYC 4 cut(s) 504, 1820, 2649, 8106
HspAI GCGC 3 cut(s) 482, 5585, 7303
Kpn2I TCCGGA 2 cut(s) 393, 6031
Ksp22I TGATCA 1 cut(s) 7587
LguI GCTCTTC 3 cut(s) 672, 1443, 6214
LmnI GCTCC 9 cut(s) 346, 396, 1555, 2869, 3967, 4156, 6939, 7525, 7621
MaeII ACGT 5 cut(s) 784, 1174, 1820, 2190, 6731
MfeI CAATTG 5 cut(s) 1500, 2039, 2793, 4599, 5514
MflI RGATCY 9 cut(s) 762, 1007, 1899, 2348, 3008, 4085, 4384, 6822, 7170
MhlI GDGCHC 8 cut(s) 393, 2815, 3871, 4054, 4634, 5131, 6260, 6936
MlsI TGGCCA 1 cut(s) 216
MluNI TGGCCA 1 cut(s) 216
MmeI TCCRAC 8 cut(s) 1892, 2101, 3980, 4045, 4075, 5003, 5578, 7730
Mox20I TGGCCA 1 cut(s) 216
Mph1103I ATGCAT 1 cut(s) 1780
MroI TCCGGA 2 cut(s) 393, 6031
MroXI GAANNNNTTC 9 cut(s) 1523, 2262, 2570, 4995, 5445, 5990, 6176, 6485, 8499
MscI TGGCCA 1 cut(s) 216
Msp20I TGGCCA 1 cut(s) 216
MspA1I CMGCKG 6 cut(s) 962, 1882, 7399, 8195, 8351, 8449
MspI CCGG 8 cut(s) 6, 39, 344, 394, 444, 4661, 6032, 8136
MunI CAATTG 5 cut(s) 1500, 2039, 2793, 4599, 5514
Mva1269I GAATGC 5 cut(s) 1780, 2050, 2740, 3980, 6067
MvaI CCWGG 9 cut(s) 1232, 3308, 3767, 4765, 4794, 4854, 5484, 7496, 7790
MvnI CGCG 3 cut(s) 426, 2238, 8058
NciI CCSGG 1 cut(s) 445
NcoI CCATGG 4 cut(s) 1195, 1731, 2134, 2888
NdeI CATATG 4 cut(s) 5362, 6604, 7294, 7584
NheI GCTAGC 1 cut(s) 6389
NmeAIII GCCGAG 3 cut(s) 397, 532, 7752
NruI TCGCGA 1 cut(s) 426
NsiI ATGCAT 1 cut(s) 1780
NspV TTCGAA 2 cut(s) 898, 2660
OliI CACNNNNGTG 1 cut(s) 6333
PaeI GCATGC 2 cut(s) 2470, 3854
PagI TCATGA 7 cut(s) 1629, 3439, 4356, 4467, 6442, 6787, 7477
PciI ACATGT 2 cut(s) 3070, 3152
PciSI GCTCTTC 3 cut(s) 672, 1443, 6214
PctI GAATGC 5 cut(s) 1780, 2050, 2740, 3980, 6067
PdmI GAANNNNTTC 9 cut(s) 1523, 2262, 2570, 4995, 5445, 5990, 6176, 6485, 8499
PflFI GACNNNGTC 1 cut(s) 5522
PflMI CCANNNNNTGG 3 cut(s) 4369, 4895, 6072
PfoI TCCNGGA 1 cut(s) 5482
Ppu21I YACGTR 1 cut(s) 1175
PpuMI RGGWCCY 4 cut(s) 376, 692, 5011, 7156
PscI ACATGT 2 cut(s) 3070, 3152
PshAI GACNNNNGTC 2 cut(s) 1819, 6431
PshBI ATTAAT 4 cut(s) 1161, 3744, 4934, 8031
PsiI TTATAA 1 cut(s) 7418
Psp124BI GAGCTC 2 cut(s) 3871, 5131
Psp1406I AACGTT 1 cut(s) 6731
Psp5II RGGWCCY 4 cut(s) 376, 692, 5011, 7156
Psp6I CCWGG 9 cut(s) 1230, 3306, 3765, 4763, 4792, 4852, 5482, 7494, 7788
PspEI GGTNACC 3 cut(s) 1020, 2932, 7716
PspFI CCCAGC 3 cut(s) 7722, 8183, 8449
PspGI CCWGG 9 cut(s) 1230, 3306, 3765, 4763, 4792, 4852, 5482, 7494, 7788
PspPPI RGGWCCY 4 cut(s) 376, 692, 5011, 7156
PsrI GAACNNNNNNTAC 2 cut(s) 7374, 7406
PstI CTGCAG 3 cut(s) 3325, 6568, 7473
PstNI CAGNNNCTG 1 cut(s) 2975
PsuI RGATCY 9 cut(s) 762, 1007, 1899, 2348, 3008, 4085, 4384, 6822, 7170
PsyI GACNNNGTC 1 cut(s) 5522
PvuII CAGCTG 4 cut(s) 962, 7399, 8195, 8449
RruI TCGCGA 1 cut(s) 426
SacI GAGCTC 2 cut(s) 3871, 5131
SalI GTCGAC 1 cut(s) 7895
SapI GCTCTTC 3 cut(s) 672, 1443, 6214
SduI GDGCHC 8 cut(s) 393, 2815, 3871, 4054, 4634, 5131, 6260, 6936
SfuI TTCGAA 2 cut(s) 898, 2660
SmlI CTYRAG 6 cut(s) 2499, 3900, 3920, 4247, 5579, 7343
SmoI CTYRAG 6 cut(s) 2499, 3900, 3920, 4247, 5579, 7343
SpeI ACTAGT 2 cut(s) 712, 2696
SphI GCATGC 2 cut(s) 2470, 3854
SspI AATATT 2 cut(s) 2548, 7334
SstI GAGCTC 2 cut(s) 3871, 5131
StyI CCWWGG 9 cut(s) 1195, 1731, 2134, 2353, 2784, 2888, 5080, 6315, 8256
TaiI ACGT 5 cut(s) 787, 1177, 1823, 2193, 6734
TatI WGTACW 8 cut(s) 1102, 2668, 3100, 6998, 7015, 7163, 7316, 8383
TauI GCSGC 4 cut(s) 413, 443, 1051, 8408
TspGWI ACGGA 5 cut(s) 442, 721, 4992, 8018, 8407
Tth111I GACNNNGTC 1 cut(s) 5522
Van91I CCANNNNNTGG 3 cut(s) 4369, 4895, 6072
VspI ATTAAT 4 cut(s) 1161, 3744, 4934, 8031
XagI CCTNNNNNAGG 1 cut(s) 1835
XbaI TCTAGA 1 cut(s) 2707
XcmI CCANNNNNNNNNTGG 2 cut(s) 4744, 8099
XmiI GTMKAC 6 cut(s) 2979, 5059, 6666, 7487, 7896, 7977
XmnI GAANNNNTTC 9 cut(s) 1523, 2262, 2570, 4995, 5445, 5990, 6176, 6485, 8499
ZraI GACGTC 1 cut(s) 1821
Zsp2I ATGCAT 1 cut(s) 1780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.