Rmu_sc0008560.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008560.1
OG0000582
Physical Location & Seq
Forward (+)
21951 .. 25692
3742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008560.1_g000005.1.cds

Sequence Viewer

Length: 2694 bp
atgaacgcccctccgtttatctcctccggcggcccatggagtcagccactgccgccaccacttgccctaaaccccaatttctccctccaaaaccccctcaatctatacatgtacctttcaaacctcgcctccttcacaccccactactatccacctttccctcccaataatttcccaatacaaaaccctagcttcgaccccaagcacttctccaattcagcatttcatcctcaggctcaggcctcgtctcagaactcgaaagagctgctggagagaatcgaccgcgccgtggagaaggctcgctccgaccttattgccgccggggaaagcgtctcggcgtggaaggtctcgcagtctgcgattcggatactcgaggttgattgctggagctctctagggtttcaaatgcagcaggtgccgtctctgcaccgtctcatgctcactcaaggcaagatagatgcatttatccattgttttgttggggttcgaagaattgcttcattgtatgatctcgaagtagcaatctgcgagaatgagggcgttgaacggtttgaagagctgggattgggccctttgttgcgaaatcctcttgtcgtgcattatttctcagtgaagtgtgatgcaactgaagtgttaaggataacgagtgaggagataatatctttactttctgagttcatggatgcttgtaaacatacatatataagggttgaagaatttttagatttcattgtaaagaagtgcgcagttgcaagcaaggaagagcttggaatacgaattcacagcttggggatgcatatttcagccatccgggttgctagggatttagaatctgctgctctgaagaaatctggagagttaattattcaacaaccagattcaagatgtataaagcgaccaatgagaatgcagcaagatgaacatttcaccacctccatacgtaaacagttttgtggcaagcacattaggtttgattcagaggatgaatgtagtgatgacgaaaataatgaccatgtcagaaacaaccatgttaacttatcttcacaatctgctaaaagttctgacagagtggacagtgatgacggtttggttgtctctccatcacaatccaagggtccactcaaccaggttaacatatcatcacaatcagctgaaagttgtgacagactgaacactggtgatggtttggttgtctctccatcacaatcgaaaggtttcagtaccatttcttgtcgtgttgattcatttttctctgtacataagcagttttgtggcaagcacactaggtttgatttagaggatgaaggtagtgatgatgaaaataatgaccatgtcagaagcaaccatgttaacttatcttcacaatcttctaaaaattctgacagagtggactgtgatgatggtttggttgtctctccatcacaatctaagggtccgctcaaccaggttgacttatcatcccaatctgctgaaagttttgacagagtgaacactgatgatggtttggtggtctctccatcacaatccaaaggtccacttccctcattgaaaatgcagcaagacaaaggtttaagtaccatttcttgtgttgattcatttttctcagtaaataagcagttttgtggcaagcacattaggtttggttctgcagaaaactcggaggatgaatgtagtgatgatgatttacatgatgaagaagattataatcgtgaccaggtcacatgcagtgtggttaacttctcatcacaatctggtggaaggtctgaccgtgtgagcagctgtccttacccatctgcaatagaagagatacaacggcttgggttggaccaacttttcccaaatagtggcagccaaaagcataaagagactaatgactcggttaaaaagaaaagaaaatctgaaaatcttgcaagtgcagtctctatgccccccaaattgcgcaagacagcaaaggtagaacaagtcgcttggccaatagagaatggtaggcaagccaataatgatagaaatttggatggaaggaaagcggaaagctggccacctgttgattggagaactgcgccaaggtatgattatgcttgtgcaaatggctttaggacgcaggcaccaattttacagcctagaagtgacttacaaaagaagggggatgataatttggacacatttgttaagcagacgtataatatgattccagttacagatactcctcagtggggcacatctaactttggcaagagagatcgtcttagtacttgcacacctgatgcaatacaagcaaaggaaactgggagactaggtgagcttgctgcttttaaatactttattgagaaagctggcaagtcagctgtgaagtgggttaatgagcatagtgaaacaaggctaccgtatgatatagtggtaggggagaatgaagacagaaaagagttcattgaagttaaagcaaccagaaatccaaccaaagactggtttgaaatgtcagtgagacagttgcaatttgcagttgagcaaggtgaagctttcaatattgcgcatgtcattttatcagataataatgttgcgacagtgagagtatacaacaatctggagaaactattgatgaagcataacaaccaggagctacaggaccaggattgcaagctgaagttagttgtcttggtgcttgagccgcagaaggaatttaccattgtgtcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3883

Protein Analysis

897

Amino Acids

100.56

Weight (kDa)

5.64

Isoelectric Point (pI)

54.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08300 AT1G08300 AT1G08300 AT4G13750
fragaria_vesca FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_4g13620 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660
malus_domestica MD04G1012800.v1.1 MD04G1012900.v1.1 MD04G1013100.v1.1 MD04G1013300.v1.1
prunus_persica Prupe.1G159000_v2.0.a1 Prupe.1G159100_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G358100_v2.0.a1
pyrus_communis pycom04g01020 pycom04g01030
rosa_chinensis RchiOBHm_Chr4g0414341 RchiOBHm_Chr4g0414351 RchiOBHm_Chr6g0275261 RchiOBHm_Chr7g0213881 RchiOBHm_Chr7g0213891
rosa_laevigata RLG00000008153 RLG00000008155 RLG00000013477
rosa_multiflora Rmu_co8510163.1_g000001 Rmu_sc0004087.1_g000027 Rmu_sc0005196.1_g000014 Rmu_sc0005558.1_g000005 Rmu_sc0005558.1_g000006 Rmu_sc0008100.1_g000005 Rmu_sc0008560.1_g000005
rosa_roxburghii Rroxscaffold_5G00358210 Rroxscaffold_5G00358220 Rroxscaffold_7G00187920 Rroxscaffold_7G00187930 Rroxscaffold_7G00193450
rosa_rugosa Rorug04G0127100 Rorug04G0127200 Rorug04G0127300 Rorug04G0127400 Rorug06G0090600
rosa_samantha Rh4AG185200 Rh4AG185300 Rh4AG185500 Rh4BG184700 Rh4BG184800 Rh4CG198000 Rh4CG198100 Rh4DG182400 Rh4DG182600 Rh6AG204100 Rh6BG207000 Rh6CG209600 Rh6DG200000 Rh7AG277400 Rh7CG296400 Rh7CG296500
rosa_wichuraiana Rw4G015850 Rw4G015860 Rw6G017730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1704
AarI CACCTGC 1 cut(s) 403
Acc16I TGCGCA 3 cut(s) 745, 1940, 2529
Acc36I ACCTGC 1 cut(s) 403
AccB1I GGYRCC 2 cut(s) 415, 2104
AccB7I CCANNNNNTGG 2 cut(s) 1844, 2463
AccBSI CCGCTC 1 cut(s) 1438
AccI GTMKAC 1 cut(s) 2571
AccII CGCG 1 cut(s) 285
AciI CCGC 7 cut(s) 30, 53, 283, 318, 1436, 2027, 2666
AcoI YGGCCR 2 cut(s) 1970, 2036
AcsI RAATTY 5 cut(s) 716, 777, 1375, 2008, 2675
AcuI CTGAAG 3 cut(s) 648, 863, 2660
AfaI GTAC 5 cut(s) 113, 1222, 1257, 1576, 2251
AfiI CCNNNNNNNGG 4 cut(s) 289, 1844, 2213, 2463
AflIII ACRYGT 1 cut(s) 108
AjnI CCWGG 5 cut(s) 1125, 1443, 1713, 2610, 2625
Alw21I GWGCWC 1 cut(s) 392
AlwNI CAGNNNCTG 1 cut(s) 49
Ama87I CYCGRG 1 cut(s) 371
AoxI GGCC 5 cut(s) 31, 240, 568, 1970, 2036
ApaI GGGCCC 1 cut(s) 572
ApeKI GCWGC 8 cut(s) 265, 409, 836, 910, 1555, 1776, 1848, 2306
ApoI RAATTY 5 cut(s) 716, 777, 1375, 2008, 2675
Asp700I GAANNNNTTC 2 cut(s) 496, 1214
AspLEI GCGC 5 cut(s) 287, 746, 1941, 2062, 2530
AspS9I GGNCC 8 cut(s) 32, 568, 569, 1115, 1433, 1532, 1825, 2623
AsuC2I CCSGG 2 cut(s) 322, 812
AsuHPI GGTGA 4 cut(s) 919, 1190, 2309, 2522
AsuII TTCGAA 1 cut(s) 487
AvaI CYCGRG 1 cut(s) 371
AvaII GGWCC 5 cut(s) 1115, 1433, 1532, 1825, 2623
AxyI CCTNAGG 1 cut(s) 231
BaeGI GKGCMC 2 cut(s) 572, 2219
BalI TGGCCA 2 cut(s) 1972, 2038
BanI GGYRCC 2 cut(s) 415, 2104
BanII GRGCYC 2 cut(s) 392, 572
BbsI GAAGAC 1 cut(s) 2418
Bbv12I GWGCWC 1 cut(s) 392
BbvI GCAGC 8 cut(s) 252, 421, 823, 922, 1567, 1788, 1860, 2293
BceAI ACGGC 3 cut(s) 272, 403, 1829
BcgI CGANNNNNNTGC 6 cut(s) 247, 281, 296, 330, 1638, 1672
BciT130I CCWGG 5 cut(s) 1127, 1445, 1715, 2612, 2627
BciVI GTATCC 1 cut(s) 360
BcnI CCSGG 2 cut(s) 322, 812
BfaI CTAG 6 cut(s) 189, 395, 819, 1284, 2121, 2294
BfmI CTRYAG 2 cut(s) 1647, 2618
BfuAI ACCTGC 1 cut(s) 403
BfuI GTATCC 1 cut(s) 360
BmcAI AGTACT 1 cut(s) 2251
Bme1390I CCNGG 7 cut(s) 322, 812, 1127, 1445, 1715, 2612, 2627
Bme18I GGWCC 5 cut(s) 1115, 1433, 1532, 1825, 2623
BmeT110I CYCGRG 1 cut(s) 371
BmgT120I GGNCC 8 cut(s) 32, 568, 569, 1115, 1433, 1532, 1825, 2623
BmiI GGNNCC 5 cut(s) 417, 570, 1116, 1434, 2106
BmrFI CCNGG 7 cut(s) 322, 812, 1127, 1445, 1715, 2612, 2627
BmrI ACTGGG 1 cut(s) 2295
BmsI GCATC 5 cut(s) 448, 610, 673, 783, 2254
BmuI ACTGGG 1 cut(s) 2295
BpiI GAAGAC 1 cut(s) 2418
BpmI CTGGAG 4 cut(s) 290, 406, 873, 2603
Bpu10I CCTNAGC 1 cut(s) 237
Bpu14I TTCGAA 1 cut(s) 487
BpuEI CTTGAG 2 cut(s) 429, 2681
BpuMI CCSGG 2 cut(s) 322, 812
BsaAI YACGTR 1 cut(s) 941
BsaBI GATNNNNATC 1 cut(s) 1704
BsaI GGTCTC 2 cut(s) 352, 1516
BsaJI CCNNGG 5 cut(s) 35, 288, 321, 1110, 2063
BsaXI ACNNNNNCTCC 6 cut(s) 113, 143, 2188, 2218, 2281, 2311
Bsc4I CCNNNNNNNGG 4 cut(s) 289, 1844, 2213, 2463
Bse1I ACTGG 4 cut(s) 1180, 2192, 2290, 2468
Bse21I CCTNAGG 1 cut(s) 231
Bse8I GATNNNNATC 1 cut(s) 1704
BseBI CCWGG 5 cut(s) 1127, 1445, 1715, 2612, 2627
BseDI CCNNGG 5 cut(s) 35, 288, 321, 1110, 2063
BseJI GATNNNNATC 1 cut(s) 1704
BseLI CCNNNNNNNGG 4 cut(s) 289, 1844, 2213, 2463
BseMII CTCAG 7 cut(s) 245, 251, 263, 621, 663, 1617, 2222
BseNI ACTGG 4 cut(s) 1180, 2192, 2290, 2468
BseRI GAGGAG 3 cut(s) 13, 665, 2196
BseSI GKGCMC 2 cut(s) 572, 2219
BseXI GCAGC 8 cut(s) 252, 421, 823, 922, 1567, 1788, 1860, 2293
BseYI CCCAGC 1 cut(s) 559
BsgI GTGCAG 2 cut(s) 410, 1935
Bsh1236I CGCG 1 cut(s) 285
Bsh1285I CGRYCG 1 cut(s) 283
BshFI GGCC 5 cut(s) 33, 242, 570, 1972, 2038
BshNI GGYRCC 2 cut(s) 415, 2104
BsiEI CGRYCG 1 cut(s) 283
BsiHKAI GWGCWC 1 cut(s) 392
BsiHKCI CYCGRG 1 cut(s) 371
BsiSI CCGG 3 cut(s) 27, 321, 811
BslI CCNNNNNNNGG 4 cut(s) 289, 1844, 2213, 2463
BsmBI CGTCTC 4 cut(s) 252, 337, 426, 437
BsmI GAATGC 1 cut(s) 912
BsnI GGCC 5 cut(s) 33, 242, 570, 1972, 2038
Bso31I GGTCTC 2 cut(s) 352, 1516
BsoBI CYCGRG 1 cut(s) 371
Bsp119I TTCGAA 1 cut(s) 487
Bsp120I GGGCCC 1 cut(s) 568
Bsp1286I GDGCHC 3 cut(s) 392, 572, 2219
Bsp1407I TGTACA 1 cut(s) 1255
Bsp143I GATC 2 cut(s) 508, 2239
Bsp19I CCATGG 1 cut(s) 35
BspACI CCGC 7 cut(s) 30, 53, 283, 318, 1436, 2027, 2666
BspANI GGCC 5 cut(s) 33, 242, 570, 1972, 2038
BspCNI CTCAG 7 cut(s) 244, 250, 262, 620, 664, 1616, 2221
BspFNI CGCG 1 cut(s) 285
BspLI GGNNCC 5 cut(s) 417, 570, 1116, 1434, 2106
BspMAI CTGCAG 1 cut(s) 1651
BspMI ACCTGC 1 cut(s) 403
BspQI GCTCTTC 2 cut(s) 549, 756
BspT104I TTCGAA 1 cut(s) 487
BspT107I GGYRCC 2 cut(s) 415, 2104
BspTNI GGTCTC 2 cut(s) 352, 1516
BsrBI CCGCTC 1 cut(s) 1438
BsrGI TGTACA 1 cut(s) 1255
BsrI ACTGG 4 cut(s) 1180, 2192, 2290, 2468
BssECI CCNNGG 5 cut(s) 35, 288, 321, 1110, 2063
BssMI GATC 2 cut(s) 508, 2239
BssNAI GTATAC 1 cut(s) 2572
BssT1I CCWWGG 3 cut(s) 35, 1110, 2063
Bst1107I GTATAC 1 cut(s) 2572
Bst2UI CCWGG 5 cut(s) 1127, 1445, 1715, 2612, 2627
Bst6I CTCTTC 3 cut(s) 549, 756, 1797
BstAPI GCANNNNNTGC 1 cut(s) 415
BstAUI TGTACA 1 cut(s) 1255
BstBAI YACGTR 1 cut(s) 941
BstBI TTCGAA 1 cut(s) 487
BstDEI CTNAG 9 cut(s) 231, 237, 249, 607, 672, 1428, 1603, 2208, 2246
BstDSI CCRYGG 2 cut(s) 35, 288
BstFNI CGCG 1 cut(s) 285
BstHHI GCGC 5 cut(s) 287, 746, 1941, 2062, 2530
BstKTI GATC 2 cut(s) 511, 2242
BstMBI GATC 2 cut(s) 508, 2239
BstMCI CGRYCG 1 cut(s) 283
BstMWI GCNNNNNNNGC 5 cut(s) 52, 415, 424, 2273, 2665
BstNI CCWGG 5 cut(s) 1127, 1445, 1715, 2612, 2627
BstNSI RCATGY 3 cut(s) 112, 1725, 2534
BstSCI CCNGG 7 cut(s) 320, 810, 1125, 1443, 1713, 2610, 2625
BstSFI CTRYAG 2 cut(s) 1647, 2618
BstSLI GKGCMC 2 cut(s) 572, 2219
BstSNI TACGTA 1 cut(s) 941
BstUI CGCG 1 cut(s) 285
BstV1I GCAGC 8 cut(s) 252, 421, 823, 922, 1567, 1788, 1860, 2293
BstV2I GAAGAC 1 cut(s) 2418
BstZ17I GTATAC 1 cut(s) 2572
Bsu36I CCTNAGG 1 cut(s) 231
BsuI GTATCC 1 cut(s) 360
BsuRI GGCC 5 cut(s) 33, 242, 570, 1972, 2038
BtgI CCRYGG 2 cut(s) 35, 288
BtsI GCAGTG 2 cut(s) 47, 1732
BtsIMutI CAGTG 9 cut(s) 47, 615, 1081, 1173, 1491, 1732, 2216, 2484, 2568
BveI ACCTGC 1 cut(s) 403
CaiI CAGNNNCTG 1 cut(s) 49
CfoI GCGC 5 cut(s) 287, 746, 1941, 2062, 2530
Cfr13I GGNCC 8 cut(s) 32, 568, 569, 1115, 1433, 1532, 1825, 2623
CseI GACGC 2 cut(s) 319, 2107
CsiI ACCWGGT 3 cut(s) 1125, 1443, 1713
Csp6I GTAC 5 cut(s) 112, 1221, 1256, 1575, 2250
CviQI GTAC 5 cut(s) 112, 1221, 1256, 1575, 2250
DdeI CTNAG 9 cut(s) 231, 237, 249, 607, 672, 1428, 1603, 2208, 2246
DpnI GATC 2 cut(s) 510, 2241
DpnII GATC 2 cut(s) 508, 2239
DraI TTTAAA 1 cut(s) 2314
EaeI YGGCCR 2 cut(s) 1970, 2036
Eam1104I CTCTTC 3 cut(s) 549, 756, 1797
EarI CTCTTC 3 cut(s) 549, 756, 1797
Ecl136II GAGCTC 1 cut(s) 390
Eco105I TACGTA 1 cut(s) 941
Eco130I CCWWGG 3 cut(s) 35, 1110, 2063
Eco147I AGGCCT 1 cut(s) 242
Eco24I GRGCYC 2 cut(s) 392, 572
Eco31I GGTCTC 2 cut(s) 352, 1516
Eco47I GGWCC 5 cut(s) 1115, 1433, 1532, 1825, 2623
Eco53kI GAGCTC 1 cut(s) 390
Eco57I CTGAAG 3 cut(s) 648, 863, 2660
Eco81I CCTNAGG 1 cut(s) 231
Eco88I CYCGRG 1 cut(s) 371
EcoICRI GAGCTC 1 cut(s) 390
EcoO109I RGGNCCY 1 cut(s) 569
EcoRI GAATTC 1 cut(s) 777
EcoRII CCWGG 5 cut(s) 1125, 1443, 1713, 2610, 2625
EcoT14I CCWWGG 3 cut(s) 35, 1110, 2063
EcoT22I ATGCAT 2 cut(s) 463, 798
EcoT38I GRGCYC 2 cut(s) 392, 572
ErhI CCWWGG 3 cut(s) 35, 1110, 2063
Esp3I CGTCTC 4 cut(s) 252, 337, 426, 437
FalI AAGNNNNNCTT 4 cut(s) 481, 513, 1521, 1553
FblI GTMKAC 1 cut(s) 2571
FriOI GRGCYC 2 cut(s) 392, 572
FspBI CTAG 6 cut(s) 189, 395, 819, 1284, 2121, 2294
FspI TGCGCA 3 cut(s) 745, 1940, 2529
GlaI GCGC 5 cut(s) 286, 745, 1940, 2061, 2529
GsaI CCCAGC 1 cut(s) 563
GsuI CTGGAG 4 cut(s) 290, 406, 873, 2603
HaeIII GGCC 5 cut(s) 33, 242, 570, 1972, 2038
HapII CCGG 3 cut(s) 27, 321, 811
HgaI GACGC 2 cut(s) 319, 2107
HhaI GCGC 5 cut(s) 287, 746, 1941, 2062, 2530
Hin6I GCGC 5 cut(s) 285, 744, 1939, 2060, 2528
HinP1I GCGC 5 cut(s) 285, 744, 1939, 2060, 2528
HincII GTYRAC 5 cut(s) 1033, 1132, 1351, 1450, 1735
HindII GTYRAC 5 cut(s) 1033, 1132, 1351, 1450, 1735
HindIII AAGCTT 1 cut(s) 2514
HpaI GTTAAC 4 cut(s) 1033, 1132, 1351, 1735
HpaII CCGG 3 cut(s) 27, 321, 811
HphI GGTGA 4 cut(s) 919, 1190, 2309, 2522
Hpy188III TCNNGA 6 cut(s) 512, 852, 882, 1709, 2582, 2691
HpyAV CCTTC 8 cut(s) 142, 289, 337, 1298, 1752, 2013, 2134, 2665
HpyCH4IV ACGT 2 cut(s) 940, 2177
HpyF10VI GCNNNNNNNGC 5 cut(s) 52, 415, 424, 2273, 2665
HpyF3I CTNAG 9 cut(s) 231, 237, 249, 607, 672, 1428, 1603, 2208, 2246
HpySE526I ACGT 2 cut(s) 940, 2177
HspAI GCGC 5 cut(s) 285, 744, 1939, 2060, 2528
KspAI GTTAAC 4 cut(s) 1033, 1132, 1351, 1735
Kzo9I GATC 2 cut(s) 508, 2239
LguI GCTCTTC 2 cut(s) 549, 756
LmnI GCTCC 3 cut(s) 308, 387, 2614
Lsp1109I GCAGC 8 cut(s) 252, 421, 823, 922, 1567, 1788, 1860, 2293
LweI GCATC 5 cut(s) 448, 610, 673, 783, 2254
MabI ACCWGGT 3 cut(s) 1125, 1443, 1713
MaeI CTAG 6 cut(s) 189, 395, 819, 1284, 2121, 2294
MaeII ACGT 2 cut(s) 940, 2177
MaeIII GTNAC 5 cut(s) 1160, 1709, 1717, 2126, 2194
MalI GATC 2 cut(s) 510, 2241
MbiI CCGCTC 1 cut(s) 1438
MboI GATC 2 cut(s) 508, 2239
MhlI GDGCHC 3 cut(s) 392, 572, 2219
MlsI TGGCCA 2 cut(s) 1972, 2038
MluNI TGGCCA 2 cut(s) 1972, 2038
MlyI GAGTC 2 cut(s) 49, 1868
MmeI TCCRAC 3 cut(s) 330, 1803, 2477
Mox20I TGGCCA 2 cut(s) 1972, 2038
Mph1103I ATGCAT 2 cut(s) 463, 798
MroXI GAANNNNTTC 2 cut(s) 496, 1214
MscI TGGCCA 2 cut(s) 1972, 2038
Msp20I TGGCCA 2 cut(s) 1972, 2038
MspA1I CMGCKG 3 cut(s) 1151, 1779, 2345
MspI CCGG 3 cut(s) 27, 321, 811
MspR9I CCNGG 7 cut(s) 322, 812, 1127, 1445, 1715, 2612, 2627
Mva1269I GAATGC 1 cut(s) 912
MvaI CCWGG 5 cut(s) 1127, 1445, 1715, 2612, 2627
MvnI CGCG 1 cut(s) 285
MwoI GCNNNNNNNGC 5 cut(s) 52, 415, 424, 2273, 2665
NciI CCSGG 2 cut(s) 322, 812
NcoI CCATGG 1 cut(s) 35
NdeII GATC 2 cut(s) 508, 2239
NlaIV GGNNCC 5 cut(s) 417, 570, 1116, 1434, 2106
NmeAIII GCCGAG 1 cut(s) 314
NmuCI GTSAC 4 cut(s) 1160, 1709, 1717, 2126
NsbI TGCGCA 3 cut(s) 745, 1940, 2529
NsiI ATGCAT 2 cut(s) 463, 798
NspI RCATGY 3 cut(s) 112, 1725, 2534
NspV TTCGAA 1 cut(s) 487
PaeR7I CTCGAG 1 cut(s) 371
PaqCI CACCTGC 1 cut(s) 403
PceI AGGCCT 1 cut(s) 242
PciI ACATGT 1 cut(s) 108
PciSI GCTCTTC 2 cut(s) 549, 756
PcsI WCGNNNNNNNCGW 2 cut(s) 285, 356
PctI GAATGC 1 cut(s) 912
PdmI GAANNNNTTC 2 cut(s) 496, 1214
PfeI GAWTC 8 cut(s) 276, 361, 830, 878, 974, 1241, 1592, 2188
PflFI GACNNNGTC 3 cut(s) 1013, 1331, 1715
PflMI CCANNNNNTGG 2 cut(s) 1844, 2463
PleI GAGTC 2 cut(s) 48, 1868
PpsI GAGTC 2 cut(s) 48, 1868
Ppu21I YACGTR 1 cut(s) 941
PscI ACATGT 1 cut(s) 108
PsiI TTATAA 1 cut(s) 1704
Psp124BI GAGCTC 1 cut(s) 392
Psp6I CCWGG 5 cut(s) 1125, 1443, 1713, 2610, 2625
PspFI CCCAGC 1 cut(s) 559
PspGI CCWGG 5 cut(s) 1125, 1443, 1713, 2610, 2625
PspN4I GGNNCC 5 cut(s) 417, 570, 1116, 1434, 2106
PspOMI GGGCCC 1 cut(s) 568
PspPI GGNCC 8 cut(s) 32, 568, 569, 1115, 1433, 1532, 1825, 2623
PspXI VCTCGAGB 1 cut(s) 371
PstI CTGCAG 1 cut(s) 1651
PstNI CAGNNNCTG 1 cut(s) 49
PsyI GACNNNGTC 3 cut(s) 1013, 1331, 1715
PvuII CAGCTG 3 cut(s) 1151, 1779, 2345
RsaI GTAC 5 cut(s) 113, 1222, 1257, 1576, 2251
RsaNI GTAC 5 cut(s) 112, 1221, 1256, 1575, 2250
SacI GAGCTC 1 cut(s) 392
SapI GCTCTTC 2 cut(s) 549, 756
Sau3AI GATC 2 cut(s) 508, 2239
Sau96I GGNCC 8 cut(s) 32, 568, 569, 1115, 1433, 1532, 1825, 2623
ScaI AGTACT 1 cut(s) 2251
SchI GAGTC 2 cut(s) 49, 1868
ScrFI CCNGG 7 cut(s) 322, 812, 1127, 1445, 1715, 2612, 2627
SduI GDGCHC 3 cut(s) 392, 572, 2219
SexAI ACCWGGT 3 cut(s) 1125, 1443, 1713
SfaNI GCATC 5 cut(s) 448, 610, 673, 783, 2254
SfcI CTRYAG 2 cut(s) 1647, 2618
Sfr274I CTCGAG 1 cut(s) 371
SfuI TTCGAA 1 cut(s) 487
SinI GGWCC 5 cut(s) 1115, 1433, 1532, 1825, 2623
SlaI CTCGAG 1 cut(s) 371
SmlI CTYRAG 3 cut(s) 371, 444, 2660
SmoI CTYRAG 3 cut(s) 371, 444, 2660
SnaBI TACGTA 1 cut(s) 941
SseBI AGGCCT 1 cut(s) 242
SsiI CCGC 7 cut(s) 30, 53, 283, 318, 1436, 2027, 2666
SspI AATATT 1 cut(s) 2524
SspMI CTAG 6 cut(s) 189, 395, 819, 1284, 2121, 2294
SstI GAGCTC 1 cut(s) 392
StuI AGGCCT 1 cut(s) 242
StyD4I CCNGG 7 cut(s) 320, 810, 1125, 1443, 1713, 2610, 2625
StyI CCWWGG 3 cut(s) 35, 1110, 2063
TaiI ACGT 2 cut(s) 943, 2180
TaqI TCGA 7 cut(s) 195, 257, 279, 372, 487, 513, 1208
TatI WGTACW 2 cut(s) 1255, 2249
TauI GCSGC 4 cut(s) 33, 55, 320, 2668
TfiI GAWTC 8 cut(s) 276, 361, 830, 878, 974, 1241, 1592, 2188
TscAI CASTG 9 cut(s) 54, 615, 1081, 1180, 1498, 1732, 2216, 2484, 2568
TseFI GTSAC 4 cut(s) 1160, 1709, 1717, 2126
TseI GCWGC 8 cut(s) 265, 409, 836, 910, 1555, 1776, 1848, 2306
Tsp45I GTSAC 4 cut(s) 1160, 1709, 1717, 2126
TspRI CASTG 9 cut(s) 54, 615, 1081, 1180, 1498, 1732, 2216, 2484, 2568
Tth111I GACNNNGTC 3 cut(s) 1013, 1331, 1715
Van91I CCANNNNNTGG 2 cut(s) 1844, 2463
VpaK11BI GGWCC 5 cut(s) 1115, 1433, 1532, 1825, 2623
XapI RAATTY 5 cut(s) 716, 777, 1375, 2008, 2675
XceI RCATGY 3 cut(s) 112, 1725, 2534
XcmI CCANNNNNNNNNTGG 3 cut(s) 476, 2046, 2460
XhoI CTCGAG 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 2571
XmnI GAANNNNTTC 2 cut(s) 496, 1214
XspI CTAG 6 cut(s) 189, 395, 819, 1284, 2121, 2294
ZrmI AGTACT 1 cut(s) 2251
Zsp2I ATGCAT 2 cut(s) 463, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.