Rroxscaffold_5G00358210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000582
Physical Location & Seq
Forward (+)
38267899 .. 38276760
8862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00358210.1

Sequence Viewer

Length: 528 bp
ATGTCCGGACTAACCAATTGCGTAAGGCTTGCCATCGACTTGGGTAATGGTCCGGTGAAATTGCACCATGAAATATCTACCGTGGACAACATTGCGAGGTTGCCAATCGAGTTTGGTAATGACCACGAAAAGTTTGATCCACCGAGAAACAAGGACCGGAGTGATCCATTTTTTGGAAATTCGCAGATGAGGGAAAGAAGAGGTGGTATCGAACTATTGATCATGGTTTGGTTTTATACCGATGGAATTGAAAAAGAGCTGCTGGAGAGAATCGACCGCTCCTTGGAGAAGGCTCGCTCCGACCTTATTGCCGCCGGGGAAAGCGTCTCGGCGTGGAAGGTCTCGCGATCTACGATTCGGATACTCGAGGTTGATTCTTGGAGCTCTCTAGGGTTTCAAATGCGGCGAGTGCCGTCTCCGCACCGCCTCATGCTCACTCAAGGCAAGAATGAGGGTGTTGAACAGTTTGAAGAGCGGGATTGGGCCCTTTGTTGCGAAATCCTCTTGTCGTGCATTATTTCTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3883

Protein Analysis

175

Amino Acids

20.04

Weight (kDa)

5.85

Isoelectric Point (pI)

56.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08300 AT1G08300 AT1G08300 AT4G13750
fragaria_vesca FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_4g13620 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660
malus_domestica MD04G1012800.v1.1 MD04G1012900.v1.1 MD04G1013100.v1.1 MD04G1013300.v1.1
prunus_persica Prupe.1G159000_v2.0.a1 Prupe.1G159100_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G358100_v2.0.a1
pyrus_communis pycom04g01020 pycom04g01030
rosa_chinensis RchiOBHm_Chr4g0414341 RchiOBHm_Chr4g0414351 RchiOBHm_Chr6g0275261 RchiOBHm_Chr7g0213881 RchiOBHm_Chr7g0213891
rosa_laevigata RLG00000008153 RLG00000008155 RLG00000013477
rosa_multiflora Rmu_co8510163.1_g000001 Rmu_sc0004087.1_g000027 Rmu_sc0005196.1_g000014 Rmu_sc0005558.1_g000005 Rmu_sc0005558.1_g000006 Rmu_sc0008100.1_g000005 Rmu_sc0008560.1_g000005
rosa_roxburghii Rroxscaffold_5G00358210 Rroxscaffold_5G00358220 Rroxscaffold_7G00187920 Rroxscaffold_7G00187930 Rroxscaffold_7G00193450
rosa_rugosa Rorug04G0127100 Rorug04G0127200 Rorug04G0127300 Rorug04G0127400 Rorug06G0090600
rosa_samantha Rh4AG185200 Rh4AG185300 Rh4AG185500 Rh4BG184700 Rh4BG184800 Rh4CG198000 Rh4CG198100 Rh4DG182400 Rh4DG182600 Rh6AG204100 Rh6BG207000 Rh6CG209600 Rh6DG200000 Rh7AG277400 Rh7CG296400 Rh7CG296500
rosa_wichuraiana Rw4G015850 Rw4G015860 Rw6G017730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 173
AccBSI CCGCTC 2 cut(s) 279, 475
AccII CGCG 1 cut(s) 346
AccIII TCCGGA 1 cut(s) 5
AciI CCGC 6 cut(s) 277, 312, 403, 419, 424, 475
AclWI GGATC 2 cut(s) 131, 158
AcsI RAATTY 1 cut(s) 178
AfiI CCNNNNNNNGG 2 cut(s) 173, 283
AgsI TTSAA 4 cut(s) 251, 398, 461, 470
AluBI AGCT 2 cut(s) 259, 384
AluI AGCT 2 cut(s) 259, 384
Alw21I GWGCWC 1 cut(s) 386
Alw26I GTCTC 3 cut(s) 331, 346, 420
AlwI GGATC 2 cut(s) 131, 158
Ama87I CYCGRG 1 cut(s) 365
Aor13HI TCCGGA 1 cut(s) 5
AoxI GGCC 1 cut(s) 483
ApaI GGGCCC 1 cut(s) 487
ApeKI GCWGC 1 cut(s) 259
ApoI RAATTY 1 cut(s) 178
AspS9I GGNCC 4 cut(s) 50, 154, 483, 484
AsuC2I CCSGG 1 cut(s) 316
AsuHPI GGTGA 1 cut(s) 67
AvaI CYCGRG 1 cut(s) 365
AvaII GGWCC 2 cut(s) 50, 154
BaeGI GKGCMC 1 cut(s) 487
BanII GRGCYC 2 cut(s) 386, 487
Bbv12I GWGCWC 1 cut(s) 386
BbvI GCAGC 1 cut(s) 246
BccI CCATC 2 cut(s) 41, 236
BceAI ACGGC 1 cut(s) 397
BcgI CGANNNNNNTGC 2 cut(s) 290, 324
BciVI GTATCC 1 cut(s) 354
BclI TGATCA 1 cut(s) 219
BcnI CCSGG 1 cut(s) 316
BcoDI GTCTC 3 cut(s) 331, 346, 420
BfaI CTAG 1 cut(s) 389
BfuI GTATCC 1 cut(s) 354
BisI GCNGC 3 cut(s) 260, 312, 404
BlsI GCNGC 3 cut(s) 261, 313, 405
Bme1390I CCNGG 1 cut(s) 316
Bme18I GGWCC 2 cut(s) 50, 154
BmeT110I CYCGRG 1 cut(s) 365
BmgT120I GGNCC 4 cut(s) 50, 154, 483, 484
BmiI GGNNCC 1 cut(s) 485
BmrFI CCNGG 1 cut(s) 316
BpmI CTGGAG 1 cut(s) 284
BpuEI CTTGAG 1 cut(s) 423
BpuMI CCSGG 1 cut(s) 316
BsaI GGTCTC 1 cut(s) 346
BsaJI CCNNGG 3 cut(s) 81, 282, 315
BsaWI WCCGGW 3 cut(s) 5, 52, 156
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 283
Bse3DI GCAATG 1 cut(s) 90
BseAI TCCGGA 1 cut(s) 5
BseDI CCNNGG 3 cut(s) 81, 282, 315
BseLI CCNNNNNNNGG 2 cut(s) 173, 283
BseMI GCAATG 1 cut(s) 90
BseSI GKGCMC 1 cut(s) 487
BseXI GCAGC 1 cut(s) 246
Bsh1236I CGCG 1 cut(s) 346
Bsh1285I CGRYCG 1 cut(s) 277
BshFI GGCC 1 cut(s) 485
BsiEI CGRYCG 1 cut(s) 277
BsiHKAI GWGCWC 1 cut(s) 386
BsiHKCI CYCGRG 1 cut(s) 365
BsiSI CCGG 4 cut(s) 6, 53, 157, 315
BslI CCNNNNNNNGG 2 cut(s) 173, 283
BsmAI GTCTC 3 cut(s) 331, 346, 420
BsmBI CGTCTC 2 cut(s) 331, 420
BsnI GGCC 1 cut(s) 485
Bso31I GGTCTC 1 cut(s) 346
BsoBI CYCGRG 1 cut(s) 365
Bsp120I GGGCCC 1 cut(s) 483
Bsp1286I GDGCHC 2 cut(s) 386, 487
Bsp13I TCCGGA 1 cut(s) 5
Bsp143I GATC 4 cut(s) 136, 163, 219, 347
Bsp68I TCGCGA 1 cut(s) 346
BspACI CCGC 6 cut(s) 277, 312, 403, 419, 424, 475
BspANI GGCC 1 cut(s) 485
BspEI TCCGGA 1 cut(s) 5
BspFNI CGCG 1 cut(s) 346
BspLI GGNNCC 1 cut(s) 485
BspPI GGATC 2 cut(s) 131, 158
BspQI GCTCTTC 1 cut(s) 465
BspTNI GGTCTC 1 cut(s) 346
BsrBI CCGCTC 2 cut(s) 279, 475
BsrDI GCAATG 1 cut(s) 90
BssECI CCNNGG 3 cut(s) 81, 282, 315
BssMI GATC 4 cut(s) 136, 163, 219, 347
BssT1I CCWWGG 1 cut(s) 282
Bst4CI ACNGT 2 cut(s) 82, 465
Bst6I CTCTTC 2 cut(s) 193, 465
BstC8I GCNNGC 2 cut(s) 30, 295
BstDSI CCRYGG 1 cut(s) 81
BstFNI CGCG 1 cut(s) 346
BstKTI GATC 4 cut(s) 139, 166, 222, 350
BstMAI GTCTC 3 cut(s) 331, 346, 420
BstMBI GATC 4 cut(s) 136, 163, 219, 347
BstMCI CGRYCG 1 cut(s) 277
BstMWI GCNNNNNNNGC 2 cut(s) 409, 418
BstSCI CCNGG 1 cut(s) 314
BstSLI GKGCMC 1 cut(s) 487
BstUI CGCG 1 cut(s) 346
BstV1I GCAGC 1 cut(s) 246
BstXI CCANNNNNNTGG 1 cut(s) 40
BsuI GTATCC 1 cut(s) 354
BsuRI GGCC 1 cut(s) 485
BtgI CCRYGG 1 cut(s) 81
BtuMI TCGCGA 1 cut(s) 346
Cac8I GCNNGC 2 cut(s) 30, 295
Cfr13I GGNCC 4 cut(s) 50, 154, 483, 484
CseI GACGC 1 cut(s) 313
CviAII CATG 3 cut(s) 68, 223, 430
CviJI RGCY 5 cut(s) 28, 259, 293, 384, 485
CviKI_1 RGCY 5 cut(s) 28, 259, 293, 384, 485
DpnI GATC 4 cut(s) 138, 165, 221, 349
DpnII GATC 4 cut(s) 136, 163, 219, 347
Eam1104I CTCTTC 2 cut(s) 193, 465
EarI CTCTTC 2 cut(s) 193, 465
Ecl136II GAGCTC 1 cut(s) 384
Eco130I CCWWGG 1 cut(s) 282
Eco24I GRGCYC 2 cut(s) 386, 487
Eco31I GGTCTC 1 cut(s) 346
Eco47I GGWCC 2 cut(s) 50, 154
Eco53kI GAGCTC 1 cut(s) 384
Eco88I CYCGRG 1 cut(s) 365
EcoICRI GAGCTC 1 cut(s) 384
EcoO109I RGGNCCY 1 cut(s) 484
EcoT14I CCWWGG 1 cut(s) 282
EcoT38I GRGCYC 2 cut(s) 386, 487
ErhI CCWWGG 1 cut(s) 282
Esp3I CGTCTC 2 cut(s) 331, 420
FaeI CATG 3 cut(s) 71, 226, 433
FaiI YATR 4 cut(s) 69, 224, 237, 431
FatI CATG 3 cut(s) 67, 222, 429
FauI CCCGC 1 cut(s) 468
FbaI TGATCA 1 cut(s) 219
Fnu4HI GCNGC 3 cut(s) 260, 312, 404
FriOI GRGCYC 2 cut(s) 386, 487
Fsp4HI GCNGC 3 cut(s) 260, 312, 404
FspBI CTAG 1 cut(s) 389
GluI GCNGC 3 cut(s) 260, 312, 404
GsuI CTGGAG 1 cut(s) 284
HaeIII GGCC 1 cut(s) 485
HapII CCGG 4 cut(s) 6, 53, 157, 315
HgaI GACGC 1 cut(s) 313
Hin1II CATG 3 cut(s) 71, 226, 433
HinfI GANTC 3 cut(s) 270, 355, 374
HpaII CCGG 4 cut(s) 6, 53, 157, 315
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 2 cut(s) 301, 360
Hpy188III TCNNGA 2 cut(s) 6, 345
Hpy8I GTNNAC 1 cut(s) 85
HpyAV CCTTC 2 cut(s) 283, 331
HpyCH4III ACNGT 2 cut(s) 82, 465
HpyCH4V TGCA 2 cut(s) 64, 513
HpyF10VI GCNNNNNNNGC 2 cut(s) 409, 418
Hsp92II CATG 3 cut(s) 71, 226, 433
Kpn2I TCCGGA 1 cut(s) 5
Ksp22I TGATCA 1 cut(s) 219
Kzo9I GATC 4 cut(s) 136, 163, 219, 347
LguI GCTCTTC 1 cut(s) 465
LmnI GCTCC 3 cut(s) 284, 302, 381
LpnPI CCDG 5 cut(s) 19, 66, 170, 248, 328
Lsp1109I GCAGC 1 cut(s) 246
MaeI CTAG 1 cut(s) 389
MalI GATC 4 cut(s) 138, 165, 221, 349
MbiI CCGCTC 2 cut(s) 279, 475
MboI GATC 4 cut(s) 136, 163, 219, 347
MboII GAAGA 2 cut(s) 210, 482
MfeI CAATTG 1 cut(s) 16
MhlI GDGCHC 2 cut(s) 386, 487
MluCI AATT 4 cut(s) 16, 59, 178, 246
MmeI TCCRAC 1 cut(s) 324
MnlI CCTC 7 cut(s) 90, 183, 194, 361, 437, 445, 512
MroI TCCGGA 1 cut(s) 5
MspI CCGG 4 cut(s) 6, 53, 157, 315
MspR9I CCNGG 1 cut(s) 316
MunI CAATTG 1 cut(s) 16
MvnI CGCG 1 cut(s) 346
MwoI GCNNNNNNNGC 2 cut(s) 409, 418
NciI CCSGG 1 cut(s) 316
NdeII GATC 4 cut(s) 136, 163, 219, 347
NlaIII CATG 3 cut(s) 71, 226, 433
NlaIV GGNNCC 1 cut(s) 485
NmeAIII GCCGAG 1 cut(s) 308
NruI TCGCGA 1 cut(s) 346
PaeR7I CTCGAG 1 cut(s) 365
PciSI GCTCTTC 1 cut(s) 465
PcsI WCGNNNNNNNCGW 1 cut(s) 350
PfeI GAWTC 3 cut(s) 270, 355, 374
PflMI CCANNNNNTGG 1 cut(s) 173
PkrI GCNGC 3 cut(s) 261, 313, 405
Psp124BI GAGCTC 1 cut(s) 386
PspN4I GGNNCC 1 cut(s) 485
PspOMI GGGCCC 1 cut(s) 483
PspPI GGNCC 4 cut(s) 50, 154, 483, 484
PspXI VCTCGAGB 1 cut(s) 365
RruI TCGCGA 1 cut(s) 346
SacI GAGCTC 1 cut(s) 386
SapI GCTCTTC 1 cut(s) 465
SatI GCNGC 3 cut(s) 260, 312, 404
Sau3AI GATC 4 cut(s) 136, 163, 219, 347
Sau96I GGNCC 4 cut(s) 50, 154, 483, 484
ScrFI CCNGG 1 cut(s) 316
SduI GDGCHC 2 cut(s) 386, 487
SetI ASST 7 cut(s) 101, 205, 261, 306, 342, 372, 386
Sfr274I CTCGAG 1 cut(s) 365
SinI GGWCC 2 cut(s) 50, 154
SlaI CTCGAG 1 cut(s) 365
SmlI CTYRAG 2 cut(s) 365, 438
SmoI CTYRAG 2 cut(s) 365, 438
Sse9I AATT 4 cut(s) 16, 59, 178, 246
SsiI CCGC 6 cut(s) 277, 312, 403, 419, 424, 475
SspMI CTAG 1 cut(s) 389
SstI GAGCTC 1 cut(s) 386
StyD4I CCNGG 1 cut(s) 314
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 2 cut(s) 82, 465
TaqI TCGA 5 cut(s) 36, 108, 210, 273, 366
TasI AATT 4 cut(s) 16, 59, 178, 246
TauI GCSGC 2 cut(s) 314, 406
TfiI GAWTC 3 cut(s) 270, 355, 374
TseI GCWGC 1 cut(s) 259
TspDTI ATGAA 1 cut(s) 84
Van91I CCANNNNNTGG 1 cut(s) 173
VpaK11BI GGWCC 2 cut(s) 50, 154
XapI RAATTY 1 cut(s) 178
XhoI CTCGAG 1 cut(s) 365
XspI CTAG 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.