Rroxscaffold_7G00187920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000582
Physical Location & Seq
Forward (+)
27343797 .. 27346796
3000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00187920.1

Sequence Viewer

Length: 744 bp
ATGAGTGAAGGAAGAAATATGAGTACGAACCGTAACTCTAGCATTCCGAGTAAGCGTTTTGTGGCAAGCACATTAGGTTTGATTCTCGAAAACTCGGAGGATGAATGTATCAATGATGATTTACATGATGAAAAAGATTATAATCATGACCGGGTCACATGCGGTGTGGTTAACATCTCTTCACAATCGGTGGAAGGTCGACCGTGTGAGCAAATGTCCTTACCCATCCGCAATAGAAGAGATACAACGGCTTGGGTTGGACCAGCTTTTCCCCAGAGTGGCAGCCAAAAGCACAAAGGGCCTAATGACTCGCTTAAAAAGAAGAGAAAATCTGAAATTCCTCTAAATGCAATCTCTATGCCCCCCAAATTGTGTAAGACAGAAAAGGTAGAACAAGTTGCTCAGCCAATAGAGAATGGCGGGGGAGCCAATAATGTGAGAAATTTGGATGGAAGGAAAGCGGAAAGTCGGCCACCTGTTGATTGGAGAACCGCACCAAGGTATGATTATGCTTGTGCAAATGGCTTTAGGACACGGCACCAATTTTACAGCCTAGAAACTGGAGCGGGAGAGAAAGCTTTGGCGGTCAAGAAATTGGTCACCTCATTGAAATTCTCGAAGGATTTTACCTTACCAAGATACTCTTTGAAGAGTACCTTGTTGAGATCTTCCTTAATGAATTCCGATATGTCCTCGAAGGAATTTACCATATCAAGCTCTTCCTTGATGGGCCCCTCGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3883

Protein Analysis

247

Amino Acids

27.42

Weight (kDa)

9.36

Isoelectric Point (pI)

61.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08300 AT1G08300 AT1G08300 AT4G13750
fragaria_vesca FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_4g13620 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660
malus_domestica MD04G1012800.v1.1 MD04G1012900.v1.1 MD04G1013100.v1.1 MD04G1013300.v1.1
prunus_persica Prupe.1G159000_v2.0.a1 Prupe.1G159100_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G358100_v2.0.a1
pyrus_communis pycom04g01020 pycom04g01030
rosa_chinensis RchiOBHm_Chr4g0414341 RchiOBHm_Chr4g0414351 RchiOBHm_Chr6g0275261 RchiOBHm_Chr7g0213881 RchiOBHm_Chr7g0213891
rosa_laevigata RLG00000008153 RLG00000008155 RLG00000013477
rosa_multiflora Rmu_co8510163.1_g000001 Rmu_sc0004087.1_g000027 Rmu_sc0005196.1_g000014 Rmu_sc0005558.1_g000005 Rmu_sc0005558.1_g000006 Rmu_sc0008100.1_g000005 Rmu_sc0008560.1_g000005
rosa_roxburghii Rroxscaffold_5G00358210 Rroxscaffold_5G00358220 Rroxscaffold_7G00187920 Rroxscaffold_7G00187930 Rroxscaffold_7G00193450
rosa_rugosa Rorug04G0127100 Rorug04G0127200 Rorug04G0127300 Rorug04G0127400 Rorug06G0090600
rosa_samantha Rh4AG185200 Rh4AG185300 Rh4AG185500 Rh4BG184700 Rh4BG184800 Rh4CG198000 Rh4CG198100 Rh4DG182400 Rh4DG182600 Rh6AG204100 Rh6BG207000 Rh6CG209600 Rh6DG200000 Rh7AG277400 Rh7CG296400 Rh7CG296500
rosa_wichuraiana Rw4G015850 Rw4G015860 Rw6G017730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 141
AccB1I GGYRCC 1 cut(s) 537
AccBSI CCGCTC 1 cut(s) 566
AccI GTMKAC 1 cut(s) 199
AciI CCGC 7 cut(s) 162, 229, 420, 461, 492, 566, 584
AcoI YGGCCR 1 cut(s) 470
AcsI RAATTY 5 cut(s) 336, 442, 611, 679, 701
AfaI GTAC 2 cut(s) 25, 655
AfiI CCNNNNNNNGG 2 cut(s) 278, 498
AgsI TTSAA 2 cut(s) 610, 649
AluBI AGCT 3 cut(s) 266, 578, 717
AluI AGCT 3 cut(s) 266, 578, 717
AoxI GGCC 3 cut(s) 299, 470, 730
ApaI GGGCCC 1 cut(s) 734
ApeKI GCWGC 1 cut(s) 282
ApoI RAATTY 5 cut(s) 336, 442, 611, 679, 701
AspS9I GGNCC 4 cut(s) 260, 299, 730, 731
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 592
AvaII GGWCC 1 cut(s) 260
BaeGI GKGCMC 1 cut(s) 734
BanI GGYRCC 1 cut(s) 537
BanII GRGCYC 1 cut(s) 734
BbvI GCAGC 1 cut(s) 294
BccI CCATC 3 cut(s) 233, 443, 721
BceAI ACGGC 2 cut(s) 264, 551
BcnI CCSGG 1 cut(s) 152
BfaI CTAG 2 cut(s) 39, 554
BglII AGATCT 1 cut(s) 665
BisI GCNGC 1 cut(s) 283
BlpI GCTNAGC 1 cut(s) 402
BlsI GCNGC 1 cut(s) 284
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 4 cut(s) 260, 299, 730, 731
BmiI GGNNCC 4 cut(s) 427, 539, 732, 733
BmrFI CCNGG 1 cut(s) 152
BpmI CTGGAG 1 cut(s) 582
Bpu1102I GCTNAGC 1 cut(s) 402
BpuMI CCSGG 1 cut(s) 152
BsaBI GATNNNNATC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 497
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 498
Bse1I ACTGG 1 cut(s) 565
Bse8I GATNNNNATC 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 497
BseGI GGATG 3 cut(s) 106, 225, 454
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 2 cut(s) 278, 498
BseMII CTCAG 1 cut(s) 416
BseNI ACTGG 1 cut(s) 565
BseSI GKGCMC 1 cut(s) 734
BseXI GCAGC 1 cut(s) 294
Bsh1285I CGRYCG 1 cut(s) 203
BshFI GGCC 3 cut(s) 301, 472, 732
BshNI GGYRCC 1 cut(s) 537
BsiEI CGRYCG 1 cut(s) 203
BsiSI CCGG 1 cut(s) 151
BslI CCNNNNNNNGG 2 cut(s) 278, 498
BsmI GAATGC 1 cut(s) 42
BsnI GGCC 3 cut(s) 301, 472, 732
Bsp120I GGGCCC 1 cut(s) 730
Bsp1286I GDGCHC 1 cut(s) 734
Bsp143I GATC 1 cut(s) 665
Bsp1720I GCTNAGC 1 cut(s) 402
BspACI CCGC 7 cut(s) 162, 229, 420, 461, 492, 566, 584
BspANI GGCC 3 cut(s) 301, 472, 732
BspCNI CTCAG 1 cut(s) 415
BspHI TCATGA 1 cut(s) 145
BspLI GGNNCC 4 cut(s) 427, 539, 732, 733
BspQI GCTCTTC 1 cut(s) 724
BspT107I GGYRCC 1 cut(s) 537
BsrBI CCGCTC 1 cut(s) 566
BsrI ACTGG 1 cut(s) 565
BssECI CCNNGG 1 cut(s) 497
BssMI GATC 1 cut(s) 665
BssT1I CCWWGG 1 cut(s) 497
Bst4CI ACNGT 2 cut(s) 32, 204
Bst6I CTCTTC 5 cut(s) 184, 232, 317, 644, 724
BstC8I GCNNGC 1 cut(s) 67
BstDEI CTNAG 1 cut(s) 402
BstEII GGTNACC 1 cut(s) 598
BstF5I GGATG 3 cut(s) 106, 225, 454
BstKTI GATC 1 cut(s) 668
BstMBI GATC 1 cut(s) 665
BstMCI CGRYCG 1 cut(s) 203
BstMWI GCNNNNNNNGC 1 cut(s) 298
BstNSI RCATGY 1 cut(s) 162
BstPI GGTNACC 1 cut(s) 598
BstSCI CCNGG 1 cut(s) 150
BstSLI GKGCMC 1 cut(s) 734
BstV1I GCAGC 1 cut(s) 294
BstX2I RGATCY 1 cut(s) 665
BstYI RGATCY 1 cut(s) 665
BsuRI GGCC 3 cut(s) 301, 472, 732
BtsCI GGATG 3 cut(s) 106, 225, 454
Cac8I GCNNGC 1 cut(s) 67
CciI TCATGA 1 cut(s) 145
Cfr13I GGNCC 4 cut(s) 260, 299, 730, 731
Csp6I GTAC 2 cut(s) 24, 654
CviAII CATG 3 cut(s) 125, 146, 159
CviQI GTAC 2 cut(s) 24, 654
DdeI CTNAG 1 cut(s) 402
DpnI GATC 1 cut(s) 667
DpnII GATC 1 cut(s) 665
EaeI YGGCCR 1 cut(s) 470
Eam1104I CTCTTC 5 cut(s) 184, 232, 317, 644, 724
EarI CTCTTC 5 cut(s) 184, 232, 317, 644, 724
Eco130I CCWWGG 1 cut(s) 497
Eco24I GRGCYC 1 cut(s) 734
Eco47I GGWCC 1 cut(s) 260
Eco91I GGTNACC 1 cut(s) 598
EcoO109I RGGNCCY 2 cut(s) 299, 731
EcoO65I GGTNACC 1 cut(s) 598
EcoRI GAATTC 1 cut(s) 679
EcoT14I CCWWGG 1 cut(s) 497
EcoT38I GRGCYC 1 cut(s) 734
ErhI CCWWGG 1 cut(s) 497
FaeI CATG 3 cut(s) 128, 149, 162
FalI AAGNNNNNCTT 4 cut(s) 628, 660, 641, 673
FatI CATG 3 cut(s) 124, 145, 158
FauI CCCGC 2 cut(s) 413, 559
FblI GTMKAC 1 cut(s) 199
Fnu4HI GCNGC 1 cut(s) 283
FokI GGATG 3 cut(s) 113, 212, 461
FriOI GRGCYC 1 cut(s) 734
Fsp4HI GCNGC 1 cut(s) 283
FspBI CTAG 2 cut(s) 39, 554
GluI GCNGC 1 cut(s) 283
GsuI CTGGAG 1 cut(s) 582
HaeIII GGCC 3 cut(s) 301, 472, 732
HapII CCGG 1 cut(s) 151
Hin1II CATG 3 cut(s) 128, 149, 162
HincII GTYRAC 2 cut(s) 172, 200
HindII GTYRAC 2 cut(s) 172, 200
HindIII AAGCTT 1 cut(s) 576
HinfI GANTC 2 cut(s) 82, 308
HpaI GTTAAC 1 cut(s) 172
HpaII CCGG 1 cut(s) 151
HphI GGTGA 1 cut(s) 592
Hpy166II GTNNAC 2 cut(s) 172, 200
Hpy188I TCNGA 4 cut(s) 48, 97, 334, 685
Hpy188III TCNNGA 4 cut(s) 86, 146, 589, 616
Hpy8I GTNNAC 2 cut(s) 172, 200
HpyAV CCTTC 4 cut(s) 188, 447, 613, 691
HpyCH4III ACNGT 2 cut(s) 32, 204
HpyCH4V TGCA 2 cut(s) 350, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 298
HpyF3I CTNAG 1 cut(s) 402
Hsp92II CATG 3 cut(s) 128, 149, 162
KspAI GTTAAC 1 cut(s) 172
Kzo9I GATC 1 cut(s) 665
LguI GCTCTTC 1 cut(s) 724
LmnI GCTCC 2 cut(s) 425, 563
LpnPI CCDG 5 cut(s) 164, 276, 287, 489, 546
Lsp1109I GCAGC 1 cut(s) 294
MaeI CTAG 2 cut(s) 39, 554
MaeIII GTNAC 3 cut(s) 32, 154, 598
MalI GATC 1 cut(s) 667
MbiI CCGCTC 1 cut(s) 566
MboI GATC 1 cut(s) 665
MboII GAAGA 7 cut(s) 24, 171, 249, 334, 660, 661, 711
MflI RGATCY 1 cut(s) 665
MhlI GDGCHC 1 cut(s) 734
MluCI AATT 8 cut(s) 336, 368, 442, 542, 593, 611, 679, 701
MlyI GAGTC 1 cut(s) 302
MmeI TCCRAC 1 cut(s) 238
MnlI CCTC 4 cut(s) 91, 351, 613, 703
MseI TTAA 3 cut(s) 171, 315, 674
MspI CCGG 1 cut(s) 151
MspR9I CCNGG 1 cut(s) 152
Mva1269I GAATGC 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 298
NciI CCSGG 1 cut(s) 152
NdeII GATC 1 cut(s) 665
NlaIII CATG 3 cut(s) 128, 149, 162
NlaIV GGNNCC 4 cut(s) 427, 539, 732, 733
NmuCI GTSAC 2 cut(s) 154, 598
NspI RCATGY 1 cut(s) 162
PagI TCATGA 1 cut(s) 145
PciSI GCTCTTC 1 cut(s) 724
PctI GAATGC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 82
PflFI GACNNNGTC 1 cut(s) 152
PkrI GCNGC 1 cut(s) 284
PleI GAGTC 1 cut(s) 302
PpsI GAGTC 1 cut(s) 302
PsiI TTATAA 1 cut(s) 141
PspEI GGTNACC 1 cut(s) 598
PspN4I GGNNCC 4 cut(s) 427, 539, 732, 733
PspOMI GGGCCC 1 cut(s) 730
PspPI GGNCC 4 cut(s) 260, 299, 730, 731
PsuI RGATCY 1 cut(s) 665
PsyI GACNNNGTC 1 cut(s) 152
RsaI GTAC 2 cut(s) 25, 655
RsaNI GTAC 2 cut(s) 24, 654
SalI GTCGAC 1 cut(s) 198
SapI GCTCTTC 1 cut(s) 724
SaqAI TTAA 3 cut(s) 171, 315, 674
SatI GCNGC 1 cut(s) 283
Sau3AI GATC 1 cut(s) 665
Sau96I GGNCC 4 cut(s) 260, 299, 730, 731
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 1 cut(s) 734
SinI GGWCC 1 cut(s) 260
Sse9I AATT 8 cut(s) 336, 368, 442, 542, 593, 611, 679, 701
SsiI CCGC 7 cut(s) 162, 229, 420, 461, 492, 566, 584
SspMI CTAG 2 cut(s) 39, 554
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 1 cut(s) 497
TaaI ACNGT 2 cut(s) 32, 204
TaqI TCGA 5 cut(s) 87, 199, 617, 695, 737
TasI AATT 8 cut(s) 336, 368, 442, 542, 593, 611, 679, 701
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 3 cut(s) 171, 315, 674
Tru9I TTAA 3 cut(s) 171, 315, 674
TseFI GTSAC 2 cut(s) 154, 598
TseI GCWGC 1 cut(s) 282
Tsp45I GTSAC 2 cut(s) 154, 598
TspDTI ATGAA 3 cut(s) 117, 144, 692
Tth111I GACNNNGTC 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 260
XapI RAATTY 5 cut(s) 336, 442, 611, 679, 701
XceI RCATGY 1 cut(s) 162
XcmI CCANNNNNNNNNTGG 1 cut(s) 480
XmiI GTMKAC 1 cut(s) 199
XspI CTAG 2 cut(s) 39, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.