Rh4AG185500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000582
Physical Location & Seq
Forward (+)
46168933 .. 46170876
1944 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG185500.1

Sequence Viewer

Length: 1284 bp
ATGCATATTTCAGCCATCCGGGTTGCTAGGGATTTTGATGCTCTGAAGAAATCTGGAGAGTTAATTATTCAAAAACCAGATTCAAGATGTATGAAGCGACCACTGAGAATGCAGCAAGAGGAACATTTCACCTCCTTCATACATAAACAGTTTTGTGGCAAGCACATTAGGTTTGATTCAGAGGATGAAGGTAGTGATGATGAAAATAATGACCATTTTTGTGGCAAGCACATTAGGTTTGATCCAAAGGATGAAAGTAGTGATGATGAAACTAATGACCATGTCAGAAGCAACCAGGTTAACTTATCCTCACAATCTGCTAAAAGTTCTGACAGAGTGAACTGTGATGATGGTTTGGTTGTCTCCCCATCACGATCCGAGGGTCCACTCAACCAGGTCACATGCAGTGTGGTTAACTTCTCATCACAATCCGGTGGAAGGTCTGACTGTGTGAGCAGCTGTCCTTACCCATCTGCAATAGAAGAGATACAACGGCTTGGGTTGGACCAGCTTTTCCCAGATAGTGGCAACCAAAAGCACAAAGAGACAAATTACTCGGTTAAAAAGAAAAGAAAATCTGAAAATCTTACAAGTGCAATATCTACGCCCCCCAAATTGTGTAAGACAGCAAAGGTAGAACAAGTTGCTTGGCCAATAGAGAATGATAGGCAAGCCAATAATGTTAGAAATTTGGATGGAAGGAAAGCGGAAAGCTGGCCACCTGTTGATTGGGGAACTGCACCAAGGTATGATTATGCTTGTGCAAATGGCTTTAGGACACAGGCACCAATTTTTCAGCCTAGAAGTGACTTACAAAAGAAGGGGGTTGATAATTATGACGGATTTATTAGTCAGACGGATCATATGATTCCTGTTACAGATACTCCTCAGTGGGGCACATCTAACTTTGGCAAGAGAGATGGTCTTAGTACTTGCACACCTGATGCAATACAAGAAAAGGAAACTGGGAGACTAGGTGAGCTTGCTGCTTTTAAATACTTCATTGAGAAAGCTGGTAAGTCAGTTGTGAAGTGGGTTAATGAGCATTGTGAAACAAGGCTACTGTATGACATAGTGGTAGGGGAGAATGAAGATGGTAAAGAGTTCTTTGAAGTTAAAGCAACCAGAAATCCAACCAAAGACTGGTTTGAAATGTCTGTGAGACAGTTGCAATTTGCAGTTGAACAAGGTGAAGCTTTCAGTATTGCGCATGTCATTTTATTAGATAATGATGTTGCGACAGTGAGAGTACAACAATATGGAGAAACTATTGATGAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3883

Protein Analysis

427

Amino Acids

48.18

Weight (kDa)

5.5

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOV_C PF13020 326 - 410 2.4e-15 Protein NO VEIN, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08300 AT1G08300 AT1G08300 AT4G13750
fragaria_vesca FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_4g13620 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660
malus_domestica MD04G1012800.v1.1 MD04G1012900.v1.1 MD04G1013100.v1.1 MD04G1013300.v1.1
prunus_persica Prupe.1G159000_v2.0.a1 Prupe.1G159100_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G358100_v2.0.a1
pyrus_communis pycom04g01020 pycom04g01030
rosa_chinensis RchiOBHm_Chr4g0414341 RchiOBHm_Chr4g0414351 RchiOBHm_Chr6g0275261 RchiOBHm_Chr7g0213881 RchiOBHm_Chr7g0213891
rosa_laevigata RLG00000008153 RLG00000008155 RLG00000013477
rosa_multiflora Rmu_co8510163.1_g000001 Rmu_sc0004087.1_g000027 Rmu_sc0005196.1_g000014 Rmu_sc0005558.1_g000005 Rmu_sc0005558.1_g000006 Rmu_sc0008100.1_g000005 Rmu_sc0008560.1_g000005
rosa_roxburghii Rroxscaffold_5G00358210 Rroxscaffold_5G00358220 Rroxscaffold_7G00187920 Rroxscaffold_7G00187930 Rroxscaffold_7G00193450
rosa_rugosa Rorug04G0127100 Rorug04G0127200 Rorug04G0127300 Rorug04G0127400 Rorug06G0090600
rosa_samantha Rh4AG185200 Rh4AG185300 Rh4AG185500 Rh4BG184700 Rh4BG184800 Rh4CG198000 Rh4CG198100 Rh4DG182400 Rh4DG182600 Rh6AG204100 Rh6BG207000 Rh6CG209600 Rh6DG200000 Rh7AG277400 Rh7CG296400 Rh7CG296500
rosa_wichuraiana Rw4G015850 Rw4G015860 Rw6G017730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1209
AccB1I GGYRCC 1 cut(s) 784
AccB7I CCANNNNNTGG 2 cut(s) 524, 1143
AciI CCGC 1 cut(s) 707
AclWI GGATC 3 cut(s) 236, 369, 867
AcoI YGGCCR 2 cut(s) 650, 716
AcsI RAATTY 1 cut(s) 688
AcuI CTGAAG 1 cut(s) 65
AfaI GTAC 2 cut(s) 931, 1251
AfiI CCNNNNNNNGG 4 cut(s) 438, 524, 893, 1143
AgsI TTSAA 5 cut(s) 71, 84, 1112, 1151, 1184
AjnI CCWGG 2 cut(s) 294, 393
AluBI AGCT 6 cut(s) 459, 511, 714, 982, 1013, 1196
AluI AGCT 6 cut(s) 459, 511, 714, 982, 1013, 1196
Alw26I GTCTC 4 cut(s) 367, 539, 964, 1156
AlwI GGATC 3 cut(s) 236, 369, 867
AoxI GGCC 2 cut(s) 650, 716
ApeKI GCWGC 3 cut(s) 112, 456, 986
ApoI RAATTY 1 cut(s) 688
AspLEI GCGC 1 cut(s) 1210
AspS9I GGNCC 2 cut(s) 383, 505
AsuC2I CCSGG 1 cut(s) 20
AsuHPI GGTGA 3 cut(s) 121, 989, 1202
AvaII GGWCC 2 cut(s) 383, 505
BaeGI GKGCMC 1 cut(s) 899
BalI TGGCCA 2 cut(s) 652, 718
BanI GGYRCC 1 cut(s) 784
BbvI GCAGC 3 cut(s) 124, 468, 973
BccI CCATC 7 cut(s) 23, 344, 376, 478, 689, 914, 1088
BceAI ACGGC 1 cut(s) 509
BciT130I CCWGG 2 cut(s) 296, 395
BcnI CCSGG 1 cut(s) 20
BcoDI GTCTC 4 cut(s) 367, 539, 964, 1156
BfaI CTAG 3 cut(s) 27, 801, 974
BisI GCNGC 3 cut(s) 113, 457, 987
BlsI GCNGC 3 cut(s) 114, 458, 988
BmcAI AGTACT 1 cut(s) 931
Bme1390I CCNGG 3 cut(s) 20, 296, 395
Bme18I GGWCC 2 cut(s) 383, 505
BmgT120I GGNCC 2 cut(s) 383, 505
BmiI GGNNCC 2 cut(s) 384, 786
BmrFI CCNGG 3 cut(s) 20, 296, 395
BmrI ACTGGG 1 cut(s) 975
BmsI GCATC 2 cut(s) 28, 934
BmuI ACTGGG 1 cut(s) 975
BpmI CTGGAG 1 cut(s) 75
BpuMI CCSGG 1 cut(s) 20
BsaJI CCNNGG 2 cut(s) 378, 743
BsaWI WCCGGW 1 cut(s) 431
BsaXI ACNNNNNCTCC 4 cut(s) 868, 898, 961, 991
Bsc4I CCNNNNNNNGG 4 cut(s) 438, 524, 893, 1143
Bse1I ACTGG 2 cut(s) 970, 1148
BseBI CCWGG 2 cut(s) 296, 395
BseDI CCNNGG 2 cut(s) 378, 743
BseGI GGATG 4 cut(s) 15, 190, 256, 700
BseLI CCNNNNNNNGG 4 cut(s) 438, 524, 893, 1143
BseMII CTCAG 2 cut(s) 95, 902
BseNI ACTGG 2 cut(s) 970, 1148
BseRI GAGGAG 1 cut(s) 876
BseSI GKGCMC 1 cut(s) 899
BseXI GCAGC 3 cut(s) 124, 468, 973
BsgI GTGCAG 1 cut(s) 723
BshFI GGCC 2 cut(s) 652, 718
BshNI GGYRCC 1 cut(s) 784
BsiSI CCGG 2 cut(s) 19, 432
BslI CCNNNNNNNGG 4 cut(s) 438, 524, 893, 1143
BsmAI GTCTC 4 cut(s) 367, 539, 964, 1156
BsmI GAATGC 1 cut(s) 114
BsnI GGCC 2 cut(s) 652, 718
Bsp1286I GDGCHC 1 cut(s) 899
Bsp143I GATC 3 cut(s) 241, 374, 859
BspACI CCGC 1 cut(s) 707
BspANI GGCC 2 cut(s) 652, 718
BspCNI CTCAG 2 cut(s) 96, 901
BspLI GGNNCC 2 cut(s) 384, 786
BspPI GGATC 3 cut(s) 236, 369, 867
BspT107I GGYRCC 1 cut(s) 784
BsrI ACTGG 2 cut(s) 970, 1148
BssECI CCNNGG 2 cut(s) 378, 743
BssMI GATC 3 cut(s) 241, 374, 859
BssT1I CCWWGG 1 cut(s) 743
Bst2UI CCWGG 2 cut(s) 296, 395
Bst4CI ACNGT 6 cut(s) 150, 344, 449, 1065, 1167, 1243
Bst6I CTCTTC 1 cut(s) 477
BstC8I GCNNGC 5 cut(s) 161, 227, 672, 716, 984
BstDEI CTNAG 3 cut(s) 104, 888, 926
BstF5I GGATG 4 cut(s) 15, 190, 256, 700
BstHHI GCGC 1 cut(s) 1210
BstKTI GATC 3 cut(s) 244, 377, 862
BstMAI GTCTC 4 cut(s) 367, 539, 964, 1156
BstMBI GATC 3 cut(s) 241, 374, 859
BstNI CCWGG 2 cut(s) 296, 395
BstNSI RCATGY 2 cut(s) 405, 1214
BstSCI CCNGG 3 cut(s) 18, 294, 393
BstSLI GKGCMC 1 cut(s) 899
BstV1I GCAGC 3 cut(s) 124, 468, 973
BstXI CCANNNNNNTGG 1 cut(s) 221
BsuRI GGCC 2 cut(s) 652, 718
BtsCI GGATG 4 cut(s) 15, 190, 256, 700
BtsI GCAGTG 1 cut(s) 412
BtsIMutI CAGTG 4 cut(s) 101, 412, 896, 1248
Cac8I GCNNGC 5 cut(s) 161, 227, 672, 716, 984
CfoI GCGC 1 cut(s) 1210
Cfr13I GGNCC 2 cut(s) 383, 505
CsiI ACCWGGT 2 cut(s) 294, 393
Csp6I GTAC 2 cut(s) 930, 1250
CviAII CATG 3 cut(s) 281, 402, 1211
CviQI GTAC 2 cut(s) 930, 1250
DdeI CTNAG 3 cut(s) 104, 888, 926
DpnI GATC 3 cut(s) 243, 376, 861
DpnII GATC 3 cut(s) 241, 374, 859
DraI TTTAAA 1 cut(s) 994
EaeI YGGCCR 2 cut(s) 650, 716
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
Eco130I CCWWGG 1 cut(s) 743
Eco47I GGWCC 2 cut(s) 383, 505
Eco57I CTGAAG 1 cut(s) 65
EcoRII CCWGG 2 cut(s) 294, 393
EcoT14I CCWWGG 1 cut(s) 743
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 743
FaeI CATG 3 cut(s) 284, 405, 1214
FatI CATG 3 cut(s) 280, 401, 1210
FauNDI CATATG 1 cut(s) 864
Fnu4HI GCNGC 3 cut(s) 113, 457, 987
FokI GGATG 4 cut(s) 2, 197, 263, 707
Fsp4HI GCNGC 3 cut(s) 113, 457, 987
FspBI CTAG 3 cut(s) 27, 801, 974
FspI TGCGCA 1 cut(s) 1209
GlaI GCGC 1 cut(s) 1209
GluI GCNGC 3 cut(s) 113, 457, 987
GsuI CTGGAG 1 cut(s) 75
HaeIII GGCC 2 cut(s) 652, 718
HapII CCGG 2 cut(s) 19, 432
HhaI GCGC 1 cut(s) 1210
Hin1II CATG 3 cut(s) 284, 405, 1214
Hin6I GCGC 1 cut(s) 1208
HinP1I GCGC 1 cut(s) 1208
HincII GTYRAC 2 cut(s) 301, 415
HindII GTYRAC 2 cut(s) 301, 415
HindIII AAGCTT 1 cut(s) 1194
HinfI GANTC 3 cut(s) 80, 176, 868
HpaI GTTAAC 2 cut(s) 301, 415
HpaII CCGG 2 cut(s) 19, 432
HphI GGTGA 3 cut(s) 121, 989, 1202
Hpy166II GTNNAC 4 cut(s) 301, 340, 386, 415
Hpy188I TCNGA 8 cut(s) 45, 181, 287, 331, 379, 445, 580, 855
Hpy188III TCNNGA 3 cut(s) 54, 84, 372
Hpy8I GTNNAC 4 cut(s) 301, 340, 386, 415
HpyAV CCTTC 5 cut(s) 145, 182, 432, 693, 814
HpyCH4III ACNGT 6 cut(s) 150, 344, 449, 1065, 1167, 1243
HpyF3I CTNAG 3 cut(s) 104, 888, 926
Hsp92II CATG 3 cut(s) 284, 405, 1214
HspAI GCGC 1 cut(s) 1208
KspAI GTTAAC 2 cut(s) 301, 415
Kzo9I GATC 3 cut(s) 241, 374, 859
Lsp1109I GCAGC 3 cut(s) 124, 468, 973
LweI GCATC 2 cut(s) 28, 934
MabI ACCWGGT 2 cut(s) 294, 393
MaeI CTAG 3 cut(s) 27, 801, 974
MaeIII GTNAC 3 cut(s) 397, 806, 874
MalI GATC 3 cut(s) 243, 376, 861
MboI GATC 3 cut(s) 241, 374, 859
MboII GAAGA 3 cut(s) 58, 494, 1103
MhlI GDGCHC 1 cut(s) 899
MlsI TGGCCA 2 cut(s) 652, 718
MluCI AATT 7 cut(s) 63, 550, 614, 688, 789, 832, 1172
MluNI TGGCCA 2 cut(s) 652, 718
MmeI TCCRAC 2 cut(s) 483, 1157
MnlI CCTC 6 cut(s) 112, 142, 175, 319, 373, 897
Mox20I TGGCCA 2 cut(s) 652, 718
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 2 cut(s) 652, 718
MseI TTAA 7 cut(s) 62, 300, 414, 561, 993, 1038, 1116
MslI CAYNNNNRTG 1 cut(s) 219
Msp20I TGGCCA 2 cut(s) 652, 718
MspA1I CMGCKG 1 cut(s) 459
MspI CCGG 2 cut(s) 19, 432
MspR9I CCNGG 3 cut(s) 20, 296, 395
Mva1269I GAATGC 1 cut(s) 114
MvaI CCWGG 2 cut(s) 296, 395
NciI CCSGG 1 cut(s) 20
NdeI CATATG 1 cut(s) 864
NdeII GATC 3 cut(s) 241, 374, 859
NlaIII CATG 3 cut(s) 284, 405, 1214
NlaIV GGNNCC 2 cut(s) 384, 786
NmuCI GTSAC 2 cut(s) 397, 806
NsbI TGCGCA 1 cut(s) 1209
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 405, 1214
PctI GAATGC 1 cut(s) 114
PfeI GAWTC 3 cut(s) 80, 176, 868
PflFI GACNNNGTC 1 cut(s) 281
PflMI CCANNNNNTGG 2 cut(s) 524, 1143
PkrI GCNGC 3 cut(s) 114, 458, 988
Psp6I CCWGG 2 cut(s) 294, 393
PspGI CCWGG 2 cut(s) 294, 393
PspN4I GGNNCC 2 cut(s) 384, 786
PspPI GGNCC 2 cut(s) 383, 505
PsyI GACNNNGTC 1 cut(s) 281
PvuII CAGCTG 1 cut(s) 459
RsaI GTAC 2 cut(s) 931, 1251
RsaNI GTAC 2 cut(s) 930, 1250
RseI CAYNNNNRTG 1 cut(s) 219
SaqAI TTAA 7 cut(s) 62, 300, 414, 561, 993, 1038, 1116
SatI GCNGC 3 cut(s) 113, 457, 987
Sau3AI GATC 3 cut(s) 241, 374, 859
Sau96I GGNCC 2 cut(s) 383, 505
ScaI AGTACT 1 cut(s) 931
ScrFI CCNGG 3 cut(s) 20, 296, 395
SduI GDGCHC 1 cut(s) 899
SexAI ACCWGGT 2 cut(s) 294, 393
SfaNI GCATC 2 cut(s) 28, 934
SinI GGWCC 2 cut(s) 383, 505
SmiMI CAYNNNNRTG 1 cut(s) 219
Sse9I AATT 7 cut(s) 63, 550, 614, 688, 789, 832, 1172
SsiI CCGC 1 cut(s) 707
SspMI CTAG 3 cut(s) 27, 801, 974
StyD4I CCNGG 3 cut(s) 18, 294, 393
StyI CCWWGG 1 cut(s) 743
TaaI ACNGT 6 cut(s) 150, 344, 449, 1065, 1167, 1243
TasI AATT 7 cut(s) 63, 550, 614, 688, 789, 832, 1172
TatI WGTACW 2 cut(s) 929, 1249
TfiI GAWTC 3 cut(s) 80, 176, 868
Tru1I TTAA 7 cut(s) 62, 300, 414, 561, 993, 1038, 1116
Tru9I TTAA 7 cut(s) 62, 300, 414, 561, 993, 1038, 1116
TscAI CASTG 4 cut(s) 108, 412, 896, 1248
TseFI GTSAC 2 cut(s) 397, 806
TseI GCWGC 3 cut(s) 112, 456, 986
Tsp45I GTSAC 2 cut(s) 397, 806
TspDTI ATGAA 8 cut(s) 107, 127, 201, 216, 267, 282, 991, 1104
TspGWI ACGGA 2 cut(s) 855, 872
TspRI CASTG 4 cut(s) 108, 412, 896, 1248
Tth111I GACNNNGTC 1 cut(s) 281
Van91I CCANNNNNTGG 2 cut(s) 524, 1143
VpaK11BI GGWCC 2 cut(s) 383, 505
XapI RAATTY 1 cut(s) 688
XceI RCATGY 2 cut(s) 405, 1214
XcmI CCANNNNNNNNNTGG 2 cut(s) 726, 1140
XspI CTAG 3 cut(s) 27, 801, 974
ZrmI AGTACT 1 cut(s) 931
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.