Rh4CG198100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000582
Physical Location & Seq
Forward (+)
42244395 .. 42265578
21184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG198100.1

Sequence Viewer

Length: 8538 bp
ATGGCCGGTTACCCTCATCACTTCCGCCCCTCCAGTGGGGACTGGAACCGGGCACACCCACCTCCTCACCTCTCCCACCCACAATTTCCTTACCCCAATTTTCCTCCCCAAAACCCCACCAATTTAAACATCTATCCCCCTCAACCTTCCGCCTTTCCACCACCGCAACCCCAACCGCCGCAACCGTCAAACCCTAATTTCCCCCTCCAACACCCTATCGATGTCAATATCTTTCCCGCCAACCACTATGGACACTCCTCATTTTCCAATTACTACCCAACCCCAACCTCTAATTTCTCTCTGCAAAACCCTAACCCCACTCCCCACTCCACTCCACCCTTCCCCCCTCAGAGCTTCTCCCGTAACCCTAACGAGGCGCCCGACCCGCCGAACCTCCCGAATTCGGCTAGGCATTTGCCTGAGGACCCGAGAGAGGTGCTCGAGAAGATCGACCGTGCGGTGGAGAAGCTTCGCGGCGAGCTTGTCGCCGCCGGAAAGAACGTCTCGGCCTGGAAGGTCTTACAGTCTGCTCTTCTGATGCTCAATGTTGATGCCGAGACTTGTTTGGGGCTCAAAGTTGAGCAAGTGCCGTCTCTTCACCGCCTCATGGTCACTGAAGGAAGGATAAATGCATTTATTCATTGCTTTGTTGGAGTTCGAACAATTACATCTTTGTATGATTTGGAAGTTGCAATCTGCAAGAATGAGGATATTGAGCAGTTTGAAGAGCTTGGATTGGGTCCTTTGTTGCAACACCCACTAGTTTTGCAATATTTCTCTGTGGATTCTGAAACAACTGAAGTCTTTAAGATATCTAGTGAGGAGATACTACATTTACTCAGTAGGTACCTAAAGAAGCCCAAAGTTAAGGAAAATTCTGTTGAGGGGTTCTTGGACTTCATTGTTACGAAGCGACCTGTTGCAGGCAAGGAAAAGCTTGGAATTCGAATATTTAGTTTGGGGGTGCATGCTTCTGCTATGCGTGAAGCCAAGGCTTCAGAACGTGCAGCTTTATGGAAATCATTACAGGAATTAAAGCAAAAGTCTCCCAAAATATCTAGGAGGAAGGCACCAATTTTCTCCTCGCTGAAAAAGCGGCTAGATAAACATTTGCACGCCATTTCGCAGCAATCTGGATTGTGTTCTGTTGTGAATGGAAATGAAGATACACTTGTTTCTTCAAGATCAAAGGATGAAGGTATTAATGATTATTTACATGATGACAAAGGTAATGACCATGGTACTGGTGGTCATATTGACTCACTAAAATCCCTGAAAAGTTCTGACAGAAAGGGTAAGTGTTCTTACTTGTCTGAAGTGGAGGAGAGGTCTTCGCTCATGTCAAACCACCCTTCTCCAAGCCAAAAGCATAATGAGAGTAATGGGTCAGTTAAAAAGAAAAGAAAATACGAAAATCTAAGCTGCCCTATCTCTGTTCCCTCAAAGTTGCGCAAGAGAGAGAAGGTAGAGCAAGATGCTCTTCCTACAGAAAGTGACAGTGAAACTAAGGAGATCAGCGAGATGCTTAAACTTGATCTTTCAATTGCCAATAATCTTTTGAGGATGTTCATTTCAACTTGGAAGGAGGCATGTAGGGAGCAGCCTGTGGCTGAGGTACTTTGGGCCATGCTTCGCTCTTGTAATACAAAATATAGGAGGACAAAGAGAATCATGGCAATGTTTTCGACATACCCTTTGGTTGGATTACTCAATGTTGCCGTCTCATCTATCAAATGTGGAATGTGGGATAATATGTTTGATACGTCCCAAACCATTAGTCCACGTGAGTTGGCTAACACTGTAACTGATAATTATCCTGAACATGTCGAACAAAGTATAAAGGATGCACCACCAGTCAGCACTGAACATGCTACCGAACATGGACAAACCTCTTGCTGCCTGAAGCCAAATCATCAGGATCGTCCACGTCGGTGGAGGAAGATCCCAAGGAGTCGTAAGAAGTTGGAGCCTGAAAACGGACACATCTGCTACCTTTGTCATCAAGAGGGACATGTCAAGAGAAGATGCCCTCTGTGGCAGCAAACTAAAAAATCATCATATGAACCACAGAGTCCTCAACAATTGGCTCAGTATTCTATTTCCGGAGAAGAGGTGGAGGAGAAAGTCAGTGCTGTGGTGGATGACTCCACAGGTGTTTCAGTTAAAGAGATAATCCGTAAAGTTGCTACATATTTTGAGACTGATCAAGGAATGTCTAGCAATGGTAAATCACTTCCGGAGAAGATATTTATTTACTTCAGAAAGCTTTGGAATTGTGAGCTCTGGTTGACTGAAGAATTTTCTGTCAAGGAATTTAGATCCCTTGGTTATGGGGAATTTATGATGTTTTTAGAAAAGTATGCCCGTCTTCTGCCACCGGAGATGTGCAAGTTCTTGAAAGATGACAGCAGTGGAAAGTTTCCTTTGGAGGTTTGCATGCTTCCGCATTATTTAGTTGTTTTGGTATCTCAAGCTTTAAACAATTTATGGGAGGACCAAAAGATTACCAAACTGAACATTTCTTCTCTGCTTGGGAAGCAGTTCCCGGCCCTTAGTTTCCATACCATTGAAAATGGTTCAGTAGAAGACTTTAAAAGTATAGTAGGAAAGCATAAAGACACTGCAATTTCCAAATGTGTACTATTTTCAATGACAATATGCGGAACTAGTTACACTATAGAATCATTGGAAAACTGTAGTAAGAATACTGTATTGAAAAGCAGTTTGGTGAGTGTTAACAGTGGCCAGAAAATAAGCAATCAATCTGTTGCATCCAAGGAGGCAATTGCAGTCTTACTTAGGGCACCCATGATGTCAGATTTGAATTTATGGTCACATTGGGACCTCTTATTTGCTCCCTCTCTTGGCCCTCTTGTACCGTGGTTATTGAATGAAGTCAACACAGATGAATTACTCTGTTTGGTAACCAAAGATGGCAAAGTTATTCGGTTAGATCATTCAGCTACTGTAGATTCATTCTCGAAAGCTGCTCTTCAAGGATCCTCTTTTCAAACAGCAGTGAAAATGTTATCTCTCTTTTCACTGGTTGGGGGAAAAAAACATGTCCCCGTGTCCCTTTTGAAATTCCATGTACAGCGTGCATTTGAAGTTATTTTCAAGACCTATCTAGATGGTATGGAAGTATATGACAAGAAGAGTTCTCTTAATCAAGGAACAGTTTTGTGTGGACAGAAAATGGTTGTTGAAATTGCTGCTGGTAAATGCAGTAACTTACACAGAGCTGTAACGAAGACGAAAATTGCTGAGTCTGTTATATCACATTTTTTTCTTGATTGCCTGGGGTATCTACCTGCAGAGTTTCGCAGTTTTGCTGCTGATGTGTTACTTTCTGGGATGCGGTCTGTTTTTAAGCATGCAGCTTCAGCCATTTTGGATGAATGCATCCAAATAGAGCAGCGTCTCATACTTCATGAAGTTGGCTTATCTCTTGGTATAGTGGAGTGGATTAGTGATTACCATGTATTTAGTTCCTTGGATTCTACTGATTCGTTCATGTCTGAGGTTTCTGGTCTCAATGCTGATAGAGATCAAATGGGGTCAGACTCAAAATATATGCAAAATGTGCCAAAAAAGTTGGCTGCTTCTGAACAGAGTATGGCTGCATCTGTTAGGGCAGTTGAGCATAAAGGAGGATGTGCTGATGTTAGCCGGATGGTTGATGGTGCAGGAGTTTCTGATGCTGGGATTGGCATTGGCATTGGTTACAGACAACATCCTACTAATATTAATGAACATGAAGATGCTCTCCAGGTTATTGAGTCAATCAGGAGAGATGAATTCGGTTTGGATTCAAGCCCATTGACCTTTGAAAGTATCGTCTTAAAGAAACAGCATGCTCGCTTAGGGAGAGCTCTGCACTGTCTTTCACAGGAATTATATTCTCAAGATTCTCATTTTCTTCTTGAGCTGGTTCAAAATGCTGATGATAATACTTATCCAACAAATATAGAACCAACTCTAGCATTCATTCTTCAAGAATCAGGTATTGTTGTTTTGAATAATGAGCAAGGCTTCTCTGCCCAGAACATTAGAGCACTTTGTGATGTTGGAAATTCAACCAAGAAAGGATCCAGTGCCGGATATATAGGGCAAAAGGGCATCGGTTTCAAATCAGTATTTCGTGTCACAGATGCTCCAGAAATTCATTCTAATGGATTTCATATCAAGTTTGATACAAGTGAGGGTCAGATTGGTTTAATTCTGCCCACAGTTGTACCTCCTTGCAATCTTGAGTTGTTTAGACAGCTGACATCTAGTGACATTGATAAACCAGATTGTTACTGCTGGAAAACTTGTATTGTTCTTCCTTTCAGATCGAAAGTATCAGATGGAACTGTCTTGAACCACATAATGAATATGTTTTCAGATCTTCATCCATCTTTACTACTCTTTCTTCACCGCCTCAAGTGTATCCGGTTTAGAAACCTAATCGATGATTCACTTACTGTCATGAGAAAAGAAATTGTAGGAGACGGTATTGTCAAGGTTTCACATGGTAATACGAAGATGACATGGTTTGTAGTATCTCAAAAATTGCACTCAGATAATCTTCGTAGTGATGTGCAAACAACAGAAATCTCAATTGCTTTTACATTGAAGGAATCGGATAAGGGCATTTATCGTCCAGATATAGGCCAACAGCCTGTTTTTGCATTTCTTCCTCTTAGAACATACGGACTGAAATTTATTGTTCAGGGTGATTTTGTTCTTCCTTCATCCAGAGAGGAAGTGGATGGAGATAGTCCCTGGAACCAATGGCTATTGTCAGAATTTCCTGGTTTATTTGTCGATGCAGAGAAATCATTTTGTTCTCTTCCATGTTTCAAAGAGAATCCTGGGACTGCTGTGGCAGCTTACATGTCCTTTGTTCCACTTGTTGGGGAAGTGCATGGTTTCTTTTCTTCTCTTCCTCGATTAATTATTTCTAAATTACGGATGTCAAATTGCTTACTTCAGGAAGGAGAAAAGAAAGAATGGGTTCCTCCTTGCAAGGTCCTAAGAAATTGGAATAAACAGGCTCGTTCACTTCTCCCTGATGGTCTACTGCATGAGCATCTTGGCCTTGGATTCTTGGATAAAGATATAGTTCTGCCTGATCCACTTGCAAGAGTTCTAGGTATTGCAGAGTATGGGCCCACAGTTCTGCTTCAGGTAATGGCTTCTTTATGTGGTAAGCAGGATGGCCTCAAATCAATGGGAATGGGTTGGATGGCCTCTTTGCTTAGTGAACTTTATGCAATGTCATTCAAATCTTCTGTTGAAACTTCCTTTGATTCTGGAATAGAAATGGGATTCCTAGAAAAACTTCAAAAAATTCCATTCATACCTCTTTCAGATGGTACATATGGTGCAGTCGTTGAAGGCCCAATTTGGCTACAGTTTGATGCCGTAGGGACTGGTTTTGGGGATCATCATGGACTTGAATCTTTTCCAAAGTTATATGCTAAACTTCGGATTGTAAGTCCGGAGCTCTATGCATTGTCTGCTGATATGCCATCCATGGATGTGACGCCAATTGACAAAGTCATTAGTATGCTCCATAGAATTGGTGTCCAACGGTTGTCCGCACACGAGATTCTCAAGGCTCACATCTTGCCAGCTATATCTGATGATAGAATTACAGTTAGGGATGAAGATTTGATGACTGATTATATCTGCTTCGCAATGGTTCACTTACAGTCGAGCTGCTCTGATTGTCATGCTGAAAGGGAATACATAATATCAGAACTACAAAATAAAGCTTATATTCTAACTAATAATGGCTTTAAACGACCTGCTGAGGCATCAATTCATTTCAGTAAAGAATTTGGAAATCCAGTGGACATAAGTAGGTTGATTGATAGGGTAAATCTGACATGGGATGAGGTTGATATCTCCTATTTGAAGCATCCAGTTGCTAAATCACTTCCAAATGGACTGATGAAGTGGAGAGATTTTTTCCAGAAAATTGGCATTGTGGATTTTGTGAAGGTAGTTCAAGTTGAGAAGGGTTTCACTGAGTTGTCTGAGGCTCTATTTAATAATCTAACTTGGGACCAGCACACTATTTCCCATGGGTTGAATGCCACAGATTGGGAATCACCTGAGTTAGTCCATTTATTATCCCTATTGTCCAGAGATGGCAACAGAAAAGGTTGTGAGTATCTCTTAGAGGTTCTCGATAAATTATGGGATGATTGCTATAGTGACAGAGCTACAGGGTACTGCTCTTCTAAGTCTGTTGCAGATAGAAAGCCCTTCAAATCTTCATTTATGAGCACCATCTGCGATGTGCAATGGGTAGTATCAGGAATGGATGATAAACTTCACTATCCCAAGGATCTATATCACGACAGTGTTGCAGTGCGGTCAATTCTTGGTGGATCTGCCCCTTTTTTTGTTCCTAAGGCTACCAGTGAAAAATTTGTATTTGATATTGGTTTTAAGACAAGAGTCTCTCTTCACGATGCTCTGGAGATGTTGAAACTATGGAGATGTGAGAATCCGTTTAGGGCCAGCCTAGCACAAATGTCCAAATTTTACTCATTAATCTGGAATGAAATGGCTTCTTCAAAGAAGACAACTGCAGAGGAATTCTGTTTGGAACCTTTTGTATTTGTTCCATATGAATCTAGCTTCCGGCATGAGGATGTGGTGTCTGGTACATTTCTGTCCCTTGAAGAAGTATACTGGGATGATTCTACTTTCTTTGTGGACCAAATCAAGGAGATCCATCATCAGTGCAACTCAACAGTTGGTAATCGCCCCATAAACAGGATTCTGAGTAATTTCTACCCGGCCCTTCATGACTTCTTTGTTGATATATGTGGAGTACATGAGATCCCTCCTCTTCGTAGCTACCTTCAGATTTTGCTACAGTTTTCAAATGCTGTTTTGCCTTCACAAGCAGCTAATGCTGTTTTTCAAGTTTTTCAGAAGTGGGCTGATGGGCTCCAATCAGGAATGAGTGCTGAGGATATTGTATACTTGAAAGATTCGCTTACAAGGATGGAATGTACTGTGCTTCCTACTGTACAGGATAAGTGGGTATCTCTGCATCCTTCCTATGGTCTCCTGTGCTGGTGTGATGATAAGACGTTGAAGAAGCAGTTTATGCATATGGATGGACTTGATTTTCTTTACCCTGGTGGACTAAGTAATGATGATGAAGAGATCATAAGTACAAAAATGTCCGTCCTCATGCGAACCTTAGGGATTTCTGCACTTTCAGAGGTTGTGACTCGTGAGGCGATGTTTAATGGTCCGACAGATTCTAGCTTTAAAGCTGCATTGCTGGATTGGGCTCTGCCATATGCGCAGCGCTACTTACATAGTTTACATCCTGATAAATATTCTCAACTCAAGCAGTCTGGATTCGATATACTAAATCGTTTGCGAGTAGTAGAAGTTCAAAAGCTGTCCTACCGCAATGTTATAAAGATTGCTGGAAGTGAATCCAAGAAGCAAATCGAATGTAGTTGTGTTCTGCAGGATCACAATCTGTATACAACCCAGGAATCAGATTCTCACGCATTATTTATGGAGCTTTCTCGTTTGTTTTTTGATGGAAAACCAGAATTACACTTGGCAAATTTCCTTCATATGATCACAACAATGGCTGAATCAGGTTCAACTGAGGAGCAGATAGACTTTTTCATCTTCAATAGCCAAAAGGTGCCAAAGCTTCCTGATGGAGAATCTGTTTGGTCCCTGTCACATGTGCATAATGATAGGTTACCCCAGCCAAGTGACTGGCGCTTTGTTGGTTGGAAAGCCCCACTAAGCTTTGGTTATGCAAATCTTTTCAAGGCTCAGGCACAATTTGCACAGCTTACCAGTGTCTCACAAATTGAAATGGATAATGATTCTGAAACCCATGTCAGACAAACAGTTGAATCAACTCCCATTTCAGTTGACATTAAATGGACAATTGGTGAGGGTACAGCAACAACATCTGCACCTTTAGTGCTGCCAAACTCCAATGATTTGCAGGAACACTTTGATGATGAGACTGATATGGATACTGATTTCAATCCTAATAATCTAGATTTTGTTGTTGACCCTCGCGTTTTGGGTTCATCTGATTGTAGCAAGGTAGACCATCCTAGATATGGCTCTAGTGGAAGAGATTCAATGCGTGGAAGAGATGCAATGCTTACCGGGAGGTTAGGTGAGGTTGTTGCTTTTAAATACTTAATTGCAAAAGCTGGCAAGTCAGTTGTGAGGTGGGTTAATGAAAGAATTGAAACTGGGCTACCCTATGACATAGTTGTAGGTGAGAACGAAGATAGTCTAGAGTTCATTGAGGTTAAGGCCACCCAACAACAAAAAAAGGATTGGTTCCACATATCAATGAGGGAGTGGCAATTTGCAGCGGAAAAAGGCGAAGCCTTCAGCATTTTGCACGTCCTCTTATTGGGTAATAATGCTGCAAGAGTCTCAGTTTACAAGAATCCTGTAAAATTGTGTCATCTGGGCAAGCTACAGTTGCATCTTTCGATGCCTAGGCAGGAGAAGGAATTATTTCTTGTGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3883

Protein Analysis

2845

Amino Acids

320.0

Weight (kDa)

6.16

Isoelectric Point (pI)

44.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SACS PF25794 1304 - 1404 2.5e-08 Sacsin domain
NOV_C PF13020 2724 - 2810 1.6e-19 Protein NO VEIN, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08300 AT1G08300 AT1G08300 AT4G13750
fragaria_vesca FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_4g13620 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660
malus_domestica MD04G1012800.v1.1 MD04G1012900.v1.1 MD04G1013100.v1.1 MD04G1013300.v1.1
prunus_persica Prupe.1G159000_v2.0.a1 Prupe.1G159100_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G358100_v2.0.a1
pyrus_communis pycom04g01020 pycom04g01030
rosa_chinensis RchiOBHm_Chr4g0414341 RchiOBHm_Chr4g0414351 RchiOBHm_Chr6g0275261 RchiOBHm_Chr7g0213881 RchiOBHm_Chr7g0213891
rosa_laevigata RLG00000008153 RLG00000008155 RLG00000013477
rosa_multiflora Rmu_co8510163.1_g000001 Rmu_sc0004087.1_g000027 Rmu_sc0005196.1_g000014 Rmu_sc0005558.1_g000005 Rmu_sc0005558.1_g000006 Rmu_sc0008100.1_g000005 Rmu_sc0008560.1_g000005
rosa_roxburghii Rroxscaffold_5G00358210 Rroxscaffold_5G00358220 Rroxscaffold_7G00187920 Rroxscaffold_7G00187930 Rroxscaffold_7G00193450
rosa_rugosa Rorug04G0127100 Rorug04G0127200 Rorug04G0127300 Rorug04G0127400 Rorug06G0090600
rosa_samantha Rh4AG185200 Rh4AG185300 Rh4AG185500 Rh4BG184700 Rh4BG184800 Rh4CG198000 Rh4CG198100 Rh4DG182400 Rh4DG182600 Rh6AG204100 Rh6BG207000 Rh6CG209600 Rh6DG200000 Rh7AG277400 Rh7CG296400 Rh7CG296500
rosa_wichuraiana Rw4G015850 Rw4G015860 Rw6G017730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 7436
AasI GACNNNNNNGTC 1 cut(s) 4499
Acc16I TGCGCA 2 cut(s) 1451, 7317
Acc36I ACCTGC 2 cut(s) 3319, 5803
Acc65I GGTACC 1 cut(s) 846
AccB1I GGYRCC 5 cut(s) 376, 846, 1069, 2803, 7675
AccB7I CCANNNNNTGG 2 cut(s) 4898, 6093
AccI GTMKAC 5 cut(s) 5062, 6687, 6984, 7505, 8097
AccII CGCG 2 cut(s) 474, 8067
AccIII TCCGGA 3 cut(s) 2102, 2236, 5485
AcoI YGGCCR 2 cut(s) 3, 2743
AcvI CACGTG 1 cut(s) 1784
AcyI GRCGYC 2 cut(s) 377, 5531
AdeI CACNNNGTG 1 cut(s) 4061
AfeI AGCGCT 1 cut(s) 7322
AflIII ACRYGT 5 cut(s) 1822, 2011, 3061, 4878, 7717
AhlI ACTAGT 2 cut(s) 760, 2666
AjiI CACGTC 2 cut(s) 1928, 8407
AjnI CCWGG 8 cut(s) 509, 3297, 3768, 4766, 4795, 4855, 7144, 7512
AjuI GAANNNNNNNTTGG 2 cut(s) 2708, 2740
AleI CACNNNNGTG 2 cut(s) 1930, 6354
Alw21I GWGCWC 6 cut(s) 441, 2283, 3874, 4057, 5493, 6281
AlwNI CAGNNNCTG 1 cut(s) 2966
Ama87I CYCGRG 2 cut(s) 427, 440
Aor13HI TCCGGA 3 cut(s) 2102, 2236, 5485
Aor51HI AGCGCT 1 cut(s) 7322
ApaI GGGCCC 1 cut(s) 5157
ArsI GACNNNNNNTTYG 8 cut(s) 1678, 1710, 1762, 1794, 2834, 2866, 7742, 7774
AseI ATTAAT 4 cut(s) 1203, 3747, 4937, 6548
Asp700I GAANNNNTTC 7 cut(s) 2540, 4998, 5325, 5448, 6011, 8128, 8523
Asp718I GGTACC 1 cut(s) 846
AspA2I CCTAGG 1 cut(s) 8504
AspLEI GCGC 5 cut(s) 379, 1452, 7318, 7323, 7758
AsuC2I CCSGG 4 cut(s) 50, 2546, 6797, 8161
AsuHPI GGTGA 9 cut(s) 59, 590, 2740, 4409, 4730, 6093, 7946, 8183, 8288
AsuII TTCGAA 2 cut(s) 658, 946
AvaI CYCGRG 2 cut(s) 427, 440
AvaII GGWCC 9 cut(s) 424, 740, 2494, 2842, 5014, 6055, 6715, 7262, 7707
AvrII CCTAGG 1 cut(s) 8504
AxyI CCTNAGG 3 cut(s) 420, 6405, 7210
BaeGI GKGCMC 3 cut(s) 55, 2806, 5157
BaeI ACNNNNGTAYC 4 cut(s) 1158, 1191, 4218, 4251
BalI TGGCCA 1 cut(s) 2745
BamHI GGATCC 2 cut(s) 2999, 4088
BanI GGYRCC 5 cut(s) 376, 846, 1069, 2803, 7675
BanII GRGCYC 7 cut(s) 573, 2283, 3874, 5157, 5493, 6954, 7306
BauI CACGAG 2 cut(s) 5591, 7242
BbrPI CACGTG 1 cut(s) 1784
BbsI GAAGAC 5 cut(s) 1323, 2360, 2592, 3257, 6584
Bbv12I GWGCWC 6 cut(s) 441, 2283, 3874, 4057, 5493, 6281
BbvCI CCTCAGC 3 cut(s) 1611, 5799, 6972
BceAI ACGGC 3 cut(s) 574, 1703, 5393
BcgI CGANNNNNNTGC 6 cut(s) 418, 452, 1665, 1699, 6341, 6375
BciT130I CCWGG 8 cut(s) 511, 3299, 3770, 4768, 4797, 4857, 7146, 7514
BciVI GTATCC 2 cut(s) 4442, 8014
BclI TGATCA 2 cut(s) 2203, 7605
BcnI CCSGG 4 cut(s) 50, 2546, 6797, 8161
BcuI ACTAGT 2 cut(s) 760, 2666
BfoI RGCGCY 3 cut(s) 380, 7324, 7759
BfuAI ACCTGC 2 cut(s) 3319, 5803
BfuI GTATCC 2 cut(s) 4442, 8014
BglII AGATCT 1 cut(s) 4387
BlnI CCTAGG 1 cut(s) 8504
Bme18I GGWCC 9 cut(s) 424, 740, 2494, 2842, 5014, 6055, 6715, 7262, 7707
BmeT110I CYCGRG 2 cut(s) 427, 440
BmgBI CACGTC 2 cut(s) 1928, 8407
BmrI ACTGGG 2 cut(s) 6700, 8259
BmuI ACTGGG 2 cut(s) 6700, 8259
BoxI GACNNNNGTC 1 cut(s) 6452
BpiI GAAGAC 5 cut(s) 1323, 2360, 2592, 3257, 6584
BplI GAGNNNNNCTC 2 cut(s) 423, 455
BpmI CTGGAG 4 cut(s) 16, 3752, 4140, 6494
Bpu10I CCTNAGC 5 cut(s) 1611, 3862, 5799, 6972, 7812
Bpu14I TTCGAA 2 cut(s) 658, 946
BpuEI CTTGAG 7 cut(s) 2454, 3888, 3944, 4271, 4409, 5585, 7346
BpuMI CCSGG 4 cut(s) 50, 2546, 6797, 8161
Bsa29I ATCGAT 2 cut(s) 219, 4452
BsaAI YACGTR 1 cut(s) 1784
BsaBI GATNNNNATC 6 cut(s) 1812, 3546, 4392, 6345, 7497, 8031
BsaHI GRCGYC 2 cut(s) 377, 5531
BsaI GGTCTC 2 cut(s) 3536, 7076
BsaWI WCCGGW 5 cut(s) 2102, 2236, 2377, 4434, 5485
Bse118I RCCGGY 1 cut(s) 5
Bse21I CCTNAGG 3 cut(s) 420, 6405, 7210
Bse3DI GCAATG 9 cut(s) 640, 1683, 2227, 5265, 5691, 6302, 7289, 7435, 8157
Bse8I GATNNNNATC 6 cut(s) 1812, 3546, 4392, 6345, 7497, 8031
BseAI TCCGGA 3 cut(s) 2102, 2236, 5485
BseBI CCWGG 8 cut(s) 511, 3299, 3770, 4768, 4797, 4857, 7146, 7514
BseCI ATCGAT 2 cut(s) 219, 4452
BseJI GATNNNNATC 6 cut(s) 1812, 3546, 4392, 6345, 7497, 8031
BseMI GCAATG 9 cut(s) 640, 1683, 2227, 5265, 5691, 6302, 7289, 7435, 8157
BseRI GAGGAG 8 cut(s) 54, 247, 836, 1072, 1337, 2132, 6837, 7652
BseSI GKGCMC 3 cut(s) 55, 2806, 5157
BseYI CCCAGC 2 cut(s) 3701, 7740
BsgI GTGCAG 6 cut(s) 1026, 3705, 3860, 5391, 7206, 7941
Bsh1236I CGCG 2 cut(s) 474, 8067
Bsh1285I CGRYCG 1 cut(s) 454
BshNI GGYRCC 5 cut(s) 376, 846, 1069, 2803, 7675
BshVI ATCGAT 2 cut(s) 219, 4452
BsiEI CGRYCG 1 cut(s) 454
BsiHKAI GWGCWC 6 cut(s) 441, 2283, 3874, 4057, 5493, 6281
BsiHKCI CYCGRG 2 cut(s) 427, 440
BsmBI CGTCTC 5 cut(s) 508, 597, 1726, 3425, 4485
BsmI GAATGC 3 cut(s) 3404, 3983, 6088
Bso31I GGTCTC 2 cut(s) 3536, 7076
BsoBI CYCGRG 2 cut(s) 427, 440
Bsp119I TTCGAA 2 cut(s) 658, 946
Bsp120I GGGCCC 1 cut(s) 5153
Bsp13I TCCGGA 3 cut(s) 2102, 2236, 5485
Bsp1407I TGTACA 2 cut(s) 3091, 7033
Bsp19I CCATGG 3 cut(s) 1237, 5520, 6073
BspDI ATCGAT 2 cut(s) 219, 4452
BspEI TCCGGA 3 cut(s) 2102, 2236, 5485
BspFNI CGCG 2 cut(s) 474, 8067
BspHI TCATGA 3 cut(s) 3430, 4470, 6805
BspMAI CTGCAG 3 cut(s) 3316, 6589, 7491
BspMI ACCTGC 2 cut(s) 3319, 5803
BspQI GCTCTTC 5 cut(s) 537, 720, 1485, 2997, 6235
BspT104I TTCGAA 2 cut(s) 658, 946
BspT107I GGYRCC 5 cut(s) 376, 846, 1069, 2803, 7675
BspTNI GGTCTC 2 cut(s) 3536, 7076
BsrDI GCAATG 9 cut(s) 640, 1683, 2227, 5265, 5691, 6302, 7289, 7435, 8157
BsrFI RCCGGY 1 cut(s) 5
BsrGI TGTACA 2 cut(s) 3091, 7033
BssAI RCCGGY 1 cut(s) 5
BssNAI GTATAC 3 cut(s) 6688, 6985, 7506
BssNI GRCGYC 2 cut(s) 377, 5531
BssSI CACGAG 2 cut(s) 5591, 7242
Bst1107I GTATAC 3 cut(s) 6688, 6985, 7506
Bst2BI CACGAG 2 cut(s) 5591, 7242
Bst2UI CCWGG 8 cut(s) 511, 3299, 3770, 4768, 4797, 4857, 7146, 7514
BstACI GRCGYC 2 cut(s) 377, 5531
BstAPI GCANNNNNTGC 6 cut(s) 3583, 5504, 6285, 6914, 7114, 7823
BstAUI TGTACA 2 cut(s) 3091, 7033
BstBAI YACGTR 1 cut(s) 1784
BstBI TTCGAA 2 cut(s) 658, 946
BstDSI CCRYGG 4 cut(s) 1237, 2879, 5520, 6073
BstEII GGTNACC 3 cut(s) 8, 2923, 7734
BstENI CCTNNNNNAGG 1 cut(s) 921
BstFNI CGCG 2 cut(s) 474, 8067
BstH2I RGCGCY 3 cut(s) 380, 7324, 7759
BstHHI GCGC 5 cut(s) 379, 1452, 7318, 7323, 7758
BstMCI CGRYCG 1 cut(s) 454
BstNI CCWGG 8 cut(s) 511, 3299, 3770, 4768, 4797, 4857, 7146, 7514
BstPAI GACNNNNGTC 1 cut(s) 6452
BstPI GGTNACC 3 cut(s) 8, 2923, 7734
BstSLI GKGCMC 3 cut(s) 55, 2806, 5157
BstUI CGCG 2 cut(s) 474, 8067
BstV2I GAAGAC 5 cut(s) 1323, 2360, 2592, 3257, 6584
BstX2I RGATCY 9 cut(s) 1941, 2318, 2999, 4088, 4387, 6340, 6383, 6729, 6840
BstXI CCANNNNNNTGG 5 cut(s) 1244, 1932, 5567, 5969, 7752
BstYI RGATCY 9 cut(s) 1941, 2318, 2999, 4088, 4387, 6340, 6383, 6729, 6840
BstZ17I GTATAC 3 cut(s) 6688, 6985, 7506
Bsu15I ATCGAT 2 cut(s) 219, 4452
Bsu36I CCTNAGG 3 cut(s) 420, 6405, 7210
BsuI GTATCC 2 cut(s) 4442, 8014
BsuTUI ATCGAT 2 cut(s) 219, 4452
BtgI CCRYGG 4 cut(s) 1237, 2879, 5520, 6073
BtgZI GCGATG 2 cut(s) 6303, 7265
BtrI CACGTC 2 cut(s) 1928, 8407
BtsI GCAGTG 4 cut(s) 2416, 2619, 3024, 6369
BveI ACCTGC 2 cut(s) 3319, 5803
CaiI CAGNNNCTG 1 cut(s) 2966
CciI TCATGA 3 cut(s) 3430, 4470, 6805
CfoI GCGC 5 cut(s) 379, 1452, 7318, 7323, 7758
Cfr10I RCCGGY 1 cut(s) 5
ClaI ATCGAT 2 cut(s) 219, 4452
CseI GACGC 2 cut(s) 3407, 5539
CspCI CAANNNNNGTGG 4 cut(s) 747, 782, 1770, 1805
DinI GGCGCC 1 cut(s) 378
DraI TTTAAA 6 cut(s) 126, 2478, 2593, 5788, 7282, 8188
DraIII CACNNNGTG 1 cut(s) 4061
DrdI GACNNNNNNGTC 1 cut(s) 4499
DseDI GACNNNNNNGTC 1 cut(s) 4499
EaeI YGGCCR 2 cut(s) 3, 2743
EciI GGCGGA 2 cut(s) 14, 139
Ecl136II GAGCTC 3 cut(s) 2281, 3872, 5491
Eco24I GRGCYC 7 cut(s) 573, 2283, 3874, 5157, 5493, 6954, 7306
Eco31I GGTCTC 2 cut(s) 3536, 7076
Eco32I GATATC 2 cut(s) 813, 5893
Eco47I GGWCC 9 cut(s) 424, 740, 2494, 2842, 5014, 6055, 6715, 7262, 7707
Eco47III AGCGCT 1 cut(s) 7322
Eco53kI GAGCTC 3 cut(s) 2281, 3872, 5491
Eco72I CACGTG 1 cut(s) 1784
Eco81I CCTNAGG 3 cut(s) 420, 6405, 7210
Eco88I CYCGRG 2 cut(s) 427, 440
Eco91I GGTNACC 3 cut(s) 8, 2923, 7734
EcoICRI GAGCTC 3 cut(s) 2281, 3872, 5491
EcoNI CCTNNNNNAGG 1 cut(s) 921
EcoO109I RGGNCCY 4 cut(s) 424, 740, 2842, 5014
EcoO65I GGTNACC 3 cut(s) 8, 2923, 7734
EcoRI GAATTC 4 cut(s) 400, 942, 3797, 6593
EcoRII CCWGG 8 cut(s) 509, 3297, 3768, 4766, 4795, 4855, 7144, 7512
EcoRV GATATC 2 cut(s) 813, 5893
EcoT22I ATGCAT 4 cut(s) 634, 3404, 5500, 7119
EcoT38I GRGCYC 7 cut(s) 573, 2283, 3874, 5157, 5493, 6954, 7306
EgeI GGCGCC 1 cut(s) 378
EheI GGCGCC 1 cut(s) 378
Esp3I CGTCTC 5 cut(s) 508, 597, 1726, 3425, 4485
FalI AAGNNNNNCTT 8 cut(s) 1155, 1187, 1464, 1496, 2976, 3008, 6984, 7016
FauI CCCGC 2 cut(s) 244, 393
FauNDI CATATG 6 cut(s) 2059, 5365, 6625, 7119, 7312, 7602
FbaI TGATCA 2 cut(s) 2203, 7605
FblI GTMKAC 5 cut(s) 5062, 6687, 6984, 7505, 8097
FriOI GRGCYC 7 cut(s) 573, 2283, 3874, 5157, 5493, 6954, 7306
FspI TGCGCA 2 cut(s) 1451, 7317
GlaI GCGC 5 cut(s) 378, 1451, 7317, 7322, 7757
GsaI CCCAGC 2 cut(s) 3705, 7744
GsuI CTGGAG 4 cut(s) 16, 3752, 4140, 6494
HaeII RGCGCY 3 cut(s) 380, 7324, 7759
HgaI GACGC 2 cut(s) 3407, 5539
HhaI GCGC 5 cut(s) 379, 1452, 7318, 7323, 7758
Hin1I GRCGYC 2 cut(s) 377, 5531
Hin6I GCGC 5 cut(s) 377, 1450, 7316, 7321, 7756
HinP1I GCGC 5 cut(s) 377, 1450, 7316, 7321, 7756
HincII GTYRAC 5 cut(s) 2289, 2737, 2899, 7915, 8059
HindII GTYRAC 5 cut(s) 2289, 2737, 2899, 7915, 8059
HindIII AAGCTT 7 cut(s) 467, 935, 2264, 2472, 5760, 7682, 7783
HpaI GTTAAC 1 cut(s) 2737
HphI GGTGA 9 cut(s) 59, 590, 2740, 4409, 4730, 6093, 7946, 8183, 8288
Hpy99I CGWCG 1 cut(s) 1932
HpyCH4IV ACGT 7 cut(s) 501, 1003, 1763, 1783, 1927, 7097, 8406
HpySE526I ACGT 7 cut(s) 501, 1003, 1763, 1783, 1927, 7097, 8406
Hsp92I GRCGYC 2 cut(s) 377, 5531
HspAI GCGC 5 cut(s) 377, 1450, 7316, 7321, 7756
KasI GGCGCC 1 cut(s) 376
Kpn2I TCCGGA 3 cut(s) 2102, 2236, 5485
KpnI GGTACC 1 cut(s) 850
Ksp22I TGATCA 2 cut(s) 2203, 7605
KspAI GTTAAC 1 cut(s) 2737
LguI GCTCTTC 5 cut(s) 537, 720, 1485, 2997, 6235
LmnI GCTCC 9 cut(s) 1597, 1966, 2860, 4159, 5488, 5562, 6957, 7543, 7639
MaeII ACGT 7 cut(s) 501, 1003, 1763, 1783, 1927, 7097, 8406
MfeI CAATTG 6 cut(s) 1542, 2081, 2784, 4602, 5535, 7929
MflI RGATCY 9 cut(s) 1941, 2318, 2999, 4088, 4387, 6340, 6383, 6729, 6840
MlsI TGGCCA 1 cut(s) 2745
MluNI TGGCCA 1 cut(s) 2745
Mly113I GGCGCC 1 cut(s) 377
Mox20I TGGCCA 1 cut(s) 2745
Mph1103I ATGCAT 4 cut(s) 634, 3404, 5500, 7119
MroI TCCGGA 3 cut(s) 2102, 2236, 5485
MroXI GAANNNNTTC 7 cut(s) 2540, 4998, 5325, 5448, 6011, 8128, 8523
MscI TGGCCA 1 cut(s) 2745
Msp20I TGGCCA 1 cut(s) 2745
MspA1I CMGCKG 2 cut(s) 4267, 8375
MteI GCGCNGCGC 1 cut(s) 7319
MunI CAATTG 6 cut(s) 1542, 2081, 2784, 4602, 5535, 7929
Mva1269I GAATGC 3 cut(s) 3404, 3983, 6088
MvaI CCWGG 8 cut(s) 511, 3299, 3770, 4768, 4797, 4857, 7146, 7514
MvnI CGCG 2 cut(s) 474, 8067
NarI GGCGCC 1 cut(s) 377
NciI CCSGG 4 cut(s) 50, 2546, 6797, 8161
NcoI CCATGG 3 cut(s) 1237, 5520, 6073
NdeI CATATG 6 cut(s) 2059, 5365, 6625, 7119, 7312, 7602
NmeAIII GCCGAG 2 cut(s) 485, 580
NsbI TGCGCA 2 cut(s) 1451, 7317
NsiI ATGCAT 4 cut(s) 634, 3404, 5500, 7119
NspV TTCGAA 2 cut(s) 658, 946
OliI CACNNNNGTG 2 cut(s) 1930, 6354
PaeI GCATGC 4 cut(s) 971, 2440, 3377, 3857
PaeR7I CTCGAG 1 cut(s) 440
PagI TCATGA 3 cut(s) 3430, 4470, 6805
PciI ACATGT 5 cut(s) 1822, 2011, 3061, 4878, 7717
PciSI GCTCTTC 5 cut(s) 537, 720, 1485, 2997, 6235
PcsI WCGNNNNNNNCGW 2 cut(s) 378, 447
PctI GAATGC 3 cut(s) 3404, 3983, 6088
PdmI GAANNNNTTC 7 cut(s) 2540, 4998, 5325, 5448, 6011, 8128, 8523
PflFI GACNNNGTC 1 cut(s) 5543
PflMI CCANNNNNTGG 2 cut(s) 4898, 6093
PluTI GGCGCC 1 cut(s) 380
PmaCI CACGTG 1 cut(s) 1784
PmlI CACGTG 1 cut(s) 1784
Ppu21I YACGTR 1 cut(s) 1784
PpuMI RGGWCCY 4 cut(s) 424, 740, 2842, 5014
PscI ACATGT 5 cut(s) 1822, 2011, 3061, 4878, 7717
PshAI GACNNNNGTC 1 cut(s) 6452
PshBI ATTAAT 4 cut(s) 1203, 3747, 4937, 6548
PsiI TTATAA 1 cut(s) 7436
Psp124BI GAGCTC 3 cut(s) 2283, 3874, 5493
Psp5II RGGWCCY 4 cut(s) 424, 740, 2842, 5014
Psp6I CCWGG 8 cut(s) 509, 3297, 3768, 4766, 4795, 4855, 7144, 7512
PspCI CACGTG 1 cut(s) 1784
PspEI GGTNACC 3 cut(s) 8, 2923, 7734
PspFI CCCAGC 2 cut(s) 3701, 7740
PspGI CCWGG 8 cut(s) 509, 3297, 3768, 4766, 4795, 4855, 7144, 7512
PspOMI GGGCCC 1 cut(s) 5153
PspPPI RGGWCCY 4 cut(s) 424, 740, 2842, 5014
PsrI GAACNNNNNNTAC 2 cut(s) 7392, 7424
PstI CTGCAG 3 cut(s) 3316, 6589, 7491
PstNI CAGNNNCTG 1 cut(s) 2966
PsuI RGATCY 9 cut(s) 1941, 2318, 2999, 4088, 4387, 6340, 6383, 6729, 6840
PsyI GACNNNGTC 1 cut(s) 5543
PvuII CAGCTG 1 cut(s) 4267
SacI GAGCTC 3 cut(s) 2283, 3874, 5493
SapI GCTCTTC 5 cut(s) 537, 720, 1485, 2997, 6235
SfoI GGCGCC 1 cut(s) 378
Sfr274I CTCGAG 1 cut(s) 440
SfuI TTCGAA 2 cut(s) 658, 946
SinI GGWCC 9 cut(s) 424, 740, 2494, 2842, 5014, 6055, 6715, 7262, 7707
SlaI CTCGAG 1 cut(s) 440
SmlI CTYRAG 8 cut(s) 440, 2469, 3903, 3923, 4250, 4424, 5600, 7361
SmoI CTYRAG 8 cut(s) 440, 2469, 3903, 3923, 4250, 4424, 5600, 7361
SpeI ACTAGT 2 cut(s) 760, 2666
SphI GCATGC 4 cut(s) 971, 2440, 3377, 3857
SspDI GGCGCC 1 cut(s) 376
SspI AATATT 4 cut(s) 773, 951, 3745, 7352
SstI GAGCTC 3 cut(s) 2283, 3874, 5493
TaiI ACGT 7 cut(s) 504, 1006, 1766, 1786, 1930, 7100, 8409
TatI WGTACW 6 cut(s) 2638, 3091, 6832, 7016, 7033, 7181
TauI GCSGC 4 cut(s) 181, 477, 491, 1099
TspGWI ACGGA 6 cut(s) 1992, 2165, 4710, 4969, 6495, 7183
Tth111I GACNNNGTC 1 cut(s) 5543
Van91I CCANNNNNTGG 2 cut(s) 4898, 6093
VpaK11BI GGWCC 9 cut(s) 424, 740, 2494, 2842, 5014, 6055, 6715, 7262, 7707
VspI ATTAAT 4 cut(s) 1203, 3747, 4937, 6548
XagI CCTNNNNNAGG 1 cut(s) 921
XbaI TCTAGA 3 cut(s) 3127, 8044, 8293
XcmI CCANNNNNNNNNTGG 3 cut(s) 1244, 4747, 8108
XhoI CTCGAG 1 cut(s) 440
XmaJI CCTAGG 1 cut(s) 8504
XmiI GTMKAC 5 cut(s) 5062, 6687, 6984, 7505, 8097
XmnI GAANNNNTTC 7 cut(s) 2540, 4998, 5325, 5448, 6011, 8128, 8523
Zsp2I ATGCAT 4 cut(s) 634, 3404, 5500, 7119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.