RchiOBHm_Chr7g0213881

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000582
Physical Location & Seq
Forward (+)
30984405 .. 30985803
1399 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19140

Sequence Viewer

Length: 969 bp
ATGATTTTGCATCTCCTTTTATTACAAATTGTATTGCTCACGCTTACTATTTTTTATTTTTTCTGTGCCAGCCTAGCACAAATGTCCAAATTTTACTCATTAATCTGGAATGAAATGGCTTCTTCAAAGAAGACAACTGCAGAGGAATTCTGTTTGGAACCTTTTGTATTTGTTCCATATGAATCTAGCTTCCGGCATGAGGATGTGGTGTCTGGTACATTTCTGTCCCTTGAAGAAGTATACTGGGATGATTCTACTTTCTTTGTGGACCAAATCAAGGAGATCCATCATCAGTGCAACTCAACAGTTGGTAATCATGGCGGCCCCATAAACAGGATTCTGAGTAATTTCTACCCGGCCCTTCATGAATTCTTTGTTGATATATGTGGAGTTTTTCAAGTTTTTCGGAAGTGGGCTGATGGGCTCCAATCAGGAATGAGTGCTGAGGATATTGTATACTTGAAAGATTCTCTTACAAGGATGGAATGTACTGTGCTTCCTACTGTACAGGATAAGTGGGTATCTCTACATCCTTCCTATGGTCTCCTGTGCTGGTGTGATGATAAGAAGTTGAAGAAGCAGTTTATGCATATGGATGGACTTGATTTTCTTTACTCTGGTGGACTAAGTAATGATGATGAAGAGACCCTAAGTGCAAAAATGTCCGTCCTCATGCGAAACTTAGGGATTCCTGCACTTTCAAAGGTTGTGACTCGTGAGGCGATGTTTAATGGTCCGACAGAATCTAGCTTTAAAGCTGCATTGCTGGATTGGGCTCTGCCATATGCGCAACGCTTCTTACATAGTTTACATCCTGATAAATATTCTCAACTCAAGCAGTCTGGATTCGATATACTAAATCGTTTGCGAGTAGTAGAAGTTAAAAAGCTGTCCTACCGCAATGTTATAAAGATTGCTGGAAGTGAATCCAAGAAGCAAATCGAATGTAGTTGTGTTCTGCAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3883

Protein Analysis

322

Amino Acids

36.87

Weight (kDa)

5.94

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08300 AT1G08300 AT1G08300 AT4G13750
fragaria_vesca FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_4g13620 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660
malus_domestica MD04G1012800.v1.1 MD04G1012900.v1.1 MD04G1013100.v1.1 MD04G1013300.v1.1
prunus_persica Prupe.1G159000_v2.0.a1 Prupe.1G159100_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G358100_v2.0.a1
pyrus_communis pycom04g01020 pycom04g01030
rosa_chinensis RchiOBHm_Chr4g0414341 RchiOBHm_Chr4g0414351 RchiOBHm_Chr6g0275261 RchiOBHm_Chr7g0213881 RchiOBHm_Chr7g0213891
rosa_laevigata RLG00000008153 RLG00000008155 RLG00000013477
rosa_multiflora Rmu_co8510163.1_g000001 Rmu_sc0004087.1_g000027 Rmu_sc0005196.1_g000014 Rmu_sc0005558.1_g000005 Rmu_sc0005558.1_g000006 Rmu_sc0008100.1_g000005 Rmu_sc0008560.1_g000005
rosa_roxburghii Rroxscaffold_5G00358210 Rroxscaffold_5G00358220 Rroxscaffold_7G00187920 Rroxscaffold_7G00187930 Rroxscaffold_7G00193450
rosa_rugosa Rorug04G0127100 Rorug04G0127200 Rorug04G0127300 Rorug04G0127400 Rorug06G0090600
rosa_samantha Rh4AG185200 Rh4AG185300 Rh4AG185500 Rh4BG184700 Rh4BG184800 Rh4CG198000 Rh4CG198100 Rh4DG182400 Rh4DG182600 Rh6AG204100 Rh6BG207000 Rh6CG209600 Rh6DG200000 Rh7AG277400 Rh7CG296400 Rh7CG296500
rosa_wichuraiana Rw4G015850 Rw4G015860 Rw6G017730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 908
Acc16I TGCGCA 1 cut(s) 789
Acc36I ACCTGC 1 cut(s) 952
AccI GTMKAC 2 cut(s) 240, 456
AciI CCGC 2 cut(s) 321, 898
AclWI GGATC 1 cut(s) 277
AcsI RAATTY 3 cut(s) 89, 146, 368
AfaI GTAC 3 cut(s) 217, 490, 507
AfiI CCNNNNNNNGG 4 cut(s) 199, 277, 333, 539
AgsI TTSAA 6 cut(s) 126, 233, 398, 463, 574, 702
AluBI AGCT 4 cut(s) 189, 750, 758, 889
AluI AGCT 4 cut(s) 189, 750, 758, 889
Alw26I GTCTC 2 cut(s) 548, 638
AlwI GGATC 1 cut(s) 277
AoxI GGCC 2 cut(s) 322, 357
ApeKI GCWGC 1 cut(s) 758
ApoI RAATTY 3 cut(s) 89, 146, 368
AseI ATTAAT 1 cut(s) 101
AspLEI GCGC 1 cut(s) 790
AspS9I GGNCC 4 cut(s) 268, 323, 358, 734
AsuC2I CCSGG 1 cut(s) 356
AvaII GGWCC 2 cut(s) 268, 734
BanII GRGCYC 2 cut(s) 426, 778
BauI CACGAG 1 cut(s) 714
BbsI GAAGAC 1 cut(s) 137
BbvCI CCTCAGC 1 cut(s) 444
BbvI GCAGC 1 cut(s) 745
BccI CCATC 4 cut(s) 294, 413, 475, 590
BcnI CCSGG 1 cut(s) 356
BcoDI GTCTC 2 cut(s) 548, 638
BfaI CTAG 3 cut(s) 74, 186, 747
BfmI CTRYAG 2 cut(s) 138, 959
BfuAI ACCTGC 1 cut(s) 952
BisI GCNGC 2 cut(s) 322, 759
BlsI GCNGC 2 cut(s) 323, 760
Bme1390I CCNGG 1 cut(s) 356
Bme18I GGWCC 2 cut(s) 268, 734
BmgT120I GGNCC 4 cut(s) 268, 323, 358, 734
BmiI GGNNCC 3 cut(s) 159, 325, 425
BmrFI CCNGG 1 cut(s) 356
BmrI ACTGGG 1 cut(s) 253
BmsI GCATC 1 cut(s) 19
BmuI ACTGGG 1 cut(s) 253
BpiI GAAGAC 1 cut(s) 137
Bpu10I CCTNAGC 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 818
BpuMI CCSGG 1 cut(s) 356
BsaI GGTCTC 2 cut(s) 548, 638
Bsc4I CCNNNNNNNGG 4 cut(s) 199, 277, 333, 539
Bse1I ACTGG 1 cut(s) 248
Bse3DI GCAATG 2 cut(s) 761, 907
BseGI GGATG 6 cut(s) 208, 253, 486, 529, 601, 811
BseLI CCNNNNNNNGG 4 cut(s) 199, 277, 333, 539
BseMI GCAATG 2 cut(s) 761, 907
BseMII CTCAG 2 cut(s) 332, 435
BseNI ACTGG 1 cut(s) 248
BseXI GCAGC 1 cut(s) 745
BsgI GTGCAG 1 cut(s) 678
BshFI GGCC 2 cut(s) 324, 359
BsiSI CCGG 2 cut(s) 193, 356
BslFI GGGAC 1 cut(s) 211
BslI CCNNNNNNNGG 4 cut(s) 199, 277, 333, 539
BsmAI GTCTC 2 cut(s) 548, 638
BsmFI GGGAC 1 cut(s) 211
BsnI GGCC 2 cut(s) 324, 359
Bso31I GGTCTC 2 cut(s) 548, 638
Bsp1286I GDGCHC 2 cut(s) 426, 778
Bsp1407I TGTACA 1 cut(s) 505
Bsp143I GATC 1 cut(s) 282
BspACI CCGC 2 cut(s) 321, 898
BspANI GGCC 2 cut(s) 324, 359
BspCNI CTCAG 2 cut(s) 333, 436
BspHI TCATGA 1 cut(s) 364
BspLI GGNNCC 3 cut(s) 159, 325, 425
BspMAI CTGCAG 2 cut(s) 142, 963
BspMI ACCTGC 1 cut(s) 952
BspPI GGATC 1 cut(s) 277
BspTNI GGTCTC 2 cut(s) 548, 638
BsrDI GCAATG 2 cut(s) 761, 907
BsrGI TGTACA 1 cut(s) 505
BsrI ACTGG 1 cut(s) 248
BssMI GATC 1 cut(s) 282
BssNAI GTATAC 2 cut(s) 241, 457
BssSI CACGAG 1 cut(s) 714
Bst1107I GTATAC 2 cut(s) 241, 457
Bst2BI CACGAG 1 cut(s) 714
Bst4CI ACNGT 3 cut(s) 307, 493, 505
Bst6I CTCTTC 1 cut(s) 636
BstAPI GCANNNNNTGC 1 cut(s) 586
BstAUI TGTACA 1 cut(s) 505
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 5 cut(s) 341, 444, 626, 650, 682
BstF5I GGATG 6 cut(s) 208, 253, 486, 529, 601, 811
BstHHI GCGC 1 cut(s) 790
BstKTI GATC 1 cut(s) 285
BstMAI GTCTC 2 cut(s) 548, 638
BstMBI GATC 1 cut(s) 282
BstMWI GCNNNNNNNGC 3 cut(s) 74, 586, 787
BstSCI CCNGG 1 cut(s) 354
BstSFI CTRYAG 2 cut(s) 138, 959
BstV1I GCAGC 1 cut(s) 745
BstV2I GAAGAC 1 cut(s) 137
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BstZ17I GTATAC 2 cut(s) 241, 457
BsuRI GGCC 2 cut(s) 324, 359
BtgZI GCGATG 1 cut(s) 737
BtsCI GGATG 6 cut(s) 208, 253, 486, 529, 601, 811
BtsIMutI CAGTG 1 cut(s) 299
BveI ACCTGC 1 cut(s) 952
Cac8I GCNNGC 1 cut(s) 70
CciI TCATGA 1 cut(s) 364
CfoI GCGC 1 cut(s) 790
Cfr13I GGNCC 4 cut(s) 268, 323, 358, 734
Csp6I GTAC 3 cut(s) 216, 489, 506
CviAII CATG 4 cut(s) 197, 317, 365, 673
CviQI GTAC 3 cut(s) 216, 489, 506
DdeI CTNAG 5 cut(s) 341, 444, 626, 650, 682
DpnI GATC 1 cut(s) 284
DpnII GATC 1 cut(s) 282
DraI TTTAAA 1 cut(s) 754
Eam1104I CTCTTC 1 cut(s) 636
EarI CTCTTC 1 cut(s) 636
Eco24I GRGCYC 2 cut(s) 426, 778
Eco31I GGTCTC 2 cut(s) 548, 638
Eco47I GGWCC 2 cut(s) 268, 734
EcoRI GAATTC 2 cut(s) 146, 368
EcoT22I ATGCAT 1 cut(s) 591
EcoT38I GRGCYC 2 cut(s) 426, 778
FaeI CATG 4 cut(s) 200, 320, 368, 676
FalI AAGNNNNNCTT 2 cut(s) 456, 488
FaqI GGGAC 1 cut(s) 211
FatI CATG 4 cut(s) 196, 316, 364, 672
FauNDI CATATG 3 cut(s) 178, 591, 784
FblI GTMKAC 2 cut(s) 240, 456
Fnu4HI GCNGC 2 cut(s) 322, 759
FokI GGATG 6 cut(s) 215, 260, 493, 516, 608, 798
FriOI GRGCYC 2 cut(s) 426, 778
Fsp4HI GCNGC 2 cut(s) 322, 759
FspBI CTAG 3 cut(s) 74, 186, 747
FspI TGCGCA 1 cut(s) 789
GlaI GCGC 1 cut(s) 789
GluI GCNGC 2 cut(s) 322, 759
HaeIII GGCC 2 cut(s) 324, 359
HapII CCGG 2 cut(s) 193, 356
HhaI GCGC 1 cut(s) 790
Hin1II CATG 4 cut(s) 200, 320, 368, 676
Hin6I GCGC 1 cut(s) 788
HinP1I GCGC 1 cut(s) 788
HinfI GANTC 9 cut(s) 182, 251, 337, 467, 688, 712, 743, 846, 926
HpaII CCGG 2 cut(s) 193, 356
Hpy166II GTNNAC 5 cut(s) 241, 268, 457, 623, 809
Hpy188I TCNGA 3 cut(s) 342, 408, 738
Hpy188III TCNNGA 6 cut(s) 106, 365, 432, 716, 815, 843
Hpy8I GTNNAC 5 cut(s) 241, 268, 457, 623, 809
HpyAV CCTTC 2 cut(s) 371, 543
HpyCH4III ACNGT 3 cut(s) 307, 493, 505
HpyCH4V TGCA 8 cut(s) 10, 140, 297, 589, 656, 695, 761, 961
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 586, 787
HpyF3I CTNAG 5 cut(s) 341, 444, 626, 650, 682
Hsp92II CATG 4 cut(s) 200, 320, 368, 676
HspAI GCGC 1 cut(s) 788
Kzo9I GATC 1 cut(s) 282
LmnI GCTCC 1 cut(s) 429
Lsp1109I GCAGC 1 cut(s) 745
LweI GCATC 1 cut(s) 19
MaeI CTAG 3 cut(s) 74, 186, 747
MaeIII GTNAC 1 cut(s) 709
MalI GATC 1 cut(s) 284
MboI GATC 1 cut(s) 282
MboII GAAGA 5 cut(s) 114, 142, 245, 586, 653
MflI RGATCY 1 cut(s) 282
MhlI GDGCHC 2 cut(s) 426, 778
MluCI AATT 5 cut(s) 27, 89, 146, 346, 368
MlyI GAGTC 1 cut(s) 706
MmeI TCCRAC 1 cut(s) 761
MnlI CCTC 5 cut(s) 136, 193, 439, 680, 712
Mph1103I ATGCAT 1 cut(s) 591
MseI TTAA 4 cut(s) 101, 729, 753, 882
MslI CAYNNNNRTG 2 cut(s) 201, 594
MspI CCGG 2 cut(s) 193, 356
MspR9I CCNGG 1 cut(s) 356
MwoI GCNNNNNNNGC 3 cut(s) 74, 586, 787
NciI CCSGG 1 cut(s) 356
NdeI CATATG 3 cut(s) 178, 591, 784
NdeII GATC 1 cut(s) 282
NlaIII CATG 4 cut(s) 200, 320, 368, 676
NlaIV GGNNCC 3 cut(s) 159, 325, 425
NmuCI GTSAC 1 cut(s) 709
NsbI TGCGCA 1 cut(s) 789
NsiI ATGCAT 1 cut(s) 591
PagI TCATGA 1 cut(s) 364
PfeI GAWTC 8 cut(s) 182, 251, 337, 467, 688, 743, 846, 926
PkrI GCNGC 2 cut(s) 323, 760
PleI GAGTC 1 cut(s) 706
PpsI GAGTC 1 cut(s) 706
PshBI ATTAAT 1 cut(s) 101
PsiI TTATAA 1 cut(s) 908
PspN4I GGNNCC 3 cut(s) 159, 325, 425
PspPI GGNCC 4 cut(s) 268, 323, 358, 734
PstI CTGCAG 2 cut(s) 142, 963
PsuI RGATCY 1 cut(s) 282
RsaI GTAC 3 cut(s) 217, 490, 507
RsaNI GTAC 3 cut(s) 216, 489, 506
RseI CAYNNNNRTG 2 cut(s) 201, 594
SaqAI TTAA 4 cut(s) 101, 729, 753, 882
SatI GCNGC 2 cut(s) 322, 759
Sau3AI GATC 1 cut(s) 282
Sau96I GGNCC 4 cut(s) 268, 323, 358, 734
SchI GAGTC 1 cut(s) 706
ScrFI CCNGG 1 cut(s) 356
SduI GDGCHC 2 cut(s) 426, 778
SetI ASST 7 cut(s) 163, 191, 708, 752, 760, 891, 966
SfaNI GCATC 1 cut(s) 19
SfcI CTRYAG 2 cut(s) 138, 959
SinI GGWCC 2 cut(s) 268, 734
SmiMI CAYNNNNRTG 2 cut(s) 201, 594
SmlI CTYRAG 1 cut(s) 833
SmoI CTYRAG 1 cut(s) 833
Sse9I AATT 5 cut(s) 27, 89, 146, 346, 368
SsiI CCGC 2 cut(s) 321, 898
SspI AATATT 1 cut(s) 824
SspMI CTAG 3 cut(s) 74, 186, 747
StyD4I CCNGG 1 cut(s) 354
TaaI ACNGT 3 cut(s) 307, 493, 505
TaqI TCGA 2 cut(s) 849, 942
TasI AATT 5 cut(s) 27, 89, 146, 346, 368
TatI WGTACW 2 cut(s) 488, 505
TauI GCSGC 1 cut(s) 324
TfiI GAWTC 8 cut(s) 182, 251, 337, 467, 688, 743, 846, 926
Tru1I TTAA 4 cut(s) 101, 729, 753, 882
Tru9I TTAA 4 cut(s) 101, 729, 753, 882
TscAI CASTG 1 cut(s) 299
TseFI GTSAC 1 cut(s) 709
TseI GCWGC 1 cut(s) 758
Tsp45I GTSAC 1 cut(s) 709
TspDTI ATGAA 5 cut(s) 126, 195, 353, 381, 654
TspGWI ACGGA 1 cut(s) 655
TspRI CASTG 1 cut(s) 299
VpaK11BI GGWCC 2 cut(s) 268, 734
VspI ATTAAT 1 cut(s) 101
XapI RAATTY 3 cut(s) 89, 146, 368
XmiI GTMKAC 2 cut(s) 240, 456
XspI CTAG 3 cut(s) 74, 186, 747
Zsp2I ATGCAT 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.