RchiOBHm_Chr4g0414351

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000582
Physical Location & Seq
Forward (+)
38828071 .. 38848695
20625 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38478

Sequence Viewer

Length: 8502 bp
ATGGCCGGTTACCCTCATCACTTCCGCCCCTCCAGTGGGGACTGGAACTGGGCACACCCACCTCCTCACCTCTCCCGCCCACAATTTCCTTACCCCAATTTTCCTCCCCAAAACCCCACCAATTTAAACATCTATCCCCCTCAACCTCAACCGCCGCCGCCGCAACCGTCAAACCCTAATTTCCCCCTCCAACACCCTATAGACGTCAATATCTTTCCCGCCAACCACTATGGACACTCCTCATTTTCCAATTACTACCCAACCCCAACCCCAAGCTCTAATTTCTCTCTGCAAAACCCCCACTCCACTCCACCCTTCCCCCCTCAGAGCTTCTCCCGTAACCCTAACGAGGCGCCCGACCCGCCGAACCTCCCGAATTCGGCTAGGCATTTGCCTGAGGACCCGAGAGAGGTGCTCGAGAAGATCGACCGTGCGGTGGAGAGGCTTCGCGACGAGCTTGTCGCCGCCGGGAAGAACGTCTCGGCCTGGAAGGTGTTACAGTCTGCGCTTCTGATGCTCAGTGTTGATGCCGAGACTTGTTTGGGGCTCAAAGTTGAGCAAGTGCCGTCTCTTCACCGCCTCATGGTCACTGAAGGAAGGATAAATGCATTTATTCATTGCTTTGTTGGAGTTCGAACAATTACATCTTTGTATGATTTGGAAGTTGCAATCTGCAAGAATGAGGATATTGAGCAGTTTGAAGAGCTTGGATTGGGTCCTTTGTTGCAACACCCACTAGTTTTGCAATATTTCTCTGTGGATTCTGAAACAACTGAAGTCTTTAAGATATCTAGTGAGGAGATACTACATTTACTCAGTAGGTACCTAAAGAAGCCCAAAGTTAAGGAAAATTCTGTTGAGGGGTTCTTGGACTTCATTGTTACGAAGCGACCTGTTGCAGGCAAGGAAAAGCTTGGAATTCGAATATTTAGTTTGGGGGTGCATGCTTCTGCTATGCGTGAAGCCAAGGCTTCAGAACGTGCAGCTTTATGGAAATCATTACAGGAATTAAAGCAAAAGTCTCCCAAAATATCTAGGAGGAAGGCACCAATTTTCTCCTCGCTGAAAAAGCGGCTAGATAAACATTTTCGCGCCATTTCGCAGCAATCTGGATTGTGTTCTGTTGTGAATGGAAATGAAGATACACTTGTTTCTTCAAGATCAAAGGATGAAGGTATTAATGATTATTTACATGATGACAAAGGTAATGACCATGGTACTGGTGGTCATATTGACTCACTAAAATCCCTGAAAAGTTCTGACAGAAAGGGTAAGTGTTCTTACTTGTCTGAAGTGGAGGAGAGGTCTTCGCTCATGTCAAACCACCCTTCTCCAAGCCAAAAGCATAATGAGAGTAATGGGTCAGTTAAAAAGAAAAGAAAATACGAAAATCTAAGCTGCCCTATCTCTGTTCCCTCAAAGTTGCGCAAGAGAGAGAAGGTAGAGCAAGATGCTCTTCCTACAGAAAGTGACAGTGAAACTAAGGAGATCAGCGAGATGCTTAAACTTGATCTTTCAATTGCCAATAATCTTTTGAGGATGTTCATTACAACTTGGAAGGAGGCATGTAGGGAGCAGCCTGTGGCTGAGGTACTTTGGGCCATGCTTCGCTCTTGTAATACAAAATATAGGAGGACAAAGAGAATCATGGCAATGTTTTCGACATACCCTTTGGTTGGATTACTCAATGTTGCCGTCTCATCTATCAAATGTGGAATGTGGGATAATATGTTTGATACGTCCCAAACCATTAGTCCACGTGAGTTGGCTAACACTGTAACTGATAATTATCCTGAACATGTCGAACAAAGTATAAAGGATGCACCACCAGTCAGCACCGAACATGGACAAACCTCTTGCTGCCTGAAGCCAAATCATCAGGATCGTCCACGTCGGTGGAGGAAGATCCCAAGGAGTCGTAAGAAGTTGGAGCCTGAAAACGGACACATCTGCTACCTTTGTCATCAAGAGGGACATGTCAAGAGAAGATGCCCTCTGTGGCAGCAAACTAAAAAATCATCATATGAACCACAGAGTCCTCAACAATTGGCTCAGTATTCTATTTCCGGAGAAGAGGTGGAGGAGAAAGTCAGTGCTGTGGTGGATGACTCCACAGGTGTTTCAGTTAAAGAGATAATCCGGAAAGTTGCTACATATTTTGAGACTGATCAAGGAATGTCTAGCAATGGTAAATCACTTCCGGAGAAGATATTTATTTACTTCAGAAAGCTTTGGAATTGTGAGCTCTGGTTGACTGAAGAATTTTCTGTCAAGGAATTTAGATCCCTTGGTTATGGGGAATTTATGATGTTTTTAGAAAAGTATGCCCATCTTCTGCCACCGGAGATGTGCAAGTTCTTGAAAGATGACAGCAGTGGAAAGTTTCCTTTGGAGGTTTGCATGCTTCCGCATTATTTAGTTGTTTTGGTATCTCAAGCTTTAAACAATTTATGGGAGGACCAAAAGATTACCAAACTGAACATTTCTTCTCTGCTTGGGAAGCAGTTCCCGGCCCTTAGTTTCCATACCATTGAAAATGGTTCAGTAGAAGACTTTAAAAGTATAGTAGGAAAGCATAAAGACACTGCAATTTCCAAATGTGTACTATTTTCAATGACAATATGCGGAACTAGTTACACTATAGAATCATTGGAAAACTGTAGTAAGAATGCTGTATTGAAAAGCAGTTTGGTGAGTGTTGACAGTGGCCAGAAAATAAGCAATCAATCTGTTGCATCCAAGGAGGCAATTGCAGTCTTACTTAGGGCACCCATGATGTCAGATTTGAATTTATGGTCACATTGGGACCTCTTATTTGCTCCCTCTCTTGGCCCTCTTGTACCGTGGTTATTGAATGAAGTCAACACAGATGAATTACTCTGTTTGGTAACCAAAGATGGCAAAGTTATTCGGTTAGATCATTCAGCTACTGTAGATTCATTCTCGAAAGCTGCTCTTCAAGGATCCTCTTTTCAAACAGCAGTGAAAATGTTATCTCTCTTTTCACTGGTTGGGGGTAAAAAACATGTCCCCGTGTCCCTTTTGAAATTCCATGTACAGCGTGCATTTGAAGTTATTTTCAAGACCTATCTAGATGGTATGGAAGTATATGACAAGAAGAGTTCTCTTAATCAAGGAACAGTTTTGTGTGGACAGAAAATGGTTGTTGAAATTGCTGCTGGTAAAGGCAGTAACTTACACGGAGCTGTAACGAAGACGAAAATTGCTGAGTCTGTTATATCACATTTTTTTCTTGATTGCCTGGGGTATCTACCTGCAGAGTTTCGCAGTTTTGCTGCTGATGTGTTACTTTCTGGGATGCGGTCTGTTTTTAAGCATGCAGCTTCAGCCATTTTGGATGAATGCATCCAAATAGAGCAGCGTCTCATACTTCATGAAGTTGGCTTATCTCTTGGTATAGTGGAGTGGATTAGTGATTACCATGTATTTAGTTCCTTGGATTCTACCGATTCGTTCATGTCTGAGGTTTCTGGTCTCAATGCTGATAGAGATCAAATGGGGTCAGACTCAAAATATATGCAAAATGTGTCAAAAAAGTTGGCTGCTTCTGAACAGAGTATGGCTGCATCTGTTAGGGCAGTTGAGCATAAAGGAGGATGTGCTGATGTTAGCCGGATGGTTGATGGTGCAGGAGTTTCTGATGCTGGGATTGGCATTGGCATTGGTTACAGACAACATCCTACTAATATTAATGAACATGAAGATGCTCTCCAGGTTATTGAGTCAATCAGGAGAGATGAATTCGGTTTGGATTCAAGCCCATTGACCTTTGAAAGTATCGTCTTAAAGAAACAGCATGCTCGCTTAGGGAGAGCTCTGCACTGTCTTTCACAGGAATTATATTCTCAAGATTCTCATTTTCTTCTTGAGCTGGTTCAAAATGCTGATGATAATACTTATCCAACAAATATAGAACCAACTCTAGCATTCATTCTTCAAGAATCAGGTATTGTTGTTTTGAATAATGAGCAAGGCTTCTCTGCCCAGAACATTAGAGCACTTTGTGATGTTGGAAATTCAACCAAGAAAGGATCCAGTGCCGGATATATAGGGCAAAAGGGCATCGGTTTCAAATCAGTATTTCGTGTCACAGATGCTCCAGAAATTCATTCTAATGGATTTCATATCAAGTTTGATACAAGTGAGGGTCAGATTGGTTTAATTCTGCCCACAGTTGTACCTCCTTGCAATCTTGAGTTGTTTAGACAGCTGACATCTAGTGACATTGATAAACCAGATTGTTACTGCTGGAAAACTTGTATTGTTCTTCCTTTCAGATCGAAAGTATCAGATGGAACTGTCTTGAACCACATAATGAATATGTTTTCAGATCTTCATCCATCTTTACTACTCTTTCTTCACCGCCTCAAGTGTATCCGGTTTAGAAACCTAATCGATGATTCACTTACTGTCATGAGAAAAGAAATTGTAGGAGACGGTATTGTCAAGGTTTCACATGGTAATACGAAGATGACATGGTTTGTAGTATCTCAAAAATTGCACTCAGATAATCTTCGTAGTGATGTGCAAACAACAGAAATCTCAATTGCTTTTACATTGAAGGAATCGGATAAGGGCATTTATCGTCCAGATATAGGCCAACAGCCTGTTTTTGCATTTCTTCCTCTTAGAACATACGGACTGAAATTTATTGTTCAGGGTGATTTTGTTCTTCCTTCATCCAGAGAGGAAGTGGATGGAGATAGTCCCTGGAACCAATGGCTATTGTCAGAATTTCCTGGTTTATTTGTCGATGCAGAGAAATCATTTTGTTCTCTTCCATGTTTCAAAGAGAATCCTGGGACTGCTGTGGCAGCTTACATGTCCTTTGTTCCACTTGTTGGGGAAGTGCATGGTTTCTTTTCTTCTCTTCCTCGATTAATTATTTCTAAATTACGGATGTCAAATTGCTTACTTCAGGAAGGAGAAAAGAAAGAATGGGTTCCTCCTTGCAAGGTCCTAAGAAATTGGAATAAACAGGCTCGTTCACTTCTCCCTGATGGTCTACTGCATGAGCATCTTGGCCTTGGATTCTTGGATAAAGATATAGTTCTGCCTGATCCACTTGCAAGAGTTCTAGGTATTGCAGAGTATGGGCCCACAGTTCTGCTTCAGGTAATGGCTTCTTTATGTGGTAAGCAGGATGGCCTCAAATCAATGGGAATGGGTTGGATGGCCTCTTTGCTTAGTGAACTTTATGCAATGTCATTCAAATCTTCTGTTGAAACTTCCTTTGATTCTGGAATAGAAATGGGATTCCTAGAAAAACTTCAAAAAATTCCATTCATACCTCTTTCAGATGGTACATATGGTGCAGTCGTTGAAGGCCCAATTTGGCTACAGTTTGATGCCGTAGGGACTGGTTTTGGGGATCATCATGGACTTGAATCTTTTCCAAAGTTATATGCTAAACTTCGGATTGTAAGTCCGGAGCTCTATGCATCGTCTGCTGATATGCCATCCATGGATGTGACGCCAATTGACAAAGTCATTAGTATGCTCCATAGAATTGGTGTCCAACGGTTGTCCGCACACGAGATTCTCAAGGCTCACATCTTGCCAGCTATATCTGATGATAGAATTACAGTTAGGGATGAAGATTTGATGACTGATTATATCTGCTTCGCAATGGTTCACTTACAGTCGAGCTGCTCTGATTGTCATGCTGAAAGGGAATACATAATATCAGAACTACAAAATAAAGCTTATATTCTAACTAATAATGGCTTTAAACGACCTGCTGAGGCATCAATTCATTTCAGTAAAGAATTTGGAAATCCAGTGGACATAAGTAGGTTGATTGATAGGGTAAATCTGACATGGGATGAGGTTGATATCTCCTATTTGAAGCATCCAGTTGCTAAATCACTTCCAAATGGACTGATGAAGTGGAGAGATTTTTTCCAGAAAATTGGCATTGTGGATTTTGTGAAGGTAGTTCAAGTTGAGAAGGGTTTCACTGAGTTGTCTGAGGCTCTATTTAATAATCTAACTTGGGACCAGCATACTATTTCCCATGGGTTGAATGCCACAGATTGGGAATCACCTGAGTTAGTCCATTTATTATCCCTATTGTCCAGAGATGGCAACAGAAAAGGTTGTGAGTATCTCTTAGAGGTTCTCGATAAATTATGGGATGATTGCTATAGTGACAGAGCTACAGGGTACTGCTCTTCTAAGTCTGTTGCAGATAGAAAGCCCTTCAAATCTTCATTTATGAGCACCATCTGCGATGTGCAATGGGTAGTATCAGGAATGGATGATAAACTTCACTATCCCAAGGATCTATATCACGACAGTGTTGCAGTGCGGTCAATTCTTGGTGGATCTGCCCCTTTTTTTGTTCCTAAGGCTACCAGTGAAAAATTTGTATTTGATATTGGTTTTAAGACAAGAGTCTCTCTTCACGATGCTCTGGAGATGTTGAAACTATGGAGATGTGAGAATCCGTTTAGGGCCAGCCTAGCACAAATGTCCAAATTTTACTCATTAATCTGGAATGAAATGGCTTCTTCAAAGAAGACAACTGCAGAGGAATTCTGTTTGGAACCTTTTGTATTTGTTCCATATGAATCTAGCTTCCGGCATGAGGATGTGGTGTCTGGTACATTTCTGTCCCTTGAAGAAGTATACTGGGATGATTCTACTTTCTTTGTGGACCAAATCAAGGAGATCCATCATCAGTGCAACTCAACAGTTGGTAATCGCCCCATAAACAGGATTCTGAGTAATTTCTACCCGGCCCTTCATGACTTCTTTGTTGATATATGTGGAGTACATGAGATCCCTCCTCTTCGTAGCTACCTTCAGATTTTGCTACAGTTTTCAAATGCTGTTTTGCCTTCACAAGCAGCTAATGCTGTTTTTCAAGTTTTTCAGAAGTGGGCTGATGGGCTCCAATCAGGAATGAGTGCTGAGGATATTGTATACTTGAAAGATTCGCTTACAAGGATGGAATGTACTGTGCTTCCTACTGTACAGGATAAGTGGGTATCTCTGCATCCTTCCTATGGTCTCCTGTGCTGGTGTGATGATAAGATGTTGAAGAAGCAGTTTATGCATATGGATGGACTTGATTTTCTTTACTCTGGTGGACTAAGTAATGATGATGAAGAGATCATAAGTACAAAAATGTCCGTCCTCATGCGAACCTTAGGGATTTCTGCACTTTCAGAGGTTGTGACTCGTGAGGCGATGTTTAATGGTCTGACAGATTCTAGCTTTAAAGCTGCATTGCTGGATTGGGCTCTGCCATATGCGCAGCGCTACTTACATAGTTTACATCCTGATAAATATTCTCAACTCAAGCAGTCTGGATTCGATATACTAAATCGTTTGCGAGTAGTAGAAGTTCAAAAGCTGTCCTACCGCAATGTTATAAAGATTGCTGGAAGTGAATCCAAGAAGCAAATCGAATGTAGTTGTGTTCTGCAGGATCACGATCTGTATACAACCCAGGAATCAGATTCTCACGCATTATTTATGGAGCTTTCTCGTTTGTTTTTTGATGGAAAACCAGAATTACACTTGGCAAATTTCCTTCATATGATCACAACAATGGCTGAATCAGGTTCAACTGAGGAGCAGATAGACTTTTTCATCTTCAATAGCCAAAAGGTGCCAAAGCTTCCTGATGGAGAATCTGTTTGGTCCCTGTCACATGTGCATAATGATAGGTTACCCCAGCCAAGTGACTGGCGCTTTGTTGGTTGGAAAGCCCCACTAAGCTTTGGTTATGCAAATCTTTTCAAGGCTCAGGCACAATTTGCACAGCTTACCAGTGTCTCACAAATTGAAATGGATAATGATTCTGAAACCCATGTCAGACAAACAGTTGAATCAACTCCCATTTCAGTCGACATTAAATGGACAATTGGTGAGGGTACAGCAACAACATCTGCACCTTTAGTGCTGCCAAACTCCAATGATTTGCAGGAACACTTTGATGATGAGACTGATATGGATACTGATTTCAATCCTAATAATCTAGATTTTGTTGTTGACCCTCGCGTTTTGGGTTCATCTGATTGTAGCAAGGTAGACCATCCTAGATATGGCTCTAGTGGAAGAGATTCAATGCGTGGAAGAGATGCAATGCTTACCGGGAGGTTAGGTGAGGTTGTTGCTTTTAAATACTTAATTGCAAAAGCTGGCAAGTCAGTTGTGAGGTGGGTTAATGAAAGAATTGAAACTGGGCTACCCTATGACATAGTTGTAGGTGAGAAGGAAGATAGTCTAGAGTTCATTGAGGTTAAGGCCACCCAACAACAAAAAAAGGATTGGTTCCACATATCAATGAGGGAGTGGCAATTTGCAGCGGAAAAAGGTGAAGCCTTCAGCATTTTGCACGTCCTCTTATTGGGTAATAATGCTGCAAGAGTCTCAGTTTACAAGAATCCTGTAAAATTGTGTCATCTGGGCAAGCTACAGTTGCATCTTTCGATGCCTAGGCAGGAGAAGGAATTATTTCTTGTGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3883

Protein Analysis

2833

Amino Acids

318.71

Weight (kDa)

6.11

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SACS PF25794 1292 - 1392 2.6e-08 Sacsin domain
NOV_C PF13020 2712 - 2798 1.8e-19 Protein NO VEIN, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08300 AT1G08300 AT1G08300 AT4G13750
fragaria_vesca FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_4g13620 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660
malus_domestica MD04G1012800.v1.1 MD04G1012900.v1.1 MD04G1013100.v1.1 MD04G1013300.v1.1
prunus_persica Prupe.1G159000_v2.0.a1 Prupe.1G159100_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G358100_v2.0.a1
pyrus_communis pycom04g01020 pycom04g01030
rosa_chinensis RchiOBHm_Chr4g0414341 RchiOBHm_Chr4g0414351 RchiOBHm_Chr6g0275261 RchiOBHm_Chr7g0213881 RchiOBHm_Chr7g0213891
rosa_laevigata RLG00000008153 RLG00000008155 RLG00000013477
rosa_multiflora Rmu_co8510163.1_g000001 Rmu_sc0004087.1_g000027 Rmu_sc0005196.1_g000014 Rmu_sc0005558.1_g000005 Rmu_sc0005558.1_g000006 Rmu_sc0008100.1_g000005 Rmu_sc0008560.1_g000005
rosa_roxburghii Rroxscaffold_5G00358210 Rroxscaffold_5G00358220 Rroxscaffold_7G00187920 Rroxscaffold_7G00187930 Rroxscaffold_7G00193450
rosa_rugosa Rorug04G0127100 Rorug04G0127200 Rorug04G0127300 Rorug04G0127400 Rorug06G0090600
rosa_samantha Rh4AG185200 Rh4AG185300 Rh4AG185500 Rh4BG184700 Rh4BG184800 Rh4CG198000 Rh4CG198100 Rh4DG182400 Rh4DG182600 Rh6AG204100 Rh6BG207000 Rh6CG209600 Rh6DG200000 Rh7AG277400 Rh7CG296400 Rh7CG296500
rosa_wichuraiana Rw4G015850 Rw4G015860 Rw6G017730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 7400
AasI GACNNNNNNGTC 2 cut(s) 458, 4463
AatII GACGTC 1 cut(s) 207
Acc16I TGCGCA 2 cut(s) 1427, 7281
Acc36I ACCTGC 2 cut(s) 3283, 5767
Acc65I GGTACC 1 cut(s) 822
AccB1I GGYRCC 5 cut(s) 352, 822, 1045, 2767, 7639
AccB7I CCANNNNNTGG 2 cut(s) 4862, 6057
AccI GTMKAC 6 cut(s) 5026, 6651, 6948, 7469, 7878, 8061
AccII CGCG 3 cut(s) 450, 1092, 8031
AccIII TCCGGA 4 cut(s) 2066, 2139, 2200, 5449
AcoI YGGCCR 2 cut(s) 3, 2707
AcvI CACGTG 1 cut(s) 1760
AcyI GRCGYC 3 cut(s) 204, 353, 5495
AdeI CACNNNGTG 1 cut(s) 4025
AfeI AGCGCT 1 cut(s) 7286
AflIII ACRYGT 5 cut(s) 1798, 1975, 3025, 4842, 7681
AhlI ACTAGT 2 cut(s) 736, 2630
AjiI CACGTC 2 cut(s) 1892, 8371
AjnI CCWGG 7 cut(s) 485, 3261, 3732, 4730, 4759, 4819, 7476
AjuI GAANNNNNNNTTGG 2 cut(s) 2672, 2704
AleI CACNNNNGTG 2 cut(s) 1894, 6318
Alw21I GWGCWC 6 cut(s) 417, 2247, 3838, 4021, 5457, 6245
AlwNI CAGNNNCTG 1 cut(s) 2930
Ama87I CYCGRG 2 cut(s) 403, 416
Aor13HI TCCGGA 4 cut(s) 2066, 2139, 2200, 5449
Aor51HI AGCGCT 1 cut(s) 7286
ApaI GGGCCC 1 cut(s) 5121
ArsI GACNNNNNNTTYG 8 cut(s) 1654, 1686, 1738, 1770, 2798, 2830, 7706, 7738
AseI ATTAAT 4 cut(s) 1179, 3711, 4901, 6512
Asp700I GAANNNNTTC 7 cut(s) 2504, 4962, 5289, 5412, 5975, 8092, 8487
Asp718I GGTACC 1 cut(s) 822
AspA2I CCTAGG 1 cut(s) 8468
AspLEI GCGC 7 cut(s) 355, 508, 1094, 1428, 7282, 7287, 7722
AsuC2I CCSGG 4 cut(s) 469, 2510, 6761, 8125
AsuII TTCGAA 2 cut(s) 634, 922
AvaI CYCGRG 2 cut(s) 403, 416
AvaII GGWCC 8 cut(s) 400, 716, 2458, 2806, 4978, 6019, 6679, 7671
AvrII CCTAGG 1 cut(s) 8468
AxyI CCTNAGG 3 cut(s) 396, 6369, 7174
BaeGI GKGCMC 3 cut(s) 55, 2770, 5121
BaeI ACNNNNGTAYC 4 cut(s) 1134, 1167, 4182, 4215
BalI TGGCCA 1 cut(s) 2709
BamHI GGATCC 2 cut(s) 2963, 4052
BanI GGYRCC 5 cut(s) 352, 822, 1045, 2767, 7639
BanII GRGCYC 7 cut(s) 549, 2247, 3838, 5121, 5457, 6918, 7270
BauI CACGAG 2 cut(s) 5555, 7206
BbrPI CACGTG 1 cut(s) 1760
BbsI GAAGAC 4 cut(s) 1299, 2556, 3221, 6548
Bbv12I GWGCWC 6 cut(s) 417, 2247, 3838, 4021, 5457, 6245
BbvCI CCTCAGC 3 cut(s) 1587, 5763, 6936
BceAI ACGGC 3 cut(s) 550, 1679, 5357
BcgI CGANNNNNNTGC 6 cut(s) 394, 428, 1641, 1675, 6305, 6339
BciT130I CCWGG 7 cut(s) 487, 3263, 3734, 4732, 4761, 4821, 7478
BciVI GTATCC 2 cut(s) 4406, 7978
BclI TGATCA 2 cut(s) 2167, 7569
BcnI CCSGG 4 cut(s) 469, 2510, 6761, 8125
BcuI ACTAGT 2 cut(s) 736, 2630
BfoI RGCGCY 3 cut(s) 356, 7288, 7723
BfuAI ACCTGC 2 cut(s) 3283, 5767
BfuI GTATCC 2 cut(s) 4406, 7978
BglII AGATCT 1 cut(s) 4351
BlnI CCTAGG 1 cut(s) 8468
Bme18I GGWCC 8 cut(s) 400, 716, 2458, 2806, 4978, 6019, 6679, 7671
BmeT110I CYCGRG 2 cut(s) 403, 416
BmgBI CACGTC 2 cut(s) 1892, 8371
BmrI ACTGGG 3 cut(s) 58, 6664, 8223
BmuI ACTGGG 3 cut(s) 58, 6664, 8223
BoxI GACNNNNGTC 1 cut(s) 6416
BpiI GAAGAC 4 cut(s) 1299, 2556, 3221, 6548
BplI GAGNNNNNCTC 2 cut(s) 399, 431
BpmI CTGGAG 4 cut(s) 16, 3716, 4104, 6458
Bpu10I CCTNAGC 5 cut(s) 1587, 3826, 5763, 6936, 7776
Bpu14I TTCGAA 2 cut(s) 634, 922
BpuEI CTTGAG 7 cut(s) 2418, 3852, 3908, 4235, 4373, 5549, 7310
BpuMI CCSGG 4 cut(s) 469, 2510, 6761, 8125
Bsa29I ATCGAT 1 cut(s) 4416
BsaAI YACGTR 1 cut(s) 1760
BsaBI GATNNNNATC 6 cut(s) 1788, 3510, 4356, 6309, 7461, 7995
BsaHI GRCGYC 3 cut(s) 204, 353, 5495
BsaI GGTCTC 2 cut(s) 3500, 7040
BsaWI WCCGGW 6 cut(s) 2066, 2139, 2200, 2341, 4398, 5449
Bse118I RCCGGY 1 cut(s) 5
Bse21I CCTNAGG 3 cut(s) 396, 6369, 7174
Bse3DI GCAATG 9 cut(s) 616, 1659, 2191, 5229, 5655, 6266, 7253, 7399, 8121
Bse8I GATNNNNATC 6 cut(s) 1788, 3510, 4356, 6309, 7461, 7995
BseAI TCCGGA 4 cut(s) 2066, 2139, 2200, 5449
BseBI CCWGG 7 cut(s) 487, 3263, 3734, 4732, 4761, 4821, 7478
BseCI ATCGAT 1 cut(s) 4416
BseJI GATNNNNATC 6 cut(s) 1788, 3510, 4356, 6309, 7461, 7995
BseMI GCAATG 9 cut(s) 616, 1659, 2191, 5229, 5655, 6266, 7253, 7399, 8121
BseRI GAGGAG 8 cut(s) 54, 229, 812, 1048, 1313, 2096, 6801, 7616
BseSI GKGCMC 3 cut(s) 55, 2770, 5121
BseYI CCCAGC 2 cut(s) 3665, 7704
BsgI GTGCAG 6 cut(s) 1002, 3669, 3824, 5355, 7170, 7905
Bsh1236I CGCG 3 cut(s) 450, 1092, 8031
Bsh1285I CGRYCG 1 cut(s) 430
BshNI GGYRCC 5 cut(s) 352, 822, 1045, 2767, 7639
BshVI ATCGAT 1 cut(s) 4416
BsiEI CGRYCG 1 cut(s) 430
BsiHKAI GWGCWC 6 cut(s) 417, 2247, 3838, 4021, 5457, 6245
BsiHKCI CYCGRG 2 cut(s) 403, 416
BsmBI CGTCTC 5 cut(s) 484, 573, 1702, 3389, 4449
BsmI GAATGC 4 cut(s) 2674, 3368, 3947, 6052
Bso31I GGTCTC 2 cut(s) 3500, 7040
BsoBI CYCGRG 2 cut(s) 403, 416
Bsp119I TTCGAA 2 cut(s) 634, 922
Bsp120I GGGCCC 1 cut(s) 5117
Bsp13I TCCGGA 4 cut(s) 2066, 2139, 2200, 5449
Bsp1407I TGTACA 2 cut(s) 3055, 6997
Bsp19I CCATGG 3 cut(s) 1213, 5484, 6037
Bsp68I TCGCGA 1 cut(s) 450
BspDI ATCGAT 1 cut(s) 4416
BspEI TCCGGA 4 cut(s) 2066, 2139, 2200, 5449
BspFNI CGCG 3 cut(s) 450, 1092, 8031
BspHI TCATGA 3 cut(s) 3394, 4434, 6769
BspMAI CTGCAG 3 cut(s) 3280, 6553, 7455
BspMI ACCTGC 2 cut(s) 3283, 5767
BspQI GCTCTTC 4 cut(s) 696, 1461, 2961, 6199
BspT104I TTCGAA 2 cut(s) 634, 922
BspT107I GGYRCC 5 cut(s) 352, 822, 1045, 2767, 7639
BspTNI GGTCTC 2 cut(s) 3500, 7040
BsrDI GCAATG 9 cut(s) 616, 1659, 2191, 5229, 5655, 6266, 7253, 7399, 8121
BsrFI RCCGGY 1 cut(s) 5
BsrGI TGTACA 2 cut(s) 3055, 6997
BssAI RCCGGY 1 cut(s) 5
BssNAI GTATAC 3 cut(s) 6652, 6949, 7470
BssNI GRCGYC 3 cut(s) 204, 353, 5495
BssSI CACGAG 2 cut(s) 5555, 7206
Bst1107I GTATAC 3 cut(s) 6652, 6949, 7470
Bst2BI CACGAG 2 cut(s) 5555, 7206
Bst2UI CCWGG 7 cut(s) 487, 3263, 3734, 4732, 4761, 4821, 7478
BstACI GRCGYC 3 cut(s) 204, 353, 5495
BstAPI GCANNNNNTGC 5 cut(s) 5468, 6249, 6878, 7078, 7787
BstAUI TGTACA 2 cut(s) 3055, 6997
BstBAI YACGTR 1 cut(s) 1760
BstBI TTCGAA 2 cut(s) 634, 922
BstDSI CCRYGG 4 cut(s) 1213, 2843, 5484, 6037
BstEII GGTNACC 3 cut(s) 8, 2887, 7698
BstENI CCTNNNNNAGG 1 cut(s) 897
BstFNI CGCG 3 cut(s) 450, 1092, 8031
BstH2I RGCGCY 3 cut(s) 356, 7288, 7723
BstHHI GCGC 7 cut(s) 355, 508, 1094, 1428, 7282, 7287, 7722
BstMCI CGRYCG 1 cut(s) 430
BstNI CCWGG 7 cut(s) 487, 3263, 3734, 4732, 4761, 4821, 7478
BstPAI GACNNNNGTC 1 cut(s) 6416
BstPI GGTNACC 3 cut(s) 8, 2887, 7698
BstSLI GKGCMC 3 cut(s) 55, 2770, 5121
BstUI CGCG 3 cut(s) 450, 1092, 8031
BstV2I GAAGAC 4 cut(s) 1299, 2556, 3221, 6548
BstX2I RGATCY 9 cut(s) 1905, 2282, 2963, 4052, 4351, 6304, 6347, 6693, 6804
BstXI CCANNNNNNTGG 5 cut(s) 1220, 1896, 5531, 5933, 7716
BstYI RGATCY 9 cut(s) 1905, 2282, 2963, 4052, 4351, 6304, 6347, 6693, 6804
BstZ17I GTATAC 3 cut(s) 6652, 6949, 7470
Bsu15I ATCGAT 1 cut(s) 4416
Bsu36I CCTNAGG 3 cut(s) 396, 6369, 7174
BsuI GTATCC 2 cut(s) 4406, 7978
BsuTUI ATCGAT 1 cut(s) 4416
BtgI CCRYGG 4 cut(s) 1213, 2843, 5484, 6037
BtgZI GCGATG 2 cut(s) 6267, 7229
BtrI CACGTC 2 cut(s) 1892, 8371
BtsI GCAGTG 4 cut(s) 2380, 2583, 2988, 6333
BtuMI TCGCGA 1 cut(s) 450
BveI ACCTGC 2 cut(s) 3283, 5767
CaiI CAGNNNCTG 1 cut(s) 2930
CciI TCATGA 3 cut(s) 3394, 4434, 6769
CfoI GCGC 7 cut(s) 355, 508, 1094, 1428, 7282, 7287, 7722
Cfr10I RCCGGY 1 cut(s) 5
ClaI ATCGAT 1 cut(s) 4416
CseI GACGC 2 cut(s) 3371, 5503
CspCI CAANNNNNGTGG 4 cut(s) 723, 758, 1746, 1781
DinI GGCGCC 1 cut(s) 354
DraI TTTAAA 6 cut(s) 126, 2442, 2557, 5752, 7246, 8152
DraIII CACNNNGTG 1 cut(s) 4025
DrdI GACNNNNNNGTC 2 cut(s) 458, 4463
DseDI GACNNNNNNGTC 2 cut(s) 458, 4463
EaeI YGGCCR 2 cut(s) 3, 2707
EciI GGCGGA 1 cut(s) 14
Ecl136II GAGCTC 3 cut(s) 2245, 3836, 5455
Eco24I GRGCYC 7 cut(s) 549, 2247, 3838, 5121, 5457, 6918, 7270
Eco31I GGTCTC 2 cut(s) 3500, 7040
Eco32I GATATC 2 cut(s) 789, 5857
Eco47I GGWCC 8 cut(s) 400, 716, 2458, 2806, 4978, 6019, 6679, 7671
Eco47III AGCGCT 1 cut(s) 7286
Eco53kI GAGCTC 3 cut(s) 2245, 3836, 5455
Eco72I CACGTG 1 cut(s) 1760
Eco81I CCTNAGG 3 cut(s) 396, 6369, 7174
Eco88I CYCGRG 2 cut(s) 403, 416
Eco91I GGTNACC 3 cut(s) 8, 2887, 7698
EcoICRI GAGCTC 3 cut(s) 2245, 3836, 5455
EcoNI CCTNNNNNAGG 1 cut(s) 897
EcoO109I RGGNCCY 4 cut(s) 400, 716, 2806, 4978
EcoO65I GGTNACC 3 cut(s) 8, 2887, 7698
EcoRI GAATTC 4 cut(s) 376, 918, 3761, 6557
EcoRII CCWGG 7 cut(s) 485, 3261, 3732, 4730, 4759, 4819, 7476
EcoRV GATATC 2 cut(s) 789, 5857
EcoT22I ATGCAT 4 cut(s) 610, 3368, 5464, 7083
EcoT38I GRGCYC 7 cut(s) 549, 2247, 3838, 5121, 5457, 6918, 7270
EgeI GGCGCC 1 cut(s) 354
EheI GGCGCC 1 cut(s) 354
Esp3I CGTCTC 5 cut(s) 484, 573, 1702, 3389, 4449
FalI AAGNNNNNCTT 8 cut(s) 1131, 1163, 1440, 1472, 2940, 2972, 6948, 6980
FauI CCCGC 3 cut(s) 83, 226, 369
FauNDI CATATG 6 cut(s) 2023, 5329, 6589, 7083, 7276, 7566
FbaI TGATCA 2 cut(s) 2167, 7569
FblI GTMKAC 6 cut(s) 5026, 6651, 6948, 7469, 7878, 8061
FriOI GRGCYC 7 cut(s) 549, 2247, 3838, 5121, 5457, 6918, 7270
FspI TGCGCA 2 cut(s) 1427, 7281
GlaI GCGC 7 cut(s) 354, 507, 1093, 1427, 7281, 7286, 7721
GsaI CCCAGC 2 cut(s) 3669, 7708
GsuI CTGGAG 4 cut(s) 16, 3716, 4104, 6458
HaeII RGCGCY 3 cut(s) 356, 7288, 7723
HgaI GACGC 2 cut(s) 3371, 5503
HhaI GCGC 7 cut(s) 355, 508, 1094, 1428, 7282, 7287, 7722
Hin1I GRCGYC 3 cut(s) 204, 353, 5495
Hin6I GCGC 7 cut(s) 353, 506, 1092, 1426, 7280, 7285, 7720
HinP1I GCGC 7 cut(s) 353, 506, 1092, 1426, 7280, 7285, 7720
HincII GTYRAC 5 cut(s) 2253, 2701, 2863, 7879, 8023
HindII GTYRAC 5 cut(s) 2253, 2701, 2863, 7879, 8023
HindIII AAGCTT 6 cut(s) 911, 2228, 2436, 5724, 7646, 7747
Hpy99I CGWCG 2 cut(s) 455, 1896
HpyCH4IV ACGT 7 cut(s) 204, 477, 979, 1739, 1759, 1891, 8370
HpySE526I ACGT 7 cut(s) 204, 477, 979, 1739, 1759, 1891, 8370
Hsp92I GRCGYC 3 cut(s) 204, 353, 5495
HspAI GCGC 7 cut(s) 353, 506, 1092, 1426, 7280, 7285, 7720
KasI GGCGCC 1 cut(s) 352
Kpn2I TCCGGA 4 cut(s) 2066, 2139, 2200, 5449
KpnI GGTACC 1 cut(s) 826
Ksp22I TGATCA 2 cut(s) 2167, 7569
LguI GCTCTTC 4 cut(s) 696, 1461, 2961, 6199
MaeII ACGT 7 cut(s) 204, 477, 979, 1739, 1759, 1891, 8370
MfeI CAATTG 6 cut(s) 1518, 2045, 2748, 4566, 5499, 7893
MflI RGATCY 9 cut(s) 1905, 2282, 2963, 4052, 4351, 6304, 6347, 6693, 6804
MlsI TGGCCA 1 cut(s) 2709
MluNI TGGCCA 1 cut(s) 2709
Mly113I GGCGCC 1 cut(s) 353
MmeI TCCRAC 9 cut(s) 214, 607, 1657, 1908, 3947, 4012, 5171, 5563, 7712
Mox20I TGGCCA 1 cut(s) 2709
Mph1103I ATGCAT 4 cut(s) 610, 3368, 5464, 7083
MroI TCCGGA 4 cut(s) 2066, 2139, 2200, 5449
MroXI GAANNNNTTC 7 cut(s) 2504, 4962, 5289, 5412, 5975, 8092, 8487
MscI TGGCCA 1 cut(s) 2709
Msp20I TGGCCA 1 cut(s) 2709
MspA1I CMGCKG 2 cut(s) 4231, 8339
MteI GCGCNGCGC 1 cut(s) 7283
MunI CAATTG 6 cut(s) 1518, 2045, 2748, 4566, 5499, 7893
Mva1269I GAATGC 4 cut(s) 2674, 3368, 3947, 6052
MvaI CCWGG 7 cut(s) 487, 3263, 3734, 4732, 4761, 4821, 7478
MvnI CGCG 3 cut(s) 450, 1092, 8031
NarI GGCGCC 1 cut(s) 353
NciI CCSGG 4 cut(s) 469, 2510, 6761, 8125
NcoI CCATGG 3 cut(s) 1213, 5484, 6037
NdeI CATATG 6 cut(s) 2023, 5329, 6589, 7083, 7276, 7566
NmeAIII GCCGAG 2 cut(s) 461, 556
NruI TCGCGA 1 cut(s) 450
NsbI TGCGCA 2 cut(s) 1427, 7281
NsiI ATGCAT 4 cut(s) 610, 3368, 5464, 7083
NspV TTCGAA 2 cut(s) 634, 922
OliI CACNNNNGTG 2 cut(s) 1894, 6318
PaeI GCATGC 4 cut(s) 947, 2404, 3341, 3821
PaeR7I CTCGAG 1 cut(s) 416
PagI TCATGA 3 cut(s) 3394, 4434, 6769
PciI ACATGT 5 cut(s) 1798, 1975, 3025, 4842, 7681
PciSI GCTCTTC 4 cut(s) 696, 1461, 2961, 6199
PcsI WCGNNNNNNNCGW 2 cut(s) 354, 423
PctI GAATGC 4 cut(s) 2674, 3368, 3947, 6052
PdmI GAANNNNTTC 7 cut(s) 2504, 4962, 5289, 5412, 5975, 8092, 8487
PflFI GACNNNGTC 1 cut(s) 5507
PflMI CCANNNNNTGG 2 cut(s) 4862, 6057
PluTI GGCGCC 1 cut(s) 356
PmaCI CACGTG 1 cut(s) 1760
PmlI CACGTG 1 cut(s) 1760
Ppu21I YACGTR 1 cut(s) 1760
PpuMI RGGWCCY 4 cut(s) 400, 716, 2806, 4978
PscI ACATGT 5 cut(s) 1798, 1975, 3025, 4842, 7681
PshAI GACNNNNGTC 1 cut(s) 6416
PshBI ATTAAT 4 cut(s) 1179, 3711, 4901, 6512
PsiI TTATAA 1 cut(s) 7400
Psp124BI GAGCTC 3 cut(s) 2247, 3838, 5457
Psp5II RGGWCCY 4 cut(s) 400, 716, 2806, 4978
Psp6I CCWGG 7 cut(s) 485, 3261, 3732, 4730, 4759, 4819, 7476
PspCI CACGTG 1 cut(s) 1760
PspEI GGTNACC 3 cut(s) 8, 2887, 7698
PspFI CCCAGC 2 cut(s) 3665, 7704
PspGI CCWGG 7 cut(s) 485, 3261, 3732, 4730, 4759, 4819, 7476
PspOMI GGGCCC 1 cut(s) 5117
PspPPI RGGWCCY 4 cut(s) 400, 716, 2806, 4978
PsrI GAACNNNNNNTAC 2 cut(s) 7356, 7388
PstI CTGCAG 3 cut(s) 3280, 6553, 7455
PstNI CAGNNNCTG 1 cut(s) 2930
PsuI RGATCY 9 cut(s) 1905, 2282, 2963, 4052, 4351, 6304, 6347, 6693, 6804
PsyI GACNNNGTC 1 cut(s) 5507
PvuII CAGCTG 1 cut(s) 4231
RruI TCGCGA 1 cut(s) 450
SacI GAGCTC 3 cut(s) 2247, 3838, 5457
SalI GTCGAC 1 cut(s) 7877
SapI GCTCTTC 4 cut(s) 696, 1461, 2961, 6199
SfoI GGCGCC 1 cut(s) 354
Sfr274I CTCGAG 1 cut(s) 416
SfuI TTCGAA 2 cut(s) 634, 922
SinI GGWCC 8 cut(s) 400, 716, 2458, 2806, 4978, 6019, 6679, 7671
SlaI CTCGAG 1 cut(s) 416
SmlI CTYRAG 8 cut(s) 416, 2433, 3867, 3887, 4214, 4388, 5564, 7325
SmoI CTYRAG 8 cut(s) 416, 2433, 3867, 3887, 4214, 4388, 5564, 7325
SpeI ACTAGT 2 cut(s) 736, 2630
SphI GCATGC 4 cut(s) 947, 2404, 3341, 3821
SspDI GGCGCC 1 cut(s) 352
SspI AATATT 4 cut(s) 749, 927, 3709, 7316
SstI GAGCTC 3 cut(s) 2247, 3838, 5457
TaiI ACGT 7 cut(s) 207, 480, 982, 1742, 1762, 1894, 8373
TatI WGTACW 6 cut(s) 2602, 3055, 6796, 6980, 6997, 7145
TauI GCSGC 5 cut(s) 157, 160, 163, 467, 1075
TspGWI ACGGA 6 cut(s) 1956, 3216, 4674, 4933, 6459, 7147
Tth111I GACNNNGTC 1 cut(s) 5507
Van91I CCANNNNNTGG 2 cut(s) 4862, 6057
VpaK11BI GGWCC 8 cut(s) 400, 716, 2458, 2806, 4978, 6019, 6679, 7671
VspI ATTAAT 4 cut(s) 1179, 3711, 4901, 6512
XagI CCTNNNNNAGG 1 cut(s) 897
XbaI TCTAGA 3 cut(s) 3091, 8008, 8257
XcmI CCANNNNNNNNNTGG 3 cut(s) 1220, 4711, 8072
XhoI CTCGAG 1 cut(s) 416
XmaJI CCTAGG 1 cut(s) 8468
XmiI GTMKAC 6 cut(s) 5026, 6651, 6948, 7469, 7878, 8061
XmnI GAANNNNTTC 7 cut(s) 2504, 4962, 5289, 5412, 5975, 8092, 8487
ZraI GACGTC 1 cut(s) 205
Zsp2I ATGCAT 4 cut(s) 610, 3368, 5464, 7083
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.