Rorug04G0127200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000582
Physical Location & Seq
Forward (+)
20193336 .. 20208379
15044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0127200.1

Sequence Viewer

Length: 1353 bp
ATGTGGAGGAATAGACCAGCATATAAATGGATACATGACCTTCTGAAACAGTTCAACACTGATATTGCATGTGTACGACTAGGAAAAGTTCATGTGATCGCAGTCAAATCACCTGAAATTGCCAGAGAATTCTTGAAGAAACACAACGCAGTTTTCGCATCACGACCCATTACTATGGCTACTAACATCTTAAGTAGTGGGTACTTGGCAACAGTTGTTGTACCTTTGGGAGAGCAGTGGAAGAAAATGAAAAGAACTTTGGTTGCCGACGTGTTTAATCAGTCCAGACTCCGCTGGCTACTCGATAAGAGAAACGATGAAGCAGACAATCTTGTGAAGTTCCTCTACAGTCAGTGCTCAAACAACGAGAATGGTTCGGTGGTGAATGTGAGAAATGCAGCTCAACATTACCCAATGAGTGTGATGAGAAGGATGATCTTCAACACGAGGTACTTTGGGAAAGGAAGAGAAGATGGAGGGCCAGGACTTGAAGAAGAAAGACATGTCTCTGCACTTTTCACAATACTCTTGCATTCGTATGCATTCTGTGTATCCGATTACCTTCCATGGTTGAGACCTTTTGACATAGGTGGGCATGAGAAGAAGGTGAGGGATGCTTTGAAAATTATTAAGCAGTATCAGGACCCCATTATAGATGAGAGAGTACGAAAGTGGAGGTGCTCAAATCAGGAGAATAGGATCAAGGAGCCTGTAGAGGAGGACCTGCTCGATGTTTTCATCTCACTCAAAGGTGCAGATGGGCAGCCTTTATTATCAGCTGAAGAAATCAAAGCACAAATCACTGACCTACAACTTGCCACAGTGGATAATCCTTTCAATTCAGCAGAATGGGCTCTTTCAGAAATGCTGAACCAACCTGAGATGCTTACAAAAGCACAAGAGGAACTAAATAGGGTAGTGGGAATCCACATGCTTGTTCAAGAATTTCATATCCCTCATCTCCCTTACATAAGGGCTTGTGTAAGAGAATCGCTCAGGCTGCATCCAGTTGCACCATTTAATCTCCCCCATGTCTCATGTGCTGATGCTATAGTAGCAGGCTACTTCATCCCAAAGGGCAGTAGTGTTCTTTTGAGTCGTTTAGACCTTGGTCGTGAACATGAGCTAAGGTTCATTTCATTTTCTACTGGAAGGAGAGGTTGCCCGGGTGGTACGCTTGGGACAAACATAACTGTGATGCTCCTTGGTAGGCTTCTTCAAGGGTTTACATGGAGCATGCCACCTAAGGTGGATGAGATTGACCTCACTGAGCAGGCTCAATCCCTCTTCAAGCTCAATGCATTGTATGCGCATGCTAAACCTCGCTTGCCTGCTGCTGTGTACCCAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3883

Protein Analysis

450

Amino Acids

51.28

Weight (kDa)

9.01

Isoelectric Point (pI)

47.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 15 - 373 3.5e-52 Cytochrome P450
p450 PF00067 374 - 426 1.6e-07 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08300 AT1G08300 AT1G08300 AT4G13750
fragaria_vesca FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_4g13620 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660
malus_domestica MD04G1012800.v1.1 MD04G1012900.v1.1 MD04G1013100.v1.1 MD04G1013300.v1.1
prunus_persica Prupe.1G159000_v2.0.a1 Prupe.1G159100_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G358100_v2.0.a1
pyrus_communis pycom04g01020 pycom04g01030
rosa_chinensis RchiOBHm_Chr4g0414341 RchiOBHm_Chr4g0414351 RchiOBHm_Chr6g0275261 RchiOBHm_Chr7g0213881 RchiOBHm_Chr7g0213891
rosa_laevigata RLG00000008153 RLG00000008155 RLG00000013477
rosa_multiflora Rmu_co8510163.1_g000001 Rmu_sc0004087.1_g000027 Rmu_sc0005196.1_g000014 Rmu_sc0005558.1_g000005 Rmu_sc0005558.1_g000006 Rmu_sc0008100.1_g000005 Rmu_sc0008560.1_g000005
rosa_roxburghii Rroxscaffold_5G00358210 Rroxscaffold_5G00358220 Rroxscaffold_7G00187920 Rroxscaffold_7G00187930 Rroxscaffold_7G00193450
rosa_rugosa Rorug04G0127100 Rorug04G0127200 Rorug04G0127300 Rorug04G0127400 Rorug06G0090600
rosa_samantha Rh4AG185200 Rh4AG185300 Rh4AG185500 Rh4BG184700 Rh4BG184800 Rh4CG198000 Rh4CG198100 Rh4DG182400 Rh4DG182600 Rh6AG204100 Rh6BG207000 Rh6CG209600 Rh6DG200000 Rh7AG277400 Rh7CG296400 Rh7CG296500
rosa_wichuraiana Rw4G015850 Rw4G015860 Rw6G017730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1311
Acc36I ACCTGC 1 cut(s) 732
AciI CCGC 1 cut(s) 292
AclWI GGATC 1 cut(s) 707
AcsI RAATTY 2 cut(s) 128, 944
AcuI CTGAAG 1 cut(s) 801
AfaI GTAC 7 cut(s) 75, 203, 222, 452, 666, 1174, 1343
AflII CTTAAG 1 cut(s) 190
AflIII ACRYGT 2 cut(s) 270, 502
AgsI TTSAA 9 cut(s) 55, 136, 442, 491, 622, 838, 941, 1220, 1291
AjiI CACGTC 1 cut(s) 271
AjnI CCWGG 1 cut(s) 481
AjuI GAANNNNNNNTTGG 2 cut(s) 242, 274
AluBI AGCT 4 cut(s) 401, 779, 1126, 1294
AluI AGCT 4 cut(s) 401, 779, 1126, 1294
Alw21I GWGCWC 2 cut(s) 359, 683
Alw26I GTCTC 3 cut(s) 511, 568, 1039
AlwI GGATC 1 cut(s) 707
Ama87I CYCGRG 1 cut(s) 1165
AoxI GGCC 1 cut(s) 479
ApeKI GCWGC 4 cut(s) 398, 763, 1000, 1334
ApoI RAATTY 2 cut(s) 128, 944
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 1 cut(s) 1312
AspS9I GGNCC 3 cut(s) 479, 643, 721
AsuC2I CCSGG 2 cut(s) 1166, 1167
AsuHPI GGTGA 3 cut(s) 102, 394, 619
AvaI CYCGRG 1 cut(s) 1165
AvaII GGWCC 2 cut(s) 643, 721
AxyI CCTNAGG 1 cut(s) 1245
BanII GRGCYC 1 cut(s) 856
BarI GAAGNNNNNNTAC 2 cut(s) 329, 361
BauI CACGAG 1 cut(s) 445
Bbv12I GWGCWC 2 cut(s) 359, 683
BbvI GCAGC 4 cut(s) 410, 775, 987, 1321
BccI CCATC 2 cut(s) 467, 752
BciT130I CCWGG 1 cut(s) 483
BciVI GTATCC 2 cut(s) 24, 562
BcnI CCSGG 2 cut(s) 1166, 1167
BcoDI GTCTC 3 cut(s) 511, 568, 1039
BfaI CTAG 1 cut(s) 80
BfmI CTRYAG 3 cut(s) 346, 711, 1050
BfrI CTTAAG 1 cut(s) 190
BfuAI ACCTGC 1 cut(s) 732
BfuI GTATCC 2 cut(s) 24, 562
BisI GCNGC 4 cut(s) 399, 764, 1001, 1335
BlsI GCNGC 4 cut(s) 400, 765, 1002, 1336
Bme1390I CCNGG 3 cut(s) 483, 1166, 1167
Bme18I GGWCC 2 cut(s) 643, 721
BmeT110I CYCGRG 1 cut(s) 1165
BmgBI CACGTC 1 cut(s) 271
BmgT120I GGNCC 3 cut(s) 479, 643, 721
BmiI GGNNCC 2 cut(s) 645, 708
BmrFI CCNGG 3 cut(s) 483, 1166, 1167
BmsI GCATC 6 cut(s) 167, 604, 873, 1012, 1036, 1188
BoxI GACNNNNGTC 1 cut(s) 1110
BplI GAGNNNNNCTC 2 cut(s) 978, 1010
Bpu10I CCTNAGC 2 cut(s) 995, 1127
BpuMI CCSGG 2 cut(s) 1166, 1167
BsaI GGTCTC 1 cut(s) 568
BsaJI CCNNGG 4 cut(s) 566, 1108, 1165, 1204
Bse1I ACTGG 2 cut(s) 1007, 1153
Bse21I CCTNAGG 1 cut(s) 1245
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 4 cut(s) 566, 1108, 1165, 1204
BseGI GGATG 5 cut(s) 438, 619, 1003, 1068, 1258
BseMII CTCAG 3 cut(s) 870, 1009, 1260
BseNI ACTGG 2 cut(s) 1007, 1153
BseRI GAGGAG 1 cut(s) 731
BseXI GCAGC 4 cut(s) 410, 775, 987, 1321
BsgI GTGCAG 2 cut(s) 495, 774
BshFI GGCC 1 cut(s) 481
BsiHKAI GWGCWC 2 cut(s) 359, 683
BsiHKCI CYCGRG 1 cut(s) 1165
BsiSI CCGG 1 cut(s) 1166
BslFI GGGAC 1 cut(s) 1195
BsmAI GTCTC 3 cut(s) 511, 568, 1039
BsmFI GGGAC 1 cut(s) 1195
BsmI GAATGC 2 cut(s) 532, 542
BsnI GGCC 1 cut(s) 481
Bso31I GGTCTC 1 cut(s) 568
BsoBI CYCGRG 1 cut(s) 1165
Bsp1286I GDGCHC 3 cut(s) 359, 683, 856
Bsp143I GATC 3 cut(s) 96, 435, 699
Bsp19I CCATGG 1 cut(s) 566
BspACI CCGC 1 cut(s) 292
BspANI GGCC 1 cut(s) 481
BspCNI CTCAG 3 cut(s) 871, 1008, 1261
BspLI GGNNCC 2 cut(s) 645, 708
BspMI ACCTGC 1 cut(s) 732
BspPI GGATC 1 cut(s) 707
BspTI CTTAAG 1 cut(s) 190
BspTNI GGTCTC 1 cut(s) 568
BsrI ACTGG 2 cut(s) 1007, 1153
BssECI CCNNGG 4 cut(s) 566, 1108, 1165, 1204
BssMI GATC 3 cut(s) 96, 435, 699
BssSI CACGAG 1 cut(s) 445
BssT1I CCWWGG 3 cut(s) 566, 1108, 1204
Bst2BI CACGAG 1 cut(s) 445
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 5 cut(s) 51, 214, 350, 823, 1195
Bst6I CTCTTC 2 cut(s) 460, 1292
BstAFI CTTAAG 1 cut(s) 190
BstAPI GCANNNNNTGC 1 cut(s) 1307
BstC8I GCNNGC 7 cut(s) 296, 1060, 1238, 1275, 1314, 1328, 1332
BstDEI CTNAG 5 cut(s) 879, 995, 1127, 1245, 1269
BstDSI CCRYGG 1 cut(s) 566
BstF5I GGATG 5 cut(s) 438, 619, 1003, 1068, 1258
BstHHI GCGC 1 cut(s) 1312
BstKTI GATC 3 cut(s) 99, 438, 702
BstMAI GTCTC 3 cut(s) 511, 568, 1039
BstMBI GATC 3 cut(s) 96, 435, 699
BstMWI GCNNNNNNNGC 5 cut(s) 155, 851, 1000, 1055, 1307
BstNI CCWGG 1 cut(s) 483
BstNSI RCATGY 5 cut(s) 72, 506, 934, 1240, 1316
BstPAI GACNNNNGTC 1 cut(s) 1110
BstSCI CCNGG 3 cut(s) 481, 1164, 1165
BstSFI CTRYAG 3 cut(s) 346, 711, 1050
BstV1I GCAGC 4 cut(s) 410, 775, 987, 1321
BstXI CCANNNNNNTGG 1 cut(s) 175
Bsu36I CCTNAGG 1 cut(s) 1245
BsuI GTATCC 2 cut(s) 24, 562
BsuRI GGCC 1 cut(s) 481
BtgI CCRYGG 1 cut(s) 566
BtrI CACGTC 1 cut(s) 271
BtsCI GGATG 5 cut(s) 438, 619, 1003, 1068, 1258
BtsI GCAGTG 1 cut(s) 242
BtsIMutI CAGTG 6 cut(s) 57, 242, 359, 801, 828, 1266
BveI ACCTGC 1 cut(s) 732
Cac8I GCNNGC 7 cut(s) 296, 1060, 1238, 1275, 1314, 1328, 1332
CfoI GCGC 1 cut(s) 1312
Cfr13I GGNCC 3 cut(s) 479, 643, 721
Cfr9I CCCGGG 1 cut(s) 1165
Csp6I GTAC 7 cut(s) 74, 202, 221, 451, 665, 1173, 1342
CviQI GTAC 7 cut(s) 74, 202, 221, 451, 665, 1173, 1342
DdeI CTNAG 5 cut(s) 879, 995, 1127, 1245, 1269
DpnI GATC 3 cut(s) 98, 437, 701
DpnII GATC 3 cut(s) 96, 435, 699
Eam1104I CTCTTC 2 cut(s) 460, 1292
EarI CTCTTC 2 cut(s) 460, 1292
Eco130I CCWWGG 3 cut(s) 566, 1108, 1204
Eco24I GRGCYC 1 cut(s) 856
Eco31I GGTCTC 1 cut(s) 568
Eco47I GGWCC 2 cut(s) 643, 721
Eco57I CTGAAG 1 cut(s) 801
Eco81I CCTNAGG 1 cut(s) 1245
Eco88I CYCGRG 1 cut(s) 1165
EcoO109I RGGNCCY 2 cut(s) 643, 721
EcoRI GAATTC 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 481
EcoT14I CCWWGG 3 cut(s) 566, 1108, 1204
EcoT22I ATGCAT 2 cut(s) 544, 1303
EcoT38I GRGCYC 1 cut(s) 856
ErhI CCWWGG 3 cut(s) 566, 1108, 1204
FaqI GGGAC 1 cut(s) 1195
Fnu4HI GCNGC 4 cut(s) 399, 764, 1001, 1335
FokI GGATG 5 cut(s) 445, 626, 990, 1055, 1265
FriOI GRGCYC 1 cut(s) 856
Fsp4HI GCNGC 4 cut(s) 399, 764, 1001, 1335
FspAI RTGCGCAY 1 cut(s) 1311
FspBI CTAG 1 cut(s) 80
FspI TGCGCA 1 cut(s) 1311
GlaI GCGC 1 cut(s) 1311
GluI GCNGC 4 cut(s) 399, 764, 1001, 1335
HaeIII GGCC 1 cut(s) 481
HapII CCGG 1 cut(s) 1166
HhaI GCGC 1 cut(s) 1312
Hin6I GCGC 1 cut(s) 1310
HinP1I GCGC 1 cut(s) 1310
HinfI GANTC 4 cut(s) 288, 924, 989, 1096
HpaII CCGG 1 cut(s) 1166
HphI GGTGA 3 cut(s) 102, 394, 619
Hpy166II GTNNAC 4 cut(s) 74, 1118, 1227, 1342
Hpy188I TCNGA 3 cut(s) 45, 556, 862
Hpy188III TCNNGA 7 cut(s) 133, 162, 285, 641, 689, 941, 1115
Hpy8I GTNNAC 4 cut(s) 74, 1118, 1227, 1342
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 5 cut(s) 50, 423, 572, 598, 1146
HpyCH4III ACNGT 5 cut(s) 51, 214, 350, 823, 1195
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 9 cut(s) 68, 398, 512, 532, 542, 755, 1003, 1013, 1301
HpyF10VI GCNNNNNNNGC 5 cut(s) 155, 851, 1000, 1055, 1307
HpyF3I CTNAG 5 cut(s) 879, 995, 1127, 1245, 1269
HpySE526I ACGT 1 cut(s) 270
HspAI GCGC 1 cut(s) 1310
Kzo9I GATC 3 cut(s) 96, 435, 699
LmnI GCTCC 3 cut(s) 706, 1206, 1233
Lsp1109I GCAGC 4 cut(s) 410, 775, 987, 1321
LweI GCATC 6 cut(s) 167, 604, 873, 1012, 1036, 1188
MaeI CTAG 1 cut(s) 80
MaeII ACGT 1 cut(s) 270
MalI GATC 3 cut(s) 98, 437, 701
MboI GATC 3 cut(s) 96, 435, 699
MhlI GDGCHC 3 cut(s) 359, 683, 856
MluCI AATT 6 cut(s) 117, 128, 624, 838, 944, 1347
MlyI GAGTC 2 cut(s) 282, 1105
Mph1103I ATGCAT 2 cut(s) 544, 1303
MroXI GAANNNNTTC 1 cut(s) 50
MseI TTAA 4 cut(s) 191, 276, 630, 1020
MslI CAYNNNNRTG 4 cut(s) 25, 173, 537, 1193
MspA1I CMGCKG 2 cut(s) 294, 779
MspCI CTTAAG 1 cut(s) 190
MspI CCGG 1 cut(s) 1166
MspR9I CCNGG 3 cut(s) 483, 1166, 1167
Mva1269I GAATGC 2 cut(s) 532, 542
MvaI CCWGG 1 cut(s) 483
MwoI GCNNNNNNNGC 5 cut(s) 155, 851, 1000, 1055, 1307
NciI CCSGG 2 cut(s) 1166, 1167
NcoI CCATGG 1 cut(s) 566
NdeII GATC 3 cut(s) 96, 435, 699
NlaIV GGNNCC 2 cut(s) 645, 708
NsbI TGCGCA 1 cut(s) 1311
NsiI ATGCAT 2 cut(s) 544, 1303
NspI RCATGY 5 cut(s) 72, 506, 934, 1240, 1316
PaeI GCATGC 2 cut(s) 1240, 1316
PciI ACATGT 1 cut(s) 502
PctI GAATGC 2 cut(s) 532, 542
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 2 cut(s) 924, 989
PkrI GCNGC 4 cut(s) 400, 765, 1002, 1336
PleI GAGTC 2 cut(s) 282, 1104
PpsI GAGTC 2 cut(s) 282, 1104
PpuMI RGGWCCY 2 cut(s) 643, 721
PscI ACATGT 1 cut(s) 502
PshAI GACNNNNGTC 1 cut(s) 1110
Psp5II RGGWCCY 2 cut(s) 643, 721
Psp6I CCWGG 1 cut(s) 481
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 2 cut(s) 645, 708
PspPI GGNCC 3 cut(s) 479, 643, 721
PspPPI RGGWCCY 2 cut(s) 643, 721
PvuII CAGCTG 1 cut(s) 779
RsaI GTAC 7 cut(s) 75, 203, 222, 452, 666, 1174, 1343
RsaNI GTAC 7 cut(s) 74, 202, 221, 451, 665, 1173, 1342
RseI CAYNNNNRTG 4 cut(s) 25, 173, 537, 1193
SaqAI TTAA 4 cut(s) 191, 276, 630, 1020
SatI GCNGC 4 cut(s) 399, 764, 1001, 1335
Sau3AI GATC 3 cut(s) 96, 435, 699
Sau96I GGNCC 3 cut(s) 479, 643, 721
SchI GAGTC 2 cut(s) 282, 1105
ScrFI CCNGG 3 cut(s) 483, 1166, 1167
SduI GDGCHC 3 cut(s) 359, 683, 856
SfaNI GCATC 6 cut(s) 167, 604, 873, 1012, 1036, 1188
SfcI CTRYAG 3 cut(s) 346, 711, 1050
SinI GGWCC 2 cut(s) 643, 721
SmaI CCCGGG 1 cut(s) 1167
SmiMI CAYNNNNRTG 4 cut(s) 25, 173, 537, 1193
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
SphI GCATGC 2 cut(s) 1240, 1316
Sse9I AATT 6 cut(s) 117, 128, 624, 838, 944, 1347
SsiI CCGC 1 cut(s) 292
SspMI CTAG 1 cut(s) 80
StyD4I CCNGG 3 cut(s) 481, 1164, 1165
StyI CCWWGG 3 cut(s) 566, 1108, 1204
TaaI ACNGT 5 cut(s) 51, 214, 350, 823, 1195
TaiI ACGT 1 cut(s) 273
TaqI TCGA 2 cut(s) 303, 729
TasI AATT 6 cut(s) 117, 128, 624, 838, 944, 1347
TfiI GAWTC 2 cut(s) 924, 989
Tru1I TTAA 4 cut(s) 191, 276, 630, 1020
Tru9I TTAA 4 cut(s) 191, 276, 630, 1020
TscAI CASTG 6 cut(s) 64, 242, 359, 808, 828, 1273
TseI GCWGC 4 cut(s) 398, 763, 1000, 1334
TspDTI ATGAA 8 cut(s) 80, 263, 333, 727, 938, 1057, 1123, 1128
TspMI CCCGGG 1 cut(s) 1165
TspRI CASTG 6 cut(s) 64, 242, 359, 808, 828, 1273
Vha464I CTTAAG 1 cut(s) 190
VpaK11BI GGWCC 2 cut(s) 643, 721
XapI RAATTY 2 cut(s) 128, 944
XceI RCATGY 5 cut(s) 72, 506, 934, 1240, 1316
XcmI CCANNNNNNNNNTGG 1 cut(s) 24
XmaI CCCGGG 1 cut(s) 1165
XmnI GAANNNNTTC 1 cut(s) 50
XspI CTAG 1 cut(s) 80
Zsp2I ATGCAT 2 cut(s) 544, 1303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.