Rroxscaffold_5G00358220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000582
Physical Location & Seq
Forward (+)
38281167 .. 38306622
25456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00358220.1

Sequence Viewer

Length: 8706 bp
ATGCAGCAAGACAAAGGTTTCAGTACTATTTCTTGTCATGTTGATTCATTTTTCTCTGTACATAAGCAGTTTTATGGCAAGCACATTAGATTTGATTTAGAGGACGAAGGTAGTGATGATGAAAATTATGACCGTGTCGAAACAACCAGGTTAACTTATCTTCACAATCTGCTAAAAGTTATGACGGGGGTGGACTGCGATGATGGTTTGGTTGTCTCTCCATCACAATCCAAGGGTCCACACAACCAGGTTAACTTATCATCACAATCTGCTGAAAATTTTGACAGAGTGAACAACGATGATGGTTTGGTAGTCTCTCCATCACAATCCAAAGCTCCACTTCCCTCATTGAAAATGCAGCAAGACAAAGAAAACTCGGAGGATGAATGTAGTGATGATGATTTACATGATGAAGAAGATTATAATCGTGACCAGGTCACATGCGGTGTGGTTAACATCTCTTCACAATGCGGTGGAAGGTCGACGTGTGAGCAGTGTCCGTACCCATCTGCAATAGAAGAGATACAACGGCTTGGGTTGGACCAGCTTTCCCCGGATAGTGGCAGCCAAAAGCACAAAGGGCCTAATGACTCGGTTAAAAAGAAGAGAAAATCTGAAATTCCTGTAAGTGCAATCTCTATGCCTCCCAAATTGTGTAAGACAGAAAAGGCGAAACAAGTTGCTCAACCAATAGAGAATGGCGGGGGAGCCAATAATGTGAGAAATTTGGATGGAAGGAAAGTGGAAAGCTGGCCACTGTTGATTGGAGAATTGCACCAAGTGGGGACTGGGAACTGGGCACACCCACCTCCTCACCTCTCCCACCCACAATTTCCTTACCCCAATTTTCCTCCCCAAAACCCCACCAATTTAAACATCTATCCCCCTCAAGCTTCCGCCTTTCCACCACCGCAACCGCAACCGCCGCCGCCGCAACCACCAAACCCTAATTTCCCCCTCCAACACCCTATAGACGTCAATATCTTTCCCGCCAACCACTATGGACACTCCTCATTTTCCAATTACTACCCAACCCCAAGCTCTAATTTCTCTCTGCAAAACCCTAACCCCACTCCCCACTCCGCTCCACCCTTCCCCCCTCAGAGCTTCTCCCGTAACCCTAACGAGGCGCCCGACCCGCCGAACCTCTCGAATTCGGCTAGGCATTTGCCTGAGGACCCGAGAGAGGTGCTCCAGAAGATCGACTGTGCGGTGGAGAAGCTTCGCGACGAGCTTGTCGCCGCCGGAAAGAACGTCTCGGCCTGGAAGGTCTTACAGTCTGCGCTTCTGATGCTCAATGTTGATGCCGAGACTTGTTTGGGCCTCAAAGTTGAGCAAGTGCCGTCTCTTCACCGCCTCATGGTCACTGAAGGACGGATAAATGCATTTATTCATTGCTTTGTTGGAGTTCGAACAATTACATCTTTGTATGATTTGGAAGTTGCAATCTGCAAGAATGAGGATATTGAGCAGTTTGAAGAGCTTGGATTGGGTCCTTTGTTGCAACACCCACTAGTTTTGCAATATTTCTCGGTGGATTCTGAAACAACTGAAGTCTTTAAGATATCTAGTGAGGAGATACTACATTTACTCAGTAGGTACCTAAAGAAGCCGAAAGTTAAGGAAAATTCTGTTGAGGGGTTCTTGGACTTCATTGTTACGAAGCGACCCGTTGCAGGCAAGGAAAAGCTTGGAATTCGAATATTTAGTTTGGGGGTGCATGCTTCTGCTATGCGTGAAGCCAAGGCTTCAGAACGTGCAGCTTTATGGAAATCATTACAGGAATTAAAACAAAAGTCTCCCAAAATATCTAGGAGGAAGGCACCAATTTTCTCCTCGCTGAAAAAGCGGCTAGATAAACATTTTCGCGCCATTTCGCAGCAATCTGGATTGTGTTCTGTTGTGAATGGAAAGGAAGATACACTTGTTTCTTCAAGATCAAAGGATGAAGGTATTAATGATTATTTACATGATGACAAAGGTAATGACCATGGTACTGGTGGTCATATTGACTCACTAAAATCCCTGAAAAGTTCTGACAGAGAGGGTAAGTGTTCTTACTTGTCTGAAGTGGAGGAGAGGTCTTCGCCCATGTCAAACCACCCTTCTCCAAGCCAAAAGCATAATGAGAGTAATGGGTCAGTTAAAAAGAAAAGAAAATACGAAAATCTAAGCTGCCCTATCTCTGTTCCCTCAAAGTTGCGCAAGAGAGAGAAGGTAGAGCAAGATGCTCTTCCTACAGAAAGTGACAGTGAAACTAAGGAGGTCAGCGAGATGCTTAAACTTGATCTTTCAATTGCCAATAATCTTTTAAGGATGTTCATTACAACTTGGAAGGAGGCATGTAGGGAGCAGCCTGTGGCTGAGGTACTTTGGGCCATGCTTCGCTCTTGTAATACAAAATATAGGAGGACAAAGAGAATCATGGCAATGTTTTCGACATACCCTTTGGTTGGATTACTCAATGTTGCCGTCTCATCTATCAAATGTGGAATGTGGGATAATATGTTTGATACGTCCCAAACCATTAGTCCACGTGAGTTGGCTAACACTGTAACTGATAATTATCCTGAACATGTCAAACAAAGTATAAAGGATGCACCACCAGTCAGCACCGAACATGCTACCGAACATGGACAAACCTCTTGCTGCCTGAAGCCATATCATCAGGATCGTCCACGTCGGTGGAGGAAGATCCCAAGGAGTCGTAAGAAGTTGGAGCCTGAAAACGGACACATCTGCTACCTTTGTCATCAAGAGGGACACGTCAAGAGAAGATGCCCTCTGCAGCAGCAAACTAAAAGATCATCAAATGAACCACAGAGTCCTCAACAATTGGCTCAGTTTTCTATGTCCGGAGAAGAGGTGGAGGAGAAAGTCAGTGCTGTGGTGGACGGTGTTTCAGTTAAAGAGATAATCAGGAAAGTTGCTACATATTTTGAGACTGATCACGGAATGTCTAGCAATGGTAAATCACTTCCGGAGAAGATATTTATTTACTTCAGAAAGCTTTGGAATTGTGAGCTCTGGTTGACTGAAGAATTTTCTGTCAAGGAATTTAGATCCCTTGGTTATGGGGAATTTATGATGTTTTTAGAAAAGTATGCCCGTCTTCTACCACCGGAGATGTGCAAGTTCTTGAAAGATGACAGCAGTGGAAAGTTTCCTTTGGAGGTTTGCATTCTTCCACATTATTTAGTTGTTTTGGTATCTCAAGCTTTAAACAATTTATGGGAGGACCAAAAGATTACCAAACTGAACATTTCTTCTCTGCTTGGGAAGCAGTTCCCGGCCCTTAGTTTCCATACCATTGAAAATGGTTCAGTAGAAGACTTTAAAAGTATAGTAGGAAAGCATAAAGACACTGCAATTTCCAAATGTGTACTATTTTCAATGACAATATGCAGAACTAGTTACACTTTAGAATCATTGGAAAACTCTAGTCAGAATGCTGTATTGAAAAGCAGTTTGGTGAGTGTTAACAGTGGCCAGAAAATAAGCAATCAATCTGTTGCATCCAAGGAGGCAATTGCAGTCTTACTTAGGGCACCCATGATGTCAGATTTGAATTTATGGTCACATTGGGACCTCTTATTTGCTCCCTCTCTTGGCCCTCTTGTACCGTGGTTATTGAATGAAGTCAACACAGATGAATTACTCTGTTTGGTAACCAAAGATGGCAAAGTTATTCGGTTAGATCATTCAGCTACTGTAGATTCATTCTCGAAAGCTGCTCTTCAAGGATCCTCTTTTCAAACAGCAGTGAAAATGTTATCTCTCTTTTCACTGGTTGGGGGAGAAAAACATGTCCCTGTGTCCCTTTTGAAATTCCATGTACAGCATGCATTTGAAGTTATTGTCAAGACCTATCTAGATGGTATGGAAGTATATGACAAGAAGAGTTCTCTTAATCAAGGAACAGTTTTGTGTGGACAGAAAATGGTTGTTGAAATTGCTGCTGGTAAATGCAGTAACTTACACAGAGCTGTAACGCAGACGAAAATTGCTGAGTCTGTTATATCACATTTTTTTCTTGATTGCCTGGGGTATCTACCTGCAGAGTTTCGCAGTTTTTCTGCTGATGTGTTACTTTCTGGGATGCGGTCTGTTTTTAAGCATGCGGCTTCAGCCATTTTGGATGAATGCATCCAAATAGAGCAGCGTCTCATACTTCATGAAGTTGGCTTATCTCTTGGTATAGTGGAGTGGATTAGTGATTACCATGTATTTAGTTCCTTGGATTCTACTGATTCGTTCATGTCTGAGGATTCTGGTCTCAATGCTGATAGAGATCAAATGGGGTCAGACTCAAAATATATGCAAAATGTGTCAAAAAAGTTGGCTGCTTCTGAACAGAGTATGGCTGCATCTGTTAGGGCAGTTGAGCATAAAGGAGGATGTGCTGATGTTAGCTGGATGGTTGATGGTGCAGGAGTTTCTGATGCTGGGATTGGCATTGGCGTTGGTTACAGACAACATCCTACTAATATTAATGAACATGAAGATGCTTTCCAGCATGCTCGCTTAGGGAGAGCTCTGCACTGTCTTTCACAGGAATTATATTCTCAAGATTCTCATTTTCTTCTTGAGCTGGTTCAAAATGCTGATGATAATACTTATCCAACAAATGTAGAACCAACTCTAGCATTCATTCTTCAAGAATCAGATCATCAGGTCACAGATGCTCCAGAAATTCATTCTAATGGATTTCATATCAAGTTTGATACAAGTGAGGGTCAGATTGGTTTAATTCTGCCCACAGTTGTACCTCCTTGCAATCTTGAGTTGTTTAGACAGCTGACATCTAGTGACATTGATAAACCAGATTGTTACTGCTGGAAAACTTGTATTGTTCTTCCTTTTAGATCGAAAGTATCAGATGGAACTGTCTTGAACCACATAATGAATATGTTTTCAGATCTTCATCCATCTTTACTACTCTTTCTTCACCGCCTCAAGTGTATCCGGTTTAGAAACCTAATCGATGATTCACTTACTGTCATGAGAAAAGAAATTGTAGGAGACGGTATTGTCAAGGTTTCACATGGGAATACGAAGATGACATGGTTTGTAGTATCTCAGAAATTGCACTCAGATAATCTTCGTAGTGATGTGCAAACAACAGAAATCTCAATTGCTTTTACGTTGAAGGAATCGGATAAGGGCATTTATCGTCCAGATATAGGCCAACAGCCTGTTTTTGCATTTCTTCCTCTTAGAACATATGGACTGAAATTTATTGTTCAGGGTGATTTTGTTCTTCCTTCATCGAGAGAGGAAGTGGATGGAGATAGTCCCTGGAACCAATGGCTATTGTCAGAATTTCCTGGTTTATTTGTTGATGCAGAGAAATCATTTTGTTCTCTTCCATGTTTCAAAGAGAATCCTGGGACTGCTGTGGCAGCTTACATGTCCTTTGTTCCACTTGTTGGGGAAGTGCATGGTTTCTTTTCTTGTCTTCCTCGATTAATTATTTCTAAATTACGGATGTCAAATTGCTTACTTCAGGAAGGAGAAAAGAAAGAATGGGTTCCTCCTTGCAAGGTCCTAAGAAATTGGAGTAAACAGGCTCGTTCACTTCTCCCTGATGGTCTACTGCATGAGCATCTTGGCCTTGGATTCTTGGATAGAGATATAGTTCTGCCTGATCCACTTGCAAGAGTTCTAGTCGTTGAAGGCCCAATTTGGCTACAGTTTGATGCCGTAGGGACTGGTTTTGGGGATCATCATGGACTTGAATCTTTTCCAAAGTTATATGGTAAACTTCGGATTGTAAGTCCGGAGCTCTATGCATCGTCTGCTGATATGCCATCCATGGATGTGACGCCAATTGACAAAGTCATTAGTATGCTCCATAGAATTGGTGTCCAACGGTTGTCCGCACACGAGATTCTCAAGGCTCACATCTTGCCAGCTATATCTGATGATAGAATTTCAGTTAGGGATGAAGATTTGATGACTGATTATATCTGCTTCGCAATGGTTCACTTACAGTCGAGCTGCTCTGATTGTCATGCTGAAAGGGAATACATCATATCAGAACTACAAAATAAAGCTTATATTCTAACTAATAATGGCTTTAAACGACCTGCTGAGGCATCAATTCATTTCAGTAAAGAATTTGGAAATCCAGTGGACATAAGTAGGTTGATTGGTAGGTTTCAAGTTGAGAAGGGTTTCACTGAGTTGTCTGAGGCTCTATTTAATAATCTAACTTTGGACCAGCACACTATTTCCCATGGGTTGAATGCCACAGATTGGGAATCACCTGAGTTAGTCCATTTATTATCCCTATTGTCCAAAGATGGCAACAGAAAAGGTTGTGAGTATCTCTTAGAGGTTCTCGATAAATTATGGGATGATTGCTATAGTGACAGAGCTACAGGGTACTGCTCTTCTAAGTCTGTTGCAGATAGAAAGCCCTTCAAATCTTCATTTATGAGCACCATCTGCGATGTGCAATGGGTAGTATCAGGAATGGATGATATACTTCACTATCCCAAGGATCTATATCACGACAGTGCTGCAGTGCGGTCAATTCTTGGTGGATCTGCCCCATTTTTTGTTCCTAAGGCTACCAGTGAAAAATTTGTATCTGATATTGGTTTTAAGACAAGAGTCTCTCTTCACGATGCTCTGGAGATGTTGAAACTATGGAGATGTGAGAATCCGTTTAGGGCCAGCCTAGCACAAATGTCCAAATTTTACTCATTAATCTGGAATGAAATGGCTTCTTCAAAGAAGACAACTGCAGAGGAATTCTGTTTGGAACCTTTTGTATTTGTTCCATATGAATCTAGCTTCCGGCATGAGGATGTGGTGTCTGGTACATTTCTGTCCCTTGAAGAAGTATACTGGGATGATTCTACTTTCTTTGTGGACCAAATCAAGGAGATCCATCATCAGTGCAACTCAACAGTTGGTAATCATGGCCCCATAAACAGGATTCTGAGTAATTTCTACCCGGCCCTTCATGACTTCTTTGTTGATATATGTGGAGTACATGAGATCCCTCCTCTTCGTAGCTACCTTCAGATTTTGCTTCAGTTTTCAAATGCTGTTTTGCCTTCACAAGCAGCTAATGCTGTTTTTCAAGTTTTTCAGAAGTGGGCTGATGGGCTCCAATCGGGAATGAGTGCTGAGGATATTGTATACTTGAAAGATTCTCTTACAAGGATGGAATGTACTGTGCTTCCTACTGTGCAGGATAAGTGGGTATCTCTACATCCTTCCTATGGTCTCCTGTGCTGGTGTGATGATAAGACGTTGAAGAAGCAGTTTATGCATATGGATGGACTTGATTTTCTTTACTCCAGTGGACTAAGTAATGATGATGAAGAGATCCTAAGTACAAAAATGTCCGTCCTCATGCGAACCTTAGGGATTTCTGCACTTTCAGAGGTTGTGACTCGTGAGGCGATGTTTAATGGTCCGACAGATTCTAGCTTTAAAGCTGCATTGCTGGATTGGGCTCTGCCATATGCGCAGCGCTACTTACATAGTTTACATCCTGATAAATATTCTCAACTCAAGCAGTCTGGATTCGATATACTAAATTGTTTGCGAGTAGTAGAAGTTCAAAAGCTGTCCTACCGCAATGTTATAAAGATTGCTGGAAGTGAATCCAAGAAGCAAATCGAATGTAGTTGTGTTCTGCAGGATCACGATCTGTATACAACCCAGGAATCAGATTCTCACGCATTATTTATGGAGCTTTCTCGTTTGTTTTTTGATGGAAAACCAGAATTACACTTGGCAAATTTCCTTCATATGATCACAACAATGGCTGAATCAGGTTCAACTGAGGAGCAGATAGACTTTTTTATCTTCAATAGCCAAAAGATGCCAAAGCTTCCTGATGGAGAATCTGTTTGGTCCCTGTCACATGTGCATAATGATAGGTTACCCCAGCCAAGTGACTGGCGCTTTGTCGGTTGGAAAGCCCCACTAAGCTTTGGTTATGCAAATCTTTTCAAGGCTCAGGCACAATTTGCAGAGCTTAGCAGTGTCTCACAAATTGAAATGGATAATGATTCTGAAACCCATGTCAGACAAACAGTTGAATCAACTCCCATTTCAGTCGACATTAAATGGACAATTGGTGAGGGTACAGCAACAACATCTGCACCTTTAGTGCTGCCAAACTCCAATGATTTGCAAGAACACTTTGATGATGAGACTGATATGGATACTGATTTCAATCCTAATAATCTAGATTTTGTTGTTGACCCTCGCGTTTTGGGTTCATCTGATTGTAGCAAGGTAGACCATCCTAGATATGGCTCTAGTGGAAGAGATGCAATGCGTGGAAGAGATGCAATGCTTACCGGGAGGTTAGGTGAGGTTGTTGCTTTTAAATACTTAATTGCAAAAGCTGGCAAGTCAGTTGTGAGGTGGGTTAATGAAAGAATTGAAACTGGGCTACCCTATGACATAGTTGTGGGTGAGAAGGAAGATAGTCTAGAGTTCATTGAGGTTAAAGCCACCCAACAACAAAAAAAGGATTGGTTCCACATATCAATGAGGGAGTGGCAATTTGCAGCGGAAAAAGGCGAAGCCTTCAGCATTTTGCACGTCCTCTTATTGGGTAATAATGCTGCAAGAGTCTCAGTTTACAAGAATCCTGTAAAATTGTGTCATCTGGGCAAGCTACAGTTGCATCTTTCGATGCCTAGGCAGGAGAAGGAATTATTTCTTGTGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3883

Protein Analysis

2901

Amino Acids

326.01

Weight (kDa)

5.88

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOV_C PF13020 2780 - 2866 1.9e-19 Protein NO VEIN, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08300 AT1G08300 AT1G08300 AT4G13750
fragaria_vesca FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_4g13620 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660
malus_domestica MD04G1012800.v1.1 MD04G1012900.v1.1 MD04G1013100.v1.1 MD04G1013300.v1.1
prunus_persica Prupe.1G159000_v2.0.a1 Prupe.1G159100_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G358100_v2.0.a1
pyrus_communis pycom04g01020 pycom04g01030
rosa_chinensis RchiOBHm_Chr4g0414341 RchiOBHm_Chr4g0414351 RchiOBHm_Chr6g0275261 RchiOBHm_Chr7g0213881 RchiOBHm_Chr7g0213891
rosa_laevigata RLG00000008153 RLG00000008155 RLG00000013477
rosa_multiflora Rmu_co8510163.1_g000001 Rmu_sc0004087.1_g000027 Rmu_sc0005196.1_g000014 Rmu_sc0005558.1_g000005 Rmu_sc0005558.1_g000006 Rmu_sc0008100.1_g000005 Rmu_sc0008560.1_g000005
rosa_roxburghii Rroxscaffold_5G00358210 Rroxscaffold_5G00358220 Rroxscaffold_7G00187920 Rroxscaffold_7G00187930 Rroxscaffold_7G00193450
rosa_rugosa Rorug04G0127100 Rorug04G0127200 Rorug04G0127300 Rorug04G0127400 Rorug06G0090600
rosa_samantha Rh4AG185200 Rh4AG185300 Rh4AG185500 Rh4BG184700 Rh4BG184800 Rh4CG198000 Rh4CG198100 Rh4DG182400 Rh4DG182600 Rh6AG204100 Rh6BG207000 Rh6CG209600 Rh6DG200000 Rh7AG277400 Rh7CG296400 Rh7CG296500
rosa_wichuraiana Rw4G015850 Rw4G015860 Rw6G017730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 423, 7604
AasI GACNNNNNNGTC 2 cut(s) 1235, 5030
AatII GACGTC 1 cut(s) 978
Acc16I TGCGCA 2 cut(s) 2204, 7485
Acc36I ACCTGC 2 cut(s) 4063, 6097
Acc65I GGTACC 1 cut(s) 1599
AccB1I GGYRCC 4 cut(s) 1129, 1599, 1822, 3547
AccB7I CCANNNNNTGG 2 cut(s) 5429, 6258
AccBSI CCGCTC 1 cut(s) 1085
AccI GTMKAC 7 cut(s) 482, 5593, 6852, 7152, 7673, 8082, 8265
AccII CGCG 3 cut(s) 1227, 1869, 8235
AccIII TCCGGA 3 cut(s) 2855, 2980, 5779
AcoI YGGCCR 2 cut(s) 752, 3487
AcvI CACGTG 1 cut(s) 2537
AcyI GRCGYC 3 cut(s) 975, 1130, 5825
AdeI CACNNNGTG 1 cut(s) 781
AfeI AGCGCT 1 cut(s) 7490
AflIII ACRYGT 6 cut(s) 485, 2575, 2764, 3805, 5409, 7885
AhlI ACTAGT 2 cut(s) 1513, 3410
AjiI CACGTC 4 cut(s) 486, 2681, 2767, 8575
AjnI CCWGG 9 cut(s) 146, 246, 432, 1262, 4041, 5297, 5326, 5386, 7680
AjuI GAANNNNNNNTTGG 2 cut(s) 3452, 3484
AleI CACNNNNGTG 2 cut(s) 2683, 6519
Alw21I GWGCWC 5 cut(s) 1194, 3027, 4537, 5787, 6446
AlwNI CAGNNNCTG 1 cut(s) 3710
Ama87I CYCGRG 1 cut(s) 1180
Aor13HI TCCGGA 3 cut(s) 2855, 2980, 5779
Aor51HI AGCGCT 1 cut(s) 7490
ArsI GACNNNNNNTTYG 8 cut(s) 2431, 2463, 2515, 2547, 3578, 3610, 7910, 7942
AseI ATTAAT 4 cut(s) 1956, 4491, 5468, 6713
Asp700I GAANNNNTTC 5 cut(s) 3284, 5529, 5742, 6176, 8691
Asp718I GGTACC 1 cut(s) 1599
AspA2I CCTAGG 1 cut(s) 8672
AspLEI GCGC 7 cut(s) 1132, 1285, 1871, 2205, 7486, 7491, 7926
AsuC2I CCSGG 4 cut(s) 554, 3290, 6965, 8329
AsuHPI GGTGA 9 cut(s) 806, 1343, 3484, 4940, 5261, 6258, 8114, 8351, 8456
AsuII TTCGAA 2 cut(s) 1411, 1699
AvaI CYCGRG 1 cut(s) 1180
AvrII CCTAGG 1 cut(s) 8672
AxyI CCTNAGG 3 cut(s) 1173, 6570, 7378
BaeGI GKGCMC 2 cut(s) 802, 3550
BaeI ACNNNNGTAYC 4 cut(s) 1911, 1944, 4749, 4782
BalI TGGCCA 2 cut(s) 754, 3489
BamHI GGATCC 1 cut(s) 3743
BanI GGYRCC 4 cut(s) 1129, 1599, 1822, 3547
BanII GRGCYC 5 cut(s) 3027, 4537, 5787, 7122, 7474
BauI CACGAG 2 cut(s) 5885, 7410
BbrPI CACGTG 1 cut(s) 2537
BbsI GAAGAC 5 cut(s) 2076, 3104, 3336, 5450, 6749
Bbv12I GWGCWC 5 cut(s) 1194, 3027, 4537, 5787, 6446
BbvCI CCTCAGC 3 cut(s) 2364, 6093, 7140
BceAI ACGGC 4 cut(s) 545, 1327, 2456, 5687
BcgI CGANNNNNNTGC 6 cut(s) 1171, 1205, 2418, 2452, 6506, 6540
BciT130I CCWGG 9 cut(s) 148, 248, 434, 1264, 4043, 5299, 5328, 5388, 7682
BciVI GTATCC 2 cut(s) 4973, 8182
BclI TGATCA 2 cut(s) 2947, 7773
BcnI CCSGG 4 cut(s) 554, 3290, 6965, 8329
BcuI ACTAGT 2 cut(s) 1513, 3410
BfoI RGCGCY 3 cut(s) 1133, 7492, 7927
BfuAI ACCTGC 2 cut(s) 4063, 6097
BfuI GTATCC 2 cut(s) 4973, 8182
BglII AGATCT 1 cut(s) 4918
BlnI CCTAGG 1 cut(s) 8672
BlpI GCTNAGC 1 cut(s) 8000
BmcAI AGTACT 1 cut(s) 25
BmeT110I CYCGRG 1 cut(s) 1180
BmgBI CACGTC 4 cut(s) 486, 2681, 2767, 8575
BmrI ACTGGG 4 cut(s) 798, 805, 6865, 8427
BmuI ACTGGG 4 cut(s) 798, 805, 6865, 8427
BoxI GACNNNNGTC 1 cut(s) 6617
BpiI GAAGAC 5 cut(s) 2076, 3104, 3336, 5450, 6749
BplI GAGNNNNNCTC 2 cut(s) 1176, 1208
BpmI CTGGAG 4 cut(s) 1178, 4671, 6659, 7297
Bpu10I CCTNAGC 5 cut(s) 2364, 4525, 6093, 7140, 7980
Bpu1102I GCTNAGC 1 cut(s) 8000
Bpu14I TTCGAA 2 cut(s) 1411, 1699
BpuEI CTTGAG 8 cut(s) 873, 3198, 4551, 4607, 4802, 4940, 5879, 7514
BpuMI CCSGG 4 cut(s) 554, 3290, 6965, 8329
Bsa29I ATCGAT 1 cut(s) 4983
BsaAI YACGTR 1 cut(s) 2537
BsaBI GATNNNNATC 7 cut(s) 423, 2565, 4290, 4923, 6510, 7665, 8199
BsaHI GRCGYC 3 cut(s) 975, 1130, 5825
BsaI GGTCTC 2 cut(s) 4280, 7244
BsaWI WCCGGW 5 cut(s) 2855, 2980, 3121, 4965, 5779
Bse21I CCTNAGG 3 cut(s) 1173, 6570, 7378
Bse3DI GCAATG 9 cut(s) 1393, 2436, 2971, 5985, 6467, 7457, 7603, 8307, 8325
Bse8I GATNNNNATC 7 cut(s) 423, 2565, 4290, 4923, 6510, 7665, 8199
BseAI TCCGGA 3 cut(s) 2855, 2980, 5779
BseBI CCWGG 9 cut(s) 148, 248, 434, 1264, 4043, 5299, 5328, 5388, 7682
BseCI ATCGAT 1 cut(s) 4983
BseJI GATNNNNATC 7 cut(s) 423, 2565, 4290, 4923, 6510, 7665, 8199
BseMI GCAATG 9 cut(s) 1393, 2436, 2971, 5985, 6467, 7457, 7603, 8307, 8325
BseRI GAGGAG 8 cut(s) 801, 1000, 1589, 1825, 2090, 2885, 7005, 7820
BseSI GKGCMC 2 cut(s) 802, 3550
BseYI CCCAGC 2 cut(s) 4445, 7908
BsgI GTGCAG 6 cut(s) 1779, 4449, 4523, 7223, 7374, 8109
Bsh1236I CGCG 3 cut(s) 1227, 1869, 8235
BshNI GGYRCC 4 cut(s) 1129, 1599, 1822, 3547
BshVI ATCGAT 1 cut(s) 4983
BsiHKAI GWGCWC 5 cut(s) 1194, 3027, 4537, 5787, 6446
BsiHKCI CYCGRG 1 cut(s) 1180
BsmBI CGTCTC 5 cut(s) 1261, 1350, 2479, 4169, 5016
BsmI GAATGC 5 cut(s) 3180, 3454, 4148, 4646, 6253
Bso31I GGTCTC 2 cut(s) 4280, 7244
BsoBI CYCGRG 1 cut(s) 1180
Bsp119I TTCGAA 2 cut(s) 1411, 1699
Bsp1286I GDGCHC 9 cut(s) 802, 1194, 3027, 3550, 4537, 5787, 6446, 7122, 7474
Bsp13I TCCGGA 3 cut(s) 2855, 2980, 5779
Bsp1407I TGTACA 2 cut(s) 58, 3835
Bsp1720I GCTNAGC 1 cut(s) 8000
Bsp19I CCATGG 3 cut(s) 1990, 5814, 6238
Bsp68I TCGCGA 1 cut(s) 1227
BspDI ATCGAT 1 cut(s) 4983
BspEI TCCGGA 3 cut(s) 2855, 2980, 5779
BspFNI CGCG 3 cut(s) 1227, 1869, 8235
BspHI TCATGA 3 cut(s) 4174, 5001, 6973
BspMAI CTGCAG 5 cut(s) 2790, 4060, 6529, 6754, 7659
BspMI ACCTGC 2 cut(s) 4063, 6097
BspQI GCTCTTC 4 cut(s) 1473, 2238, 3741, 6400
BspT104I TTCGAA 2 cut(s) 1411, 1699
BspT107I GGYRCC 4 cut(s) 1129, 1599, 1822, 3547
BspTNI GGTCTC 2 cut(s) 4280, 7244
BsrBI CCGCTC 1 cut(s) 1085
BsrDI GCAATG 9 cut(s) 1393, 2436, 2971, 5985, 6467, 7457, 7603, 8307, 8325
BsrGI TGTACA 2 cut(s) 58, 3835
BssNAI GTATAC 3 cut(s) 6853, 7153, 7674
BssNI GRCGYC 3 cut(s) 975, 1130, 5825
BssSI CACGAG 2 cut(s) 5885, 7410
Bst1107I GTATAC 3 cut(s) 6853, 7153, 7674
Bst2BI CACGAG 2 cut(s) 5885, 7410
Bst2UI CCWGG 9 cut(s) 148, 248, 434, 1264, 4043, 5299, 5328, 5388, 7682
BstACI GRCGYC 3 cut(s) 975, 1130, 5825
BstAPI GCANNNNNTGC 5 cut(s) 5798, 6450, 7082, 7282, 7991
BstAUI TGTACA 2 cut(s) 58, 3835
BstBAI YACGTR 1 cut(s) 2537
BstBI TTCGAA 2 cut(s) 1411, 1699
BstDSI CCRYGG 4 cut(s) 1990, 3623, 5814, 6238
BstEII GGTNACC 2 cut(s) 3667, 7902
BstFNI CGCG 3 cut(s) 1227, 1869, 8235
BstH2I RGCGCY 3 cut(s) 1133, 7492, 7927
BstHHI GCGC 7 cut(s) 1132, 1285, 1871, 2205, 7486, 7491, 7926
BstNI CCWGG 9 cut(s) 148, 248, 434, 1264, 4043, 5299, 5328, 5388, 7682
BstPAI GACNNNNGTC 1 cut(s) 6617
BstPI GGTNACC 2 cut(s) 3667, 7902
BstSLI GKGCMC 2 cut(s) 802, 3550
BstUI CGCG 3 cut(s) 1227, 1869, 8235
BstV2I GAAGAC 5 cut(s) 2076, 3104, 3336, 5450, 6749
BstX2I RGATCY 9 cut(s) 2694, 3062, 3743, 4918, 6505, 6548, 6894, 7008, 7341
BstXI CCANNNNNNTGG 4 cut(s) 1997, 2685, 5861, 7920
BstYI RGATCY 9 cut(s) 2694, 3062, 3743, 4918, 6505, 6548, 6894, 7008, 7341
BstZ17I GTATAC 3 cut(s) 6853, 7153, 7674
Bsu15I ATCGAT 1 cut(s) 4983
Bsu36I CCTNAGG 3 cut(s) 1173, 6570, 7378
BsuI GTATCC 2 cut(s) 4973, 8182
BsuTUI ATCGAT 1 cut(s) 4983
BtgI CCRYGG 4 cut(s) 1990, 3623, 5814, 6238
BtgZI GCGATG 3 cut(s) 213, 6468, 7433
BtrI CACGTC 4 cut(s) 486, 2681, 2767, 8575
BtsI GCAGTG 6 cut(s) 500, 3160, 3363, 3768, 6534, 8011
BtuMI TCGCGA 1 cut(s) 1227
BveI ACCTGC 2 cut(s) 4063, 6097
CaiI CAGNNNCTG 1 cut(s) 3710
CciI TCATGA 3 cut(s) 4174, 5001, 6973
CfoI GCGC 7 cut(s) 1132, 1285, 1871, 2205, 7486, 7491, 7926
ClaI ATCGAT 1 cut(s) 4983
CseI GACGC 2 cut(s) 4151, 5833
CsiI ACCWGGT 3 cut(s) 146, 246, 432
CspCI CAANNNNNGTGG 4 cut(s) 1500, 1535, 2523, 2558
DinI GGCGCC 1 cut(s) 1131
DraI TTTAAA 6 cut(s) 873, 3222, 3337, 6082, 7450, 8356
DraIII CACNNNGTG 1 cut(s) 781
DrdI GACNNNNNNGTC 2 cut(s) 1235, 5030
DseDI GACNNNNNNGTC 2 cut(s) 1235, 5030
EaeI YGGCCR 2 cut(s) 752, 3487
EciI GGCGGA 1 cut(s) 886
Ecl136II GAGCTC 3 cut(s) 3025, 4535, 5785
Eco24I GRGCYC 5 cut(s) 3027, 4537, 5787, 7122, 7474
Eco31I GGTCTC 2 cut(s) 4280, 7244
Eco32I GATATC 1 cut(s) 1566
Eco47III AGCGCT 1 cut(s) 7490
Eco53kI GAGCTC 3 cut(s) 3025, 4535, 5785
Eco72I CACGTG 1 cut(s) 2537
Eco81I CCTNAGG 3 cut(s) 1173, 6570, 7378
Eco88I CYCGRG 1 cut(s) 1180
Eco91I GGTNACC 2 cut(s) 3667, 7902
EcoICRI GAGCTC 3 cut(s) 3025, 4535, 5785
EcoO109I RGGNCCY 5 cut(s) 581, 1177, 1493, 3586, 5545
EcoO65I GGTNACC 2 cut(s) 3667, 7902
EcoRI GAATTC 3 cut(s) 1153, 1695, 6758
EcoRII CCWGG 9 cut(s) 146, 246, 432, 1262, 4041, 5297, 5326, 5386, 7680
EcoRV GATATC 1 cut(s) 1566
EcoT22I ATGCAT 5 cut(s) 1387, 3847, 4148, 5794, 7287
EcoT38I GRGCYC 5 cut(s) 3027, 4537, 5787, 7122, 7474
EgeI GGCGCC 1 cut(s) 1131
EheI GGCGCC 1 cut(s) 1131
Esp3I CGTCTC 5 cut(s) 1261, 1350, 2479, 4169, 5016
FauI CCCGC 3 cut(s) 695, 997, 1146
FauNDI CATATG 5 cut(s) 5224, 6790, 7287, 7480, 7770
FbaI TGATCA 2 cut(s) 2947, 7773
FblI GTMKAC 7 cut(s) 482, 5593, 6852, 7152, 7673, 8082, 8265
FriOI GRGCYC 5 cut(s) 3027, 4537, 5787, 7122, 7474
FspI TGCGCA 2 cut(s) 2204, 7485
GlaI GCGC 7 cut(s) 1131, 1284, 1870, 2204, 7485, 7490, 7925
GsaI CCCAGC 2 cut(s) 4449, 7912
GsuI CTGGAG 4 cut(s) 1178, 4671, 6659, 7297
HaeII RGCGCY 3 cut(s) 1133, 7492, 7927
HgaI GACGC 2 cut(s) 4151, 5833
HhaI GCGC 7 cut(s) 1132, 1285, 1871, 2205, 7486, 7491, 7926
Hin1I GRCGYC 3 cut(s) 975, 1130, 5825
Hin6I GCGC 7 cut(s) 1130, 1283, 1869, 2203, 7484, 7489, 7924
HinP1I GCGC 7 cut(s) 1130, 1283, 1869, 2203, 7484, 7489, 7924
HincII GTYRAC 9 cut(s) 153, 253, 454, 483, 3033, 3481, 3643, 8083, 8227
HindII GTYRAC 9 cut(s) 153, 253, 454, 483, 3033, 3481, 3643, 8083, 8227
HindIII AAGCTT 8 cut(s) 891, 1220, 1688, 3008, 3216, 6054, 7850, 7951
HpaI GTTAAC 4 cut(s) 153, 253, 454, 3481
HphI GGTGA 9 cut(s) 806, 1343, 3484, 4940, 5261, 6258, 8114, 8351, 8456
Hpy99I CGWCG 3 cut(s) 487, 1232, 2685
Hsp92I GRCGYC 3 cut(s) 975, 1130, 5825
HspAI GCGC 7 cut(s) 1130, 1283, 1869, 2203, 7484, 7489, 7924
KasI GGCGCC 1 cut(s) 1129
Kpn2I TCCGGA 3 cut(s) 2855, 2980, 5779
KpnI GGTACC 1 cut(s) 1603
Ksp22I TGATCA 2 cut(s) 2947, 7773
KspAI GTTAAC 4 cut(s) 153, 253, 454, 3481
LguI GCTCTTC 4 cut(s) 1473, 2238, 3741, 6400
MabI ACCWGGT 3 cut(s) 146, 246, 432
MbiI CCGCTC 1 cut(s) 1085
MfeI CAATTG 6 cut(s) 2295, 2834, 3528, 5133, 5829, 8097
MflI RGATCY 9 cut(s) 2694, 3062, 3743, 4918, 6505, 6548, 6894, 7008, 7341
MhlI GDGCHC 9 cut(s) 802, 1194, 3027, 3550, 4537, 5787, 6446, 7122, 7474
MlsI TGGCCA 2 cut(s) 754, 3489
MluNI TGGCCA 2 cut(s) 754, 3489
Mly113I GGCGCC 1 cut(s) 1130
MlyI GAGTC 9 cut(s) 584, 2006, 2713, 2833, 4019, 4301, 6627, 7402, 8613
MmeI TCCRAC 9 cut(s) 519, 985, 1384, 2434, 2697, 4646, 5893, 7457, 7916
Mox20I TGGCCA 2 cut(s) 754, 3489
Mph1103I ATGCAT 5 cut(s) 1387, 3847, 4148, 5794, 7287
MroI TCCGGA 3 cut(s) 2855, 2980, 5779
MroXI GAANNNNTTC 5 cut(s) 3284, 5529, 5742, 6176, 8691
MscI TGGCCA 2 cut(s) 754, 3489
Msp20I TGGCCA 2 cut(s) 754, 3489
MspA1I CMGCKG 2 cut(s) 4798, 8543
MteI GCGCNGCGC 1 cut(s) 7487
MunI CAATTG 6 cut(s) 2295, 2834, 3528, 5133, 5829, 8097
Mva1269I GAATGC 5 cut(s) 3180, 3454, 4148, 4646, 6253
MvaI CCWGG 9 cut(s) 148, 248, 434, 1264, 4043, 5299, 5328, 5388, 7682
MvnI CGCG 3 cut(s) 1227, 1869, 8235
NarI GGCGCC 1 cut(s) 1130
NciI CCSGG 4 cut(s) 554, 3290, 6965, 8329
NcoI CCATGG 3 cut(s) 1990, 5814, 6238
NdeI CATATG 5 cut(s) 5224, 6790, 7287, 7480, 7770
NmeAIII GCCGAG 2 cut(s) 1238, 1333
NruI TCGCGA 1 cut(s) 1227
NsbI TGCGCA 2 cut(s) 2204, 7485
NsiI ATGCAT 5 cut(s) 1387, 3847, 4148, 5794, 7287
NspV TTCGAA 2 cut(s) 1411, 1699
OliI CACNNNNGTG 2 cut(s) 2683, 6519
PaeI GCATGC 4 cut(s) 1724, 3845, 4121, 4520
PagI TCATGA 3 cut(s) 4174, 5001, 6973
PciI ACATGT 4 cut(s) 2575, 3805, 5409, 7885
PciSI GCTCTTC 4 cut(s) 1473, 2238, 3741, 6400
PcsI WCGNNNNNNNCGW 1 cut(s) 1131
PctI GAATGC 5 cut(s) 3180, 3454, 4148, 4646, 6253
PdmI GAANNNNTTC 5 cut(s) 3284, 5529, 5742, 6176, 8691
PflFI GACNNNGTC 3 cut(s) 134, 434, 5837
PflMI CCANNNNNTGG 2 cut(s) 5429, 6258
PleI GAGTC 9 cut(s) 584, 2006, 2712, 2832, 4018, 4301, 6626, 7402, 8612
PluTI GGCGCC 1 cut(s) 1133
PmaCI CACGTG 1 cut(s) 2537
PmlI CACGTG 1 cut(s) 2537
PpsI GAGTC 9 cut(s) 584, 2006, 2712, 2832, 4018, 4301, 6626, 7402, 8612
Ppu21I YACGTR 1 cut(s) 2537
PpuMI RGGWCCY 4 cut(s) 1177, 1493, 3586, 5545
PscI ACATGT 4 cut(s) 2575, 3805, 5409, 7885
PshAI GACNNNNGTC 1 cut(s) 6617
PshBI ATTAAT 4 cut(s) 1956, 4491, 5468, 6713
PsiI TTATAA 2 cut(s) 423, 7604
Psp124BI GAGCTC 3 cut(s) 3027, 4537, 5787
Psp5II RGGWCCY 4 cut(s) 1177, 1493, 3586, 5545
Psp6I CCWGG 9 cut(s) 146, 246, 432, 1262, 4041, 5297, 5326, 5386, 7680
PspCI CACGTG 1 cut(s) 2537
PspEI GGTNACC 2 cut(s) 3667, 7902
PspFI CCCAGC 2 cut(s) 4445, 7908
PspGI CCWGG 9 cut(s) 146, 246, 432, 1262, 4041, 5297, 5326, 5386, 7680
PspPPI RGGWCCY 4 cut(s) 1177, 1493, 3586, 5545
PsrI GAACNNNNNNTAC 2 cut(s) 7560, 7592
PstI CTGCAG 5 cut(s) 2790, 4060, 6529, 6754, 7659
PstNI CAGNNNCTG 1 cut(s) 3710
PsuI RGATCY 9 cut(s) 2694, 3062, 3743, 4918, 6505, 6548, 6894, 7008, 7341
PsyI GACNNNGTC 3 cut(s) 134, 434, 5837
PvuII CAGCTG 1 cut(s) 4798
RruI TCGCGA 1 cut(s) 1227
SacI GAGCTC 3 cut(s) 3027, 4537, 5787
SalI GTCGAC 2 cut(s) 481, 8081
SapI GCTCTTC 4 cut(s) 1473, 2238, 3741, 6400
ScaI AGTACT 1 cut(s) 25
SchI GAGTC 9 cut(s) 584, 2006, 2713, 2833, 4019, 4301, 6627, 7402, 8613
SduI GDGCHC 9 cut(s) 802, 1194, 3027, 3550, 4537, 5787, 6446, 7122, 7474
SexAI ACCWGGT 3 cut(s) 146, 246, 432
SfoI GGCGCC 1 cut(s) 1131
SfuI TTCGAA 2 cut(s) 1411, 1699
SmlI CTYRAG 8 cut(s) 888, 3213, 4566, 4586, 4781, 4955, 5894, 7529
SmoI CTYRAG 8 cut(s) 888, 3213, 4566, 4586, 4781, 4955, 5894, 7529
SpeI ACTAGT 2 cut(s) 1513, 3410
SphI GCATGC 4 cut(s) 1724, 3845, 4121, 4520
SspDI GGCGCC 1 cut(s) 1129
SspI AATATT 4 cut(s) 1526, 1704, 4489, 7520
SstI GAGCTC 3 cut(s) 3027, 4537, 5787
TatI WGTACW 7 cut(s) 23, 58, 3382, 3835, 7000, 7184, 7349
TauI GCSGC 6 cut(s) 928, 931, 934, 1244, 1852, 4124
TspGWI ACGGA 7 cut(s) 489, 1390, 2745, 2967, 5500, 6660, 7351
Tth111I GACNNNGTC 3 cut(s) 134, 434, 5837
Van91I CCANNNNNTGG 2 cut(s) 5429, 6258
VspI ATTAAT 4 cut(s) 1956, 4491, 5468, 6713
XbaI TCTAGA 3 cut(s) 3871, 8212, 8461
XcmI CCANNNNNNNNNTGG 3 cut(s) 785, 1997, 8276
XmaJI CCTAGG 1 cut(s) 8672
XmiI GTMKAC 7 cut(s) 482, 5593, 6852, 7152, 7673, 8082, 8265
XmnI GAANNNNTTC 5 cut(s) 3284, 5529, 5742, 6176, 8691
ZraI GACGTC 1 cut(s) 976
ZrmI AGTACT 1 cut(s) 25
Zsp2I ATGCAT 5 cut(s) 1387, 3847, 4148, 5794, 7287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.