Rorug04G0127300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000582
Physical Location & Seq
Reverse (-)
20212715 .. 20215585
2871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0127300.1

Sequence Viewer

Length: 828 bp
ATGGACAATGTTAACCTTTTGACAAGTACAGATGCAGATGGTGGACTGCTGGCTTCTCCTCCTATTAGATTTAACAAAGAAGAAATACTGTTAGCTGTCTCAACAAATGACAATGGTATTAAACTTCTAGCAAATTCAGATGGAATTAGGTTACTGAGAACAGTGGATGCTTCCAGAGCTGCTTCTGTGGCTGTTGTGAAGGTCTCAGCAGTAGGAACATTTGGATTGTCTAACATTACTGTTGGAACAGGCATTGGAGATCGAGCAGCTCCAATGCCAGGCATGGTTGGACTGTCTAAACTCTGCATGCGGTCCCAGCGCTGCCTCACCTTCCCTGTCATAGTGTCATATTCCAACGAGCCATTAAAAAAACCAGTATTTGCAGGAAATATAAGGAAAAAGAGCAACGACAGCAGCAGTAACACATGCATTATGGAAAAGGAAACCACTATATTGAAGGCTGAAGAGCTCAATAAGAAGCATCAACAAATCCCTGGCAGCAGACAAGTTCTAGAACTTTTGAAAGCTACTTCAGACCCATCTGCCAATGTTCTCGACATCGTGCTTTACTTTTCAAGGCGTAACGGAGAGATTAGGTGTATTTCAGCAGAGATAAAATTGCACCACCAGCGGCAAGAGGAGGACAAAGTACTAGATGAAGAAATTGAAGAGGATGAGATGTTCTGGAATCAAGAAGCTCTTAAAGAGGAGGAAGAAGATGATAACTATGAAGTGGAGCTGAAGTTGCTGATGTGTTCTCAAATTGTTTACTTTAATTTCAAGTTTTCTAGCATTTTAGAGGAAATGTATGCTGATGAAAAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3883

Protein Analysis

275

Amino Acids

30.62

Weight (kDa)

4.95

Isoelectric Point (pI)

47.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08300 AT1G08300 AT1G08300 AT4G13750
fragaria_vesca FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_4g13620 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660
malus_domestica MD04G1012800.v1.1 MD04G1012900.v1.1 MD04G1013100.v1.1 MD04G1013300.v1.1
prunus_persica Prupe.1G159000_v2.0.a1 Prupe.1G159100_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G358100_v2.0.a1
pyrus_communis pycom04g01020 pycom04g01030
rosa_chinensis RchiOBHm_Chr4g0414341 RchiOBHm_Chr4g0414351 RchiOBHm_Chr6g0275261 RchiOBHm_Chr7g0213881 RchiOBHm_Chr7g0213891
rosa_laevigata RLG00000008153 RLG00000008155 RLG00000013477
rosa_multiflora Rmu_co8510163.1_g000001 Rmu_sc0004087.1_g000027 Rmu_sc0005196.1_g000014 Rmu_sc0005558.1_g000005 Rmu_sc0005558.1_g000006 Rmu_sc0008100.1_g000005 Rmu_sc0008560.1_g000005
rosa_roxburghii Rroxscaffold_5G00358210 Rroxscaffold_5G00358220 Rroxscaffold_7G00187920 Rroxscaffold_7G00187930 Rroxscaffold_7G00193450
rosa_rugosa Rorug04G0127100 Rorug04G0127200 Rorug04G0127300 Rorug04G0127400 Rorug06G0090600
rosa_samantha Rh4AG185200 Rh4AG185300 Rh4AG185500 Rh4BG184700 Rh4BG184800 Rh4CG198000 Rh4CG198100 Rh4DG182400 Rh4DG182600 Rh6AG204100 Rh6BG207000 Rh6CG209600 Rh6DG200000 Rh7AG277400 Rh7CG296400 Rh7CG296500
rosa_wichuraiana Rw4G015850 Rw4G015860 Rw6G017730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 310, 631
AcsI RAATTY 1 cut(s) 133
AcuI CTGAAG 3 cut(s) 483, 516, 761
AfaI GTAC 2 cut(s) 28, 651
AfeI AGCGCT 1 cut(s) 320
AfiI CCNNNNNNNGG 1 cut(s) 278
AgsI TTSAA 5 cut(s) 457, 523, 576, 668, 781
AjnI CCWGG 2 cut(s) 277, 493
AloI GAACNNNNNNTCC 2 cut(s) 665, 697
AluBI AGCT 7 cut(s) 95, 179, 269, 469, 527, 698, 739
AluI AGCT 7 cut(s) 95, 179, 269, 469, 527, 698, 739
Alw21I GWGCWC 1 cut(s) 471
Alw26I GTCTC 2 cut(s) 103, 208
Aor51HI AGCGCT 1 cut(s) 320
ApeKI GCWGC 5 cut(s) 179, 266, 321, 414, 498
ApoI RAATTY 1 cut(s) 133
AspLEI GCGC 1 cut(s) 321
AspS9I GGNCC 1 cut(s) 312
AsuHPI GGTGA 1 cut(s) 319
AvaII GGWCC 1 cut(s) 312
BanII GRGCYC 1 cut(s) 471
Bbv12I GWGCWC 1 cut(s) 471
BbvI GCAGC 5 cut(s) 166, 278, 308, 426, 510
BccI CCATC 3 cut(s) 32, 134, 547
BciT130I CCWGG 2 cut(s) 279, 495
BcoDI GTCTC 2 cut(s) 103, 208
BfaI CTAG 4 cut(s) 128, 512, 653, 789
BfoI RGCGCY 1 cut(s) 322
BisI GCNGC 6 cut(s) 180, 267, 322, 415, 499, 632
BlsI GCNGC 6 cut(s) 181, 268, 323, 416, 500, 633
BmcAI AGTACT 1 cut(s) 651
Bme1390I CCNGG 2 cut(s) 279, 495
Bme18I GGWCC 1 cut(s) 312
BmgT120I GGNCC 1 cut(s) 312
BmiI GGNNCC 1 cut(s) 314
BmrFI CCNGG 2 cut(s) 279, 495
BmsI GCATC 3 cut(s) 22, 157, 490
BsaI GGTCTC 1 cut(s) 208
BsaJI CCNNGG 1 cut(s) 493
BsaXI ACNNNNNCTCC 2 cut(s) 728, 758
Bsc4I CCNNNNNNNGG 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 374
BseBI CCWGG 2 cut(s) 279, 495
BseDI CCNNGG 1 cut(s) 493
BseGI GGATG 2 cut(s) 172, 679
BseLI CCNNNNNNNGG 1 cut(s) 278
BseMII CTCAG 2 cut(s) 146, 219
BseNI ACTGG 1 cut(s) 374
BseRI GAGGAG 3 cut(s) 48, 653, 722
BseXI GCAGC 5 cut(s) 166, 278, 308, 426, 510
BseYI CCCAGC 1 cut(s) 315
BsiHKAI GWGCWC 1 cut(s) 471
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 1 cut(s) 278
BsmAI GTCTC 2 cut(s) 103, 208
BsmFI GGGAC 1 cut(s) 298
Bso31I GGTCTC 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 471
Bsp143I GATC 1 cut(s) 259
BspACI CCGC 2 cut(s) 310, 631
BspCNI CTCAG 2 cut(s) 147, 218
BspLI GGNNCC 1 cut(s) 314
BspQI GCTCTTC 1 cut(s) 459
BspTNI GGTCTC 1 cut(s) 208
BsrI ACTGG 1 cut(s) 374
BssECI CCNNGG 1 cut(s) 493
BssMI GATC 1 cut(s) 259
Bst2UI CCWGG 2 cut(s) 279, 495
Bst4CI ACNGT 4 cut(s) 90, 163, 241, 294
Bst6I CTCTTC 2 cut(s) 459, 663
BstC8I GCNNGC 2 cut(s) 51, 308
BstDEI CTNAG 2 cut(s) 155, 205
BstF5I GGATG 2 cut(s) 172, 679
BstH2I RGCGCY 1 cut(s) 322
BstHHI GCGC 1 cut(s) 321
BstKTI GATC 1 cut(s) 262
BstMAI GTCTC 2 cut(s) 103, 208
BstMBI GATC 1 cut(s) 259
BstMWI GCNNNNNNNGC 6 cut(s) 176, 188, 316, 411, 628, 745
BstNI CCWGG 2 cut(s) 279, 495
BstNSI RCATGY 2 cut(s) 310, 429
BstSCI CCNGG 2 cut(s) 277, 493
BstV1I GCAGC 5 cut(s) 166, 278, 308, 426, 510
BtsCI GGATG 2 cut(s) 172, 679
BtsIMutI CAGTG 1 cut(s) 168
Cac8I GCNNGC 2 cut(s) 51, 308
CfoI GCGC 1 cut(s) 321
Cfr13I GGNCC 1 cut(s) 312
Csp6I GTAC 2 cut(s) 27, 650
CviAII CATG 3 cut(s) 283, 307, 426
CviQI GTAC 2 cut(s) 27, 650
DdeI CTNAG 2 cut(s) 155, 205
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
Eam1104I CTCTTC 2 cut(s) 459, 663
EarI CTCTTC 2 cut(s) 459, 663
Ecl136II GAGCTC 1 cut(s) 469
Eco24I GRGCYC 1 cut(s) 471
Eco31I GGTCTC 1 cut(s) 208
Eco47I GGWCC 1 cut(s) 312
Eco47III AGCGCT 1 cut(s) 320
Eco53kI GAGCTC 1 cut(s) 469
Eco57I CTGAAG 3 cut(s) 483, 516, 761
EcoICRI GAGCTC 1 cut(s) 469
EcoRII CCWGG 2 cut(s) 277, 493
EcoT22I ATGCAT 1 cut(s) 431
EcoT38I GRGCYC 1 cut(s) 471
FaeI CATG 3 cut(s) 286, 310, 429
FalI AAGNNNNNCTT 2 cut(s) 684, 716
FaqI GGGAC 1 cut(s) 298
FatI CATG 3 cut(s) 282, 306, 425
Fnu4HI GCNGC 6 cut(s) 180, 267, 322, 415, 499, 632
FokI GGATG 2 cut(s) 179, 686
FriOI GRGCYC 1 cut(s) 471
Fsp4HI GCNGC 6 cut(s) 180, 267, 322, 415, 499, 632
FspBI CTAG 4 cut(s) 128, 512, 653, 789
GlaI GCGC 1 cut(s) 320
GluI GCNGC 6 cut(s) 180, 267, 322, 415, 499, 632
GsaI CCCAGC 1 cut(s) 319
HaeII RGCGCY 1 cut(s) 322
HhaI GCGC 1 cut(s) 321
Hin1II CATG 3 cut(s) 286, 310, 429
Hin6I GCGC 1 cut(s) 319
HinP1I GCGC 1 cut(s) 319
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HinfI GANTC 1 cut(s) 688
HpaI GTTAAC 1 cut(s) 13
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 3 cut(s) 13, 44, 769
Hpy188I TCNGA 2 cut(s) 139, 535
Hpy188III TCNNGA 5 cut(s) 174, 512, 554, 685, 692
Hpy8I GTNNAC 3 cut(s) 13, 44, 769
HpyAV CCTTC 3 cut(s) 193, 340, 451
HpyCH4III ACNGT 4 cut(s) 90, 163, 241, 294
HpyCH4V TGCA 5 cut(s) 35, 306, 383, 429, 622
HpyF10VI GCNNNNNNNGC 6 cut(s) 176, 188, 316, 411, 628, 745
HpyF3I CTNAG 2 cut(s) 155, 205
Hsp92II CATG 3 cut(s) 286, 310, 429
HspAI GCGC 1 cut(s) 319
KspAI GTTAAC 1 cut(s) 13
Kzo9I GATC 1 cut(s) 259
LguI GCTCTTC 1 cut(s) 459
LmnI GCTCC 2 cut(s) 274, 736
Lsp1109I GCAGC 5 cut(s) 166, 278, 308, 426, 510
LweI GCATC 3 cut(s) 22, 157, 490
MaeI CTAG 4 cut(s) 128, 512, 653, 789
MaeIII GTNAC 3 cut(s) 150, 419, 581
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MboII GAAGA 6 cut(s) 92, 476, 671, 680, 725, 728
MhlI GDGCHC 1 cut(s) 471
MluCI AATT 6 cut(s) 133, 144, 617, 663, 762, 775
MmeI TCCRAC 3 cut(s) 223, 268, 378
MnlI CCTC 8 cut(s) 69, 335, 631, 634, 664, 700, 703, 793
Mph1103I ATGCAT 1 cut(s) 431
MseI TTAA 6 cut(s) 12, 72, 120, 365, 702, 774
MspA1I CMGCKG 1 cut(s) 631
MspR9I CCNGG 2 cut(s) 279, 495
MvaI CCWGG 2 cut(s) 279, 495
MwoI GCNNNNNNNGC 6 cut(s) 176, 188, 316, 411, 628, 745
NdeII GATC 1 cut(s) 259
NlaIII CATG 3 cut(s) 286, 310, 429
NlaIV GGNNCC 1 cut(s) 314
NsiI ATGCAT 1 cut(s) 431
NspI RCATGY 2 cut(s) 310, 429
PaeI GCATGC 1 cut(s) 310
PciSI GCTCTTC 1 cut(s) 459
PfeI GAWTC 1 cut(s) 688
PkrI GCNGC 6 cut(s) 181, 268, 323, 416, 500, 633
Psp124BI GAGCTC 1 cut(s) 471
Psp6I CCWGG 2 cut(s) 277, 493
PspFI CCCAGC 1 cut(s) 315
PspGI CCWGG 2 cut(s) 277, 493
PspN4I GGNNCC 1 cut(s) 314
PspPI GGNCC 1 cut(s) 312
RsaI GTAC 2 cut(s) 28, 651
RsaNI GTAC 2 cut(s) 27, 650
SacI GAGCTC 1 cut(s) 471
SapI GCTCTTC 1 cut(s) 459
SaqAI TTAA 6 cut(s) 12, 72, 120, 365, 702, 774
SatI GCNGC 6 cut(s) 180, 267, 322, 415, 499, 632
Sau3AI GATC 1 cut(s) 259
Sau96I GGNCC 1 cut(s) 312
ScaI AGTACT 1 cut(s) 651
ScrFI CCNGG 2 cut(s) 279, 495
SduI GDGCHC 1 cut(s) 471
SfaNI GCATC 3 cut(s) 22, 157, 490
SinI GGWCC 1 cut(s) 312
SphI GCATGC 1 cut(s) 310
Sse9I AATT 6 cut(s) 133, 144, 617, 663, 762, 775
SsiI CCGC 2 cut(s) 310, 631
SspMI CTAG 4 cut(s) 128, 512, 653, 789
SstI GAGCTC 1 cut(s) 471
StyD4I CCNGG 2 cut(s) 277, 493
TaaI ACNGT 4 cut(s) 90, 163, 241, 294
TaqI TCGA 2 cut(s) 262, 555
TasI AATT 6 cut(s) 133, 144, 617, 663, 762, 775
TatI WGTACW 2 cut(s) 26, 649
TauI GCSGC 1 cut(s) 634
TfiI GAWTC 1 cut(s) 688
Tru1I TTAA 6 cut(s) 12, 72, 120, 365, 702, 774
Tru9I TTAA 6 cut(s) 12, 72, 120, 365, 702, 774
TscAI CASTG 1 cut(s) 168
TseI GCWGC 5 cut(s) 179, 266, 321, 414, 498
TspDTI ATGAA 2 cut(s) 672, 744
TspGWI ACGGA 1 cut(s) 600
TspRI CASTG 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 312
XapI RAATTY 1 cut(s) 133
XbaI TCTAGA 1 cut(s) 511
XceI RCATGY 2 cut(s) 310, 429
XspI CTAG 4 cut(s) 128, 512, 653, 789
ZrmI AGTACT 1 cut(s) 651
Zsp2I ATGCAT 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.