RLG00000013477

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000582
Physical Location & Seq
Reverse (-)
32127757 .. 32144001
16245 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013477

Sequence Viewer

Length: 8136 bp
ATGTACGGACGTCCTTCTCGCTCCTCCGGCGGCGCATGGGGTCAGCCACCGCCGCTTGCACAGCCTCTAAACCCTAATTTCTCACTCCAGAACCCCAACACTCCATACATCTACCCTATAAACCATGCCTTTACGCCCCACCATGCCTACCGAAACTTCTCCCCCAACAATCTCCCACCGCAAAACCCTAGCTTCGTTCCCCAGCAGTTCTCGAATTCGCCGTTTCGGCCTCCGCCGCCTCAGGGTAACTCCAAAGAGCTGCTGGAGAAAGTCGACCGCGCCGTGGCGAAGGCTCGGTCGGAACTTGTTGCCGCCCGCGACAGCGTCTCGGCGTGGAAGGTCTCGCAGTCGGCGCTTCTGATGCTCCAGATTGATGGCTGGAGCTCTCTGGGGTTTCAGATGCAGCAGGTGCCGTCTCTACACCGCCTCATGTTCACTGAAGGCAAGATAAATGCATTTATTCAGTGTTTTGTTGCTGTTCGGAGAATTTCTTCATTATATGATCTGGAAGTAGCAGTGTGCAAGAATGAGGGCATCGAGAAGTTTGAAGAGCTAGGGTTGGGCCCTTTGGTGCGACACCCACTTGTGTTGCATTATTACTCAGTGAAGCCTGATACTAATGAAGTTTATAAGATTACTAGCGATGAGATAATATCTTTACTCTCTGAGTACATGGATACCTGCAAGAATAAAGAAATTAAGATTGAAGAATTTTTAGATTTCATTGTAAAGAAGCGATCAGTTGCAAGCAAGGAAGATCTTGGAATACGAATTCAGAGCATGGGGATGCATATTTCTGCTATCCGGGATGTGAAGAAAACTGAACAGGTTCTTAAGCAAACATCTAAGAAAGGTAACAATAAGCGTTACTTCTCATTGAAAAGGCAGCTAGACGAACGTTTCAACGACATTTCTCAGCGTGTTGAATCATTTTCCTCCATACAGAAGTTTTGTGGCAAGCACATTAGGTTTGATTCTTCAAAAGACTCGGAGGCTGACAGTAGTGATGATGATTCATATGAAGACGATGATGAAGTTAATGACCATTTGACAGGCAATCAGGTTAACTTATTATCAAAATCTGTTACAACTTCTGATCGAGCTAGCAGATGTCCTTACCCTTCTGAATTAGAAGAGAAGAAACGGCTAGGATTAAACCAGCATTCCCCAGCTAGTGGCTCCCAAAAGCTTGGTGAGAGTAATCAGTCAGCTAAAAAGAAAAGAAACTCTGAAGATGTAAACAGTGCAATCTCAGTGCCCACCAAATTGCGTAAGAGAGATAAGACAGGAGAAGATGCTCCTCGAACAGGGCATGGCTGGAAAACCAATGAGGTTAGCAATTCGGATGAAAATGATCTCTCAATTACTGATAGCTGTTTAAAGACCTTCATTACAACTTGGAAGGAGGCATGTCGGCAGAAAACTGTGGCTGAGGTACTTGATAGATTACTGCAGCTTAATAGCATAGAAGCTCAGAAGAAAAAGGAAATCAAGTCAATGTTTTCTTTGGATCCATTAATTGGATTGTTAAATGTTGCTGTCTCATCTATCAAATCCGGATTGTGGGATAACATGTATGATACATTCCAAACTGTTGGTCAGTTAACTGACAGTCTTCCGGATAACTGTCCTGAATATGTGAACATAGATGTTGAACCAAGTATTAAAGATGTGAAAAGTACCAAGGATGCACCAGTCATTCCTGAACACGCTGTAGACCACAGGCAGAGTGTTTCTGTTGAGGACATAATCAGGAAACTTGCAATGTATTTTGAGATTGATCGAGGTGTACGTGGCAATAGTAAATCACTTCAGGAGAAAATATGTACCTTCTTGACAAAGCTTTACAATTGTGAACTGTGGTTAGTGGAAGAATTTTCTGTCAAGGAATTTAGATCTCTTGGTCATGGAGAGTTTTTAAGGTTCTTAGAAAATTATGCTGGTCTACTTCCACAAGACCTGTGCAAGTTCCTGACTGATGATGTAATTGAGAAGTGCCCTTTGGAAGTTTGCATGCTCCAGCACCATTTGGTTGTTTTACTATCTCAAGCTTTAAATACTTTATGGGAGGATGAAAATATCACAAAACAGGACATTCTGTTGCTGCTTAGGAAGCAATTCCCATTGGTTAGTTTCAAAACTATTGAAAATGGTTCAGTAGAAGATTTTTTAAGCATAGTAGGAAAGCATAAAAATGCTGTGATTTCCAAATGTGTTCTGTTCTCAATGGCATTACGTGGCACTAGCTATGCGATAGACTCATCAAGACATTATGAGAACGTCCTATTGAAAAGCATGTCATTGAGTTCTGACAGTGGCCAGAAAGCAAAAACCCATGTTACATCCAAGGATGCAATTAAAGTCTTAGCTAGGGCACCAATGATGTCTGACTTAAACTTATGGTCACACTGGGACCTTTTGTTTGCTCCTTCACTTGGTCCTCTTGTACCATGGTTATTAAATGAAGTTAACACAGATGAATTGTTGTGTTTGGTGACCAAAGATGGAAAAGTCTTTCGGTTAGACCAATCAGCTACTGTAGATTCCTTCGTAGAAGCTGCCCTTCAAGGATCCTCTTTCCAAACAGCAGTGAAATTGTTATCTCTATTTTCACTAGTTGGGGGAGAAAAACATGTGCCTGTGCCTCTTTTGAAAATCCACATGCAACATGCATTTGAAGTCATTTTGAAAAATTTTGTAGATGACATGGAAGTACATGACAATAAGAATTCTCTTAATTATGGAAAAGCGTTGTCTGGACAACAAATGATTGGTGAAATTGCAGCTGGTAAACTATCACACAGAGACTTACACAAGACAGATATTGGAGAACCCATAATATCAAGATTTGTTCTTGAATGTCTTGGGTATTTACCTGCAGAATTTCGTGGTTTTGCTGCTGATGTATTGCTTTCGGGAATGCAGTCTGTTGTCAAACATGCTGCTTCAGCCATATTGAGTGAGTGCAGCCAATCAGAGCAACGTATCATGCTTCATGAAGTTGGTTTGTCTCTTGGTATAGTTGAGTGGATTAATGATTACTACACATTTGTTTCCAATCGTACGGCTCAGTCGTTCATATCTGGGGCCTCATGTTCCAATGCTGTTGGATATGAAATGGGGTCAGGTTCAAAGCCCTTGCATGATGTTTCAGATAAGTTTTTGACTTCTGGAGGGAGCATAGCTGGATCTGTTGGGGAAGATGTGCGGGAAGTTGGATGTACTGGTGTCTCTCTGAAAATTGGTGGTGTGGAAATCTCTGATGAGAGAGCTGGCAGTGGTTACACACAACATTCTGCCAAAATTAATGAATATGAAGATGCATCCCAGGTGATTGAGTCAATCAGGAGAGATGAATTTGGTCTTCATTCAAGCCAAACGACCTCTGAAGGTATCATGTTGAAGAAGCATCATGCTCGCTTAGGGAGAGCTCTACATTGTCTTTCACAGGAATTGTATTCTCAGGATTCACATTTTCTTCTTGAGCTGGTTCAAAATGCAGATGATAATACATACCTGACATATGTAGAACCAACTTTAACATTCATTCTTCAAGACTCAGGTATTATTGTTTTAAATAATGAGCAAGGCTTCTCTGCCGAGAACATTAGAGCACTTTGTGATGTTGGAAGTTCAACAAAGAAAGGATCTAATGCTGGCTATATTGGGCGGAAAGGCATTGGTTTCAAATCTGTGTTTCGGGTCACAGATGCTCCAGAAATTCATTCCAATGGATTCCATATCAAGTTTGATATAAGTCAGGGTCAGATTGGTTTTCTTCTGCCAACAGTTGTACCTCCTTGCAACATTGACATGTTAAGTAGGCTGACTTCTAGTGACAGTGATCAACAGGACAGTAACTTCTGGAACACTTGTATTGTTCTTCCTTTCAGATCGAAGTTTTCGGATGGATCTGTCATGAAAAGCATTATAAATATGTTTTCAGATCTTCATCCATCTTTATTACTCTTCCTTCACCGCCTCCAATGTATAAAGTTTAGAAACTTGCTTGATAATTCACTGACCATCATGAGAAAAGAAACTGTGGGAGATGGTATGGTAAAGGTTTCACATGGGAAAGAGAAAATGACATGGTTCTTAGTATCTCAGAAATTGCAAGCGGATTTTATTCGTAGTGATGTACAAACAACAGAAATCTCCATAGCATTTACATTGAAGGAATTAGATAATGGTGATTATGGACCAGATCTAGGGCAACAGCCTGCTTTTGCATTTCTTCCTCTAAGAACCTATGGCCTGAAGTTTATTCTTCAGGGCGATTTTGTTCTTCCTTCATCTAGAGAGGAAGTGGATGGAGATAGTCCCTGGAACCAGTGGCTATTATCAGAATTTCCTGGTTTATTTGTCAATGCTGAGAGGTCTTTTTGTTCTCTTCCCTGCTTTAGAGAGAACCCTGGGAGAGCAGTGGCAGCTTATATGTCATTTGTTCCACTTGTTGGGGAAGTGCATGGGTTTTTTTCTTCTCTTCCTCGATTAATCATTTCTAAATTACGGATGTCAAATTGCTTACTCCTGGAAGGAGGAAATAACGAGTGGGTTCCCCCTTGCAAGGTCCTAAGAGGTTGGAATGAGCAGGCCCGATTGCTTCTGCCTGATAGTTTACTTCGGGAGCATCTTGGTCTTGGGTTGTTGGATAATAATATAGTTCTGCCTGATTCACTCGCAAGAGCACTCGGCATTGCAGACTATGGACCCAAAGTTCTGCTTCAAGTTATGGACTCCTTATGTCGTTTGCAAAATGGCCTCACATCAATGGGACTGGGTTGGTTGACCTCTTGGCTAAGTGAACTGTATGCAATGTCATTCAATGCTTCTGTGGAAACATCATTTGACTCTGGACTTGGAATGGATTTGATAGAAGAACTCCGAAAAATTCCATTCATTCCTCTTTCAGATGGTACATATGGTGCAGTAGACAAAGACCCAATTTGGTTACATTTTGATGCCTTGAGCACTGGGTTTGAGGGTCAGCATGGACTTGAGTCTTTTCCTAACTTGTTTGCTAATCTTCGTATCGTAAGCCCTGCCTTCCTTTTGACATCATGTGTAGATATGTCATCCATGGATGTGACTACAATTGACAAACAAATACGTATGCTTCGTAGAATTGGTGTCCAGCAGTTGTCCGCGCATGAAATTGTCAAGGTGCACATCTTGCCAGCTATATCTGATAACAGAAATGCAGCTGGGGATAAGAATTTGATGACCGAATATCTCTGCTTTGTAATGGTTCACCTACAGTCGACCTGCCCCGATTGTCATGGTGAAAACGAATACATAATGTCAGAATTACGAAATAAAGCTTATATACTAACAAATCATGGCTTTAAACGACCTGCTGAGATATCTATTCATTTCAGTAAGGAATATGGAAATCCTATCGACATAAATAAGTTGATAAATATGGTGGATATGATGTGGCATGAGGTTGACATCTCCTATTTGAAGCATCCAGTTACAAAGTCACTCCAATGTGGACTAACGAAGTGGAGGGAATTTTTCCAGAAAATTGGCATTGTGGATTTCGTGAAAGTAGTTCACATTGAAAAAGGATTTAATGATACATGTAAGGACTTGGTTTCTCTTGGATCAAATGTCACAGATTGGGAGTCTCCTGAATTGGTCAGTTTATTGTCCCTGTTGACCAGAACTGGCAACAAAAAAGGCTGTGAATATCTTTTACAGGTGCTTGATAGTTTATGGGATGAATGCTATCTTGAAAAAGCTACAGGCTACTGCGCTTCTAAAGATGTGGTGGAGAAAAAGCCTTTTAAATCTTCATTTATAAGCAGCATCTGTGATGCACAATGGGTAGTATCAACAATGGATGATGCACTTCACTATCCTAGAGATTTATACCACGATTGTGATGCAGTGCGCTCGGTTCTTGGTACATCTGCTCCATTTTCTGTTCCAAAGATAGGGAGTGGAAATTTTGTAAGTGCTATGGGGTTCAAGACATTAGTTTCTCTTGACGATGGTCTAGAGGTATTGAAACTATGGAGGTGTGATAACCCATTCAGGGCCAGCATAGTGCAAATGTTCAAATTTTACACATTAATCTGGAACGAAATGGCCGCTTCGAAGCCGAGAATTTTAGAGGAGTTCCATTCCAAACCTTCTATTTTTGTTCCATACGCATCTAGCTCAAGGCATGAGGATGTGGTGTCTGGTACATTTTTGTCCCCTGAGGAAGTATATTGGTATGATTCGACTTCCTTCATGGACCAAATCAAGCAGATACATCCTCAGTGCAGCCCAACAGGTGTTACTCATGGCCCCTTGAATAAGACATTGTGCAACTTTTATCCTGGCCTTCATGACTTCTTTGTTGATGGATGTGGAGTACCTGAGACCCCTCCTCTCCGTAGCTACCTACAGATTTTGCTGCATTTATCAAAGGTTGCTCTGCCTTCACAAGCAGCTAATGCCGTTTTTCAAGTCTTTCTAAAGTGGACTGATGGACTGAAATCAGGAATGAGCCCTGAGGATATTGTTTACATTAGAGATTCTCTTAAGAAGATGGAATGCATGGTGCTTCCTACTGTACATGATAAGTGGGTTTCTTTGCATCCATCCTTCGGTCTTGTATGCTGGTGTGATGAGAAGAAATTAAGCAAGCAGTTTAAGCATTTGGATGGTATTGATTTTTTATACTTCGGTCAATTGACCAAGGACGATGAAGAGATACTACGTACGAAAGTGTCGAACCTCATGCAAACTTTAGGGATTCCTGCTCTTTCACAGGTTGTGACTCGTGAGGCAATATATTATGGCCTGCAAGACAGTAGCGATGAAGCTGCATTGGTAAATTCAGCTCTTCCATATGCACAGCGCTACTTGCATAGTCTACACCCAGATAAATATTCTCAACTCAAGCAGTCTGGATTTGATATCCTAAATTGTTTGCAAGTAGTAGTTGTTGAAGAGCTGTACTATCGAAATGTTATCAAAGTTGCTGGAAGTGAATCTAAGAAGCGGGTTGCATGTAGTTGTCTTCTGAAGGGTAGCATGTTGTATACAACCCGAGAATCAGATTCTCACACATTATTTATGGAACTTTCTCGTTTGTTTTTTAATGGAAATCCTGAACTGCACCTGGCGAATTTCCTTCATATCATCACAACCATGGAAAAATCAGGTTCGAACGAGGAGCAGATAGAGTTGTTTATCCTCAATAGCCAAAAGGTGCCAAAGCTTCCTGATGGGGAATGTGTTTGGTCCTTTTCTTCTTTGCACTCATTGACTGTGGATGATGAATTACTCCAGACAAGTAATACTTCAATGGAAGTAAATGAACAAAACAGTTGGAAACCCAAAAGGAAAGCAGAAAACTGGCCGCCTGTTGATTGGAAAACTGCACCAGGGTTCGCTTATGCTCGTGCACATGGTTTTAAGACACAACCACCAGTTTTACAGCCCTATGGTGCCTTACAAAATAAGATGGATGATGATTCTGAAGGAATTGTTGGACAAATTGATAATTTGGCTCACAGTTCTGTGGATGCTAATTGGACGTTGGAAGATTATTCAGCAACTGTGTCTTTAGCTTTGCCAGACAATAATGATTTGCTAGAACATCGTGGGGAGCATTTCAATGACTCTGACTTTGCATCACAAATTGAATTTGATCCCATCAATCTCGGTCTTGTTTCCGACCCTCCAGAGTTGGGCTCATCCAATGTTGGCAAGAGAGAACAGCTTAGATATGGCACACCCAATGCTTCACAAGCAATTATGACCGGGAGACTTGGAGAGCTTGTTGCTTTTAAATATTTTGTTGAGAAAGGTGGCAAGTCAGCAGTCAAGTGGGTTAATGAGCACAATGAAACAGGGCTACCCTATGACATAGTGCTGGGGGAGAACAATAAGGAGTACATTGAAGTGAAAGCAACGAAATCTGCAAGAAAAGATTGGTTTGAAATATCAATGAATGAGTTGCAATTTGCAGTTGACAAAGGTGAAGCTTTTAGCATAGCTCATGTCATCTTATTAGATAATAATGTTGCAAAGGTCAGAGTGTACAACAATCTGGCAAAGTTATGCCAGCTTCGCCAACTGAAGTTAGCTGTATTGGTGCCTGTGCAGCAGAAGGAATTCGCCATTGTATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3883

Protein Analysis

2712

Amino Acids

303.86

Weight (kDa)

5.78

Isoelectric Point (pI)

43.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SACS PF25794 1153 - 1338 2.1e-09 Sacsin domain
NOV_C PF13020 2592 - 2675 5.9e-19 Protein NO VEIN, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08300 AT1G08300 AT1G08300 AT4G13750
fragaria_vesca FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_4g13620 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660
malus_domestica MD04G1012800.v1.1 MD04G1012900.v1.1 MD04G1013100.v1.1 MD04G1013300.v1.1
prunus_persica Prupe.1G159000_v2.0.a1 Prupe.1G159100_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G358100_v2.0.a1
pyrus_communis pycom04g01020 pycom04g01030
rosa_chinensis RchiOBHm_Chr4g0414341 RchiOBHm_Chr4g0414351 RchiOBHm_Chr6g0275261 RchiOBHm_Chr7g0213881 RchiOBHm_Chr7g0213891
rosa_laevigata RLG00000008153 RLG00000008155 RLG00000013477
rosa_multiflora Rmu_co8510163.1_g000001 Rmu_sc0004087.1_g000027 Rmu_sc0005196.1_g000014 Rmu_sc0005558.1_g000005 Rmu_sc0005558.1_g000006 Rmu_sc0008100.1_g000005 Rmu_sc0008560.1_g000005
rosa_roxburghii Rroxscaffold_5G00358210 Rroxscaffold_5G00358220 Rroxscaffold_7G00187920 Rroxscaffold_7G00187930 Rroxscaffold_7G00193450
rosa_rugosa Rorug04G0127100 Rorug04G0127200 Rorug04G0127300 Rorug04G0127400 Rorug06G0090600
rosa_samantha Rh4AG185200 Rh4AG185300 Rh4AG185500 Rh4BG184700 Rh4BG184800 Rh4CG198000 Rh4CG198100 Rh4DG182400 Rh4DG182600 Rh6AG204100 Rh6BG207000 Rh6CG209600 Rh6DG200000 Rh7AG277400 Rh7CG296400 Rh7CG296500
rosa_wichuraiana Rw4G015850 Rw4G015860 Rw6G017730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 630, 3932, 5807
AarI CACCTGC 1 cut(s) 397
AatII GACGTC 1 cut(s) 13
Acc36I ACCTGC 5 cut(s) 397, 689, 2884, 5276, 5365
AccB1I GGYRCC 5 cut(s) 409, 2374, 7210, 7448, 8098
AccB7I CCANNNNNTGG 3 cut(s) 1175, 1520, 4457
AccI GTMKAC 7 cut(s) 273, 1716, 1945, 4935, 5264, 6871, 7040
AccII CGCG 3 cut(s) 279, 318, 5150
AccIII TCCGGA 2 cut(s) 1556, 1618
AclI AACGTT 1 cut(s) 898
AclWI GGATC 9 cut(s) 1505, 1518, 2565, 2578, 3196, 3655, 3919, 5617, 7646
AcoI YGGCCR 3 cut(s) 2317, 6096, 7358
AcyI GRCGYC 1 cut(s) 10
AdeI CACNNNGTG 1 cut(s) 3620
AfeI AGCGCT 1 cut(s) 6857
AflII CTTAAG 2 cut(s) 833, 6536
AflIII ACRYGT 4 cut(s) 1572, 2632, 3813, 5585
AhlI ACTAGT 1 cut(s) 2614
AjnI CCWGG 8 cut(s) 3327, 4325, 4354, 4414, 4533, 6331, 7119, 7384
AjuI GAANNNNNNNTTGG 4 cut(s) 1985, 2017, 7473, 7505
AleI CACNNNNGTG 1 cut(s) 5886
AloI GAACNNNNNNTCC 2 cut(s) 4704, 4736
Alw21I GWGCWC 8 cut(s) 386, 3433, 3616, 4693, 4976, 5172, 7408, 7845
Alw44I GTGCAC 2 cut(s) 5168, 7404
AlwI GGATC 9 cut(s) 1505, 1518, 2565, 2578, 3196, 3655, 3919, 5617, 7646
AlwNI CAGNNNCTG 3 cut(s) 2537, 5817, 7559
Ama87I CYCGRG 1 cut(s) 7047
Aor13HI TCCGGA 2 cut(s) 1556, 1618
Aor51HI AGCGCT 1 cut(s) 6857
ApaI GGGCCC 1 cut(s) 566
ApaLI GTGCAC 2 cut(s) 5168, 7404
ArsI GACNNNNNNTTYG 8 cut(s) 281, 313, 1582, 1614, 2405, 2437, 7613, 7645
AseI ATTAAT 5 cut(s) 1517, 3033, 3306, 4496, 6080
Asp700I GAANNNNTTC 4 cut(s) 490, 828, 2117, 8117
AspLEI GCGC 7 cut(s) 35, 281, 355, 5152, 5762, 5901, 6858
AsuC2I CCSGG 2 cut(s) 806, 7765
AsuHPI GGTGA 9 cut(s) 1205, 2506, 2786, 3343, 3968, 4205, 5246, 5297, 7994
AsuII TTCGAA 2 cut(s) 6104, 7166
AsuNHI GCTAGC 1 cut(s) 1103
AvaI CYCGRG 1 cut(s) 7047
AvaII GGWCC 7 cut(s) 2413, 2438, 4202, 4573, 4712, 6247, 7242
AxyI CCTNAGG 3 cut(s) 240, 6210, 6507
BaeGI GKGCMC 6 cut(s) 566, 1260, 2000, 2377, 5172, 7408
BaeI ACNNNNGTAYC 2 cut(s) 3777, 3810
BalI TGGCCA 1 cut(s) 2319
BamHI GGATCC 2 cut(s) 1510, 2570
BanI GGYRCC 5 cut(s) 409, 2374, 7210, 7448, 8098
BanII GRGCYC 5 cut(s) 386, 566, 3433, 6506, 7697
BarI GAAGNNNNNNTAC 4 cut(s) 3814, 3846, 6696, 6728
BauI CACGAG 2 cut(s) 6777, 7401
BbsI GAAGAC 4 cut(s) 1029, 1607, 3356, 7010
Bbv12I GWGCWC 8 cut(s) 386, 3433, 3616, 4693, 4976, 5172, 7408, 7845
BbvCI CCTCAGC 1 cut(s) 1431
BceAI ACGGC 6 cut(s) 205, 266, 397, 1160, 3081, 6437
BciT130I CCWGG 8 cut(s) 3329, 4327, 4356, 4416, 4535, 6333, 7121, 7386
BciVI GTATCC 1 cut(s) 670
BclI TGATCA 1 cut(s) 3844
BcnI CCSGG 2 cut(s) 806, 7765
BcuI ACTAGT 1 cut(s) 2614
BfmI CTRYAG 7 cut(s) 1451, 1713, 2538, 2877, 5258, 5748, 6398
BfoI RGCGCY 2 cut(s) 356, 6859
BfrI CTTAAG 2 cut(s) 833, 6536
BfuAI ACCTGC 5 cut(s) 397, 689, 2884, 5276, 5365
BfuI GTATCC 1 cut(s) 670
BglI GCCNNNNNGGC 1 cut(s) 226
BglII AGATCT 4 cut(s) 757, 1895, 3946, 4207
Bme18I GGWCC 7 cut(s) 2413, 2438, 4202, 4573, 4712, 6247, 7242
BmeT110I CYCGRG 1 cut(s) 7047
BmrI ACTGGG 3 cut(s) 2419, 4790, 4986
BmtI GCTAGC 1 cut(s) 1107
BmuI ACTGGG 3 cut(s) 2419, 4790, 4986
BoxI GACNNNNGTC 2 cut(s) 5002, 6000
BpiI GAAGAC 4 cut(s) 1029, 1607, 3356, 7010
BplI GAGNNNNNCTC 2 cut(s) 7679, 7711
BpmI CTGGAG 9 cut(s) 71, 284, 350, 400, 2003, 3192, 3699, 7271, 7668
Bpu10I CCTNAGC 3 cut(s) 1431, 2108, 3421
Bpu14I TTCGAA 2 cut(s) 6104, 7166
BpuEI CTTGAG 6 cut(s) 2031, 3503, 4990, 5021, 6154, 6881
BpuMI CCSGG 2 cut(s) 806, 7765
BsaAI YACGTR 4 cut(s) 1793, 2237, 5114, 6716
BsaBI GATNNNNATC 1 cut(s) 3951
BsaHI GRCGYC 1 cut(s) 10
BsaI GGTCTC 2 cut(s) 346, 6368
BsaWI WCCGGW 2 cut(s) 1556, 1618
BsaXI ACNNNNNCTCC 6 cut(s) 3697, 3727, 5905, 5935, 7767, 7797
Bse21I CCTNAGG 3 cut(s) 240, 6210, 6507
Bse3DI GCAATG 3 cut(s) 1770, 4698, 4824
Bse8I GATNNNNATC 1 cut(s) 3951
BseAI TCCGGA 2 cut(s) 1556, 1618
BseBI CCWGG 8 cut(s) 3329, 4327, 4356, 4416, 4535, 6333, 7121, 7386
BseJI GATNNNNATC 1 cut(s) 3951
BseMI GCAATG 3 cut(s) 1770, 4698, 4824
BseRI GAGGAG 5 cut(s) 13, 1290, 6137, 6372, 7187
BseSI GKGCMC 6 cut(s) 566, 1260, 2000, 2377, 5172, 7408
BseYI CCCAGC 4 cut(s) 201, 1168, 5207, 7876
BsgI GTGCAG 6 cut(s) 2986, 4950, 6295, 7100, 7365, 8126
Bsh1236I CGCG 3 cut(s) 279, 318, 5150
Bsh1285I CGRYCG 2 cut(s) 277, 299
BshNI GGYRCC 5 cut(s) 409, 2374, 7210, 7448, 8098
BsiEI CGRYCG 2 cut(s) 277, 299
BsiHKAI GWGCWC 8 cut(s) 386, 3433, 3616, 4693, 4976, 5172, 7408, 7845
BsiHKCI CYCGRG 1 cut(s) 7047
BsiSI CCGG 5 cut(s) 27, 805, 1557, 1619, 7764
BsiWI CGTACG 2 cut(s) 3062, 6716
BslFI GGGAC 5 cut(s) 2426, 4308, 4791, 5641, 6190
BsmBI CGTCTC 2 cut(s) 331, 420
BsmFI GGGAC 5 cut(s) 2426, 4308, 4791, 5641, 6190
BsmI GAATGC 4 cut(s) 1162, 2925, 5735, 6554
Bso31I GGTCTC 2 cut(s) 346, 6368
BsoBI CYCGRG 1 cut(s) 7047
Bsp119I TTCGAA 2 cut(s) 6104, 7166
Bsp120I GGGCCC 1 cut(s) 562
Bsp13I TCCGGA 2 cut(s) 1556, 1618
Bsp1407I TGTACA 3 cut(s) 4141, 6568, 8043
Bsp19I CCATGG 3 cut(s) 2450, 5082, 7149
BspEI TCCGGA 2 cut(s) 1556, 1618
BspFNI CGCG 3 cut(s) 279, 318, 5150
BspHI TCATGA 4 cut(s) 2995, 3918, 4029, 6340
BspMAI CTGCAG 2 cut(s) 1455, 2881
BspMI ACCTGC 5 cut(s) 397, 689, 2884, 5276, 5365
BspOI GCTAGC 1 cut(s) 1107
BspPI GGATC 9 cut(s) 1505, 1518, 2565, 2578, 3196, 3655, 3919, 5617, 7646
BspQI GCTCTTC 3 cut(s) 543, 6846, 6942
BspT104I TTCGAA 2 cut(s) 6104, 7166
BspT107I GGYRCC 5 cut(s) 409, 2374, 7210, 7448, 8098
BspTI CTTAAG 2 cut(s) 833, 6536
BspTNI GGTCTC 2 cut(s) 346, 6368
BsrDI GCAATG 3 cut(s) 1770, 4698, 4824
BsrGI TGTACA 3 cut(s) 4141, 6568, 8043
BssNAI GTATAC 1 cut(s) 7041
BssNI GRCGYC 1 cut(s) 10
BssSI CACGAG 2 cut(s) 6777, 7401
BssT1I CCWWGG 6 cut(s) 1683, 2346, 2450, 5082, 6693, 7149
Bst1107I GTATAC 1 cut(s) 7041
Bst2BI CACGAG 2 cut(s) 6777, 7401
Bst2UI CCWGG 8 cut(s) 3329, 4327, 4356, 4416, 4535, 6333, 7121, 7386
Bst6I CTCTTC 8 cut(s) 543, 1128, 3974, 4398, 4491, 6699, 6846, 6942
BstACI GRCGYC 1 cut(s) 10
BstAFI CTTAAG 2 cut(s) 833, 6536
BstAPI GCANNNNNTGC 3 cut(s) 409, 5176, 6449
BstAUI TGTACA 3 cut(s) 4141, 6568, 8043
BstBAI YACGTR 4 cut(s) 1793, 2237, 5114, 6716
BstBI TTCGAA 2 cut(s) 6104, 7166
BstDSI CCRYGG 4 cut(s) 282, 2450, 5082, 7149
BstEII GGTNACC 1 cut(s) 2494
BstENI CCTNNNNNAGG 1 cut(s) 1305
BstFNI CGCG 3 cut(s) 279, 318, 5150
BstH2I RGCGCY 2 cut(s) 356, 6859
BstHHI GCGC 7 cut(s) 35, 281, 355, 5152, 5762, 5901, 6858
BstMCI CGRYCG 2 cut(s) 277, 299
BstNI CCWGG 8 cut(s) 3329, 4327, 4356, 4416, 4535, 6333, 7121, 7386
BstPAI GACNNNNGTC 2 cut(s) 5002, 6000
BstPI GGTNACC 1 cut(s) 2494
BstSFI CTRYAG 7 cut(s) 1451, 1713, 2538, 2877, 5258, 5748, 6398
BstSLI GKGCMC 6 cut(s) 566, 1260, 2000, 2377, 5172, 7408
BstSNI TACGTA 2 cut(s) 5114, 6716
BstUI CGCG 3 cut(s) 279, 318, 5150
BstV2I GAAGAC 4 cut(s) 1029, 1607, 3356, 7010
BstX2I RGATCY 9 cut(s) 757, 1510, 1895, 2570, 3188, 3647, 3911, 3946, 4207
BstXI CCANNNNNNTGG 4 cut(s) 374, 1190, 1595, 5531
BstYI RGATCY 9 cut(s) 757, 1510, 1895, 2570, 3188, 3647, 3911, 3946, 4207
BstZ17I GTATAC 1 cut(s) 7041
Bsu36I CCTNAGG 3 cut(s) 240, 6210, 6507
BsuI GTATCC 1 cut(s) 670
BtgI CCRYGG 4 cut(s) 282, 2450, 5082, 7149
BtgZI GCGATG 2 cut(s) 657, 6828
BtsI GCAGTG 5 cut(s) 522, 2595, 3283, 4431, 5901
BveI ACCTGC 5 cut(s) 397, 689, 2884, 5276, 5365
CaiI CAGNNNCTG 3 cut(s) 2537, 5817, 7559
CciI TCATGA 4 cut(s) 2995, 3918, 4029, 6340
CfoI GCGC 7 cut(s) 35, 281, 355, 5152, 5762, 5901, 6858
CseI GACGC 1 cut(s) 313
CspCI CAANNNNNGTGG 2 cut(s) 570, 605
DraI TTTAAA 6 cut(s) 1380, 2055, 3576, 5350, 5794, 7792
DraIII CACNNNGTG 1 cut(s) 3620
EaeI YGGCCR 3 cut(s) 2317, 6096, 7358
Eam1104I CTCTTC 8 cut(s) 543, 1128, 3974, 4398, 4491, 6699, 6846, 6942
EarI CTCTTC 8 cut(s) 543, 1128, 3974, 4398, 4491, 6699, 6846, 6942
EciI GGCGGA 2 cut(s) 222, 3685
Ecl136II GAGCTC 2 cut(s) 384, 3431
Eco105I TACGTA 2 cut(s) 5114, 6716
Eco130I CCWWGG 6 cut(s) 1683, 2346, 2450, 5082, 6693, 7149
Eco24I GRGCYC 5 cut(s) 386, 566, 3433, 6506, 7697
Eco31I GGTCTC 2 cut(s) 346, 6368
Eco32I GATATC 2 cut(s) 5367, 6916
Eco47I GGWCC 7 cut(s) 2413, 2438, 4202, 4573, 4712, 6247, 7242
Eco47III AGCGCT 1 cut(s) 6857
Eco53kI GAGCTC 2 cut(s) 384, 3431
Eco81I CCTNAGG 3 cut(s) 240, 6210, 6507
Eco88I CYCGRG 1 cut(s) 7047
Eco91I GGTNACC 1 cut(s) 2494
EcoICRI GAGCTC 2 cut(s) 384, 3431
EcoNI CCTNNNNNAGG 1 cut(s) 1305
EcoO109I RGGNCCY 4 cut(s) 563, 2413, 3087, 4573
EcoO65I GGTNACC 1 cut(s) 2494
EcoRI GAATTC 4 cut(s) 214, 771, 2728, 8117
EcoRII CCWGG 8 cut(s) 3327, 4325, 4354, 4414, 4533, 6331, 7119, 7384
EcoRV GATATC 2 cut(s) 5367, 6916
EcoT14I CCWWGG 6 cut(s) 1683, 2346, 2450, 5082, 6693, 7149
EcoT22I ATGCAT 5 cut(s) 457, 792, 2674, 3325, 6554
EcoT38I GRGCYC 5 cut(s) 386, 566, 3433, 6506, 7697
ErhI CCWWGG 6 cut(s) 1683, 2346, 2450, 5082, 6693, 7149
Esp3I CGTCTC 2 cut(s) 331, 420
FalI AAGNNNNNCTT 8 cut(s) 854, 886, 2547, 2579, 4710, 4742, 7285, 7317
FaqI GGGAC 5 cut(s) 2426, 4308, 4791, 5641, 6190
FauI CCCGC 3 cut(s) 323, 3201, 6993
FauNDI CATATG 4 cut(s) 1018, 3523, 4924, 6847
FbaI TGATCA 1 cut(s) 3844
FblI GTMKAC 7 cut(s) 273, 1716, 1945, 4935, 5264, 6871, 7040
FriOI GRGCYC 5 cut(s) 386, 566, 3433, 6506, 7697
GlaI GCGC 7 cut(s) 34, 280, 354, 5151, 5761, 5900, 6857
GsaI CCCAGC 4 cut(s) 205, 1172, 5211, 7880
GsuI CTGGAG 9 cut(s) 71, 284, 350, 400, 2003, 3192, 3699, 7271, 7668
HaeII RGCGCY 2 cut(s) 356, 6859
HapII CCGG 5 cut(s) 27, 805, 1557, 1619, 7764
HgaI GACGC 1 cut(s) 313
HhaI GCGC 7 cut(s) 35, 281, 355, 5152, 5762, 5901, 6858
Hin1I GRCGYC 1 cut(s) 10
Hin6I GCGC 7 cut(s) 33, 279, 353, 5150, 5760, 5899, 6856
HinP1I GCGC 7 cut(s) 33, 279, 353, 5150, 5760, 5899, 6856
HincII GTYRAC 9 cut(s) 274, 1066, 1605, 2470, 4791, 5265, 5452, 5664, 7975
HindII GTYRAC 9 cut(s) 274, 1066, 1605, 2470, 4791, 5265, 5452, 5664, 7975
HindIII AAGCTT 6 cut(s) 1187, 1841, 2049, 5322, 7217, 7986
HpaI GTTAAC 3 cut(s) 1066, 1605, 2470
HpaII CCGG 5 cut(s) 27, 805, 1557, 1619, 7764
HphI GGTGA 9 cut(s) 1205, 2506, 2786, 3343, 3968, 4205, 5246, 5297, 7994
HpyCH4IV ACGT 9 cut(s) 10, 898, 1792, 2236, 2280, 2983, 5113, 6715, 7538
HpySE526I ACGT 9 cut(s) 10, 898, 1792, 2236, 2280, 2983, 5113, 6715, 7538
Hsp92I GRCGYC 1 cut(s) 10
HspAI GCGC 7 cut(s) 33, 279, 353, 5150, 5760, 5899, 6856
Kpn2I TCCGGA 2 cut(s) 1556, 1618
Ksp22I TGATCA 1 cut(s) 3844
KspAI GTTAAC 3 cut(s) 1066, 1605, 2470
LguI GCTCTTC 3 cut(s) 543, 6846, 6942
MaeII ACGT 9 cut(s) 10, 898, 1792, 2236, 2280, 2983, 5113, 6715, 7538
MfeI CAATTG 3 cut(s) 1849, 5097, 6686
MflI RGATCY 9 cut(s) 757, 1510, 1895, 2570, 3188, 3647, 3911, 3946, 4207
MlsI TGGCCA 1 cut(s) 2319
MluNI TGGCCA 1 cut(s) 2319
Mox20I TGGCCA 1 cut(s) 2319
Mph1103I ATGCAT 5 cut(s) 457, 792, 2674, 3325, 6554
MroI TCCGGA 2 cut(s) 1556, 1618
MroXI GAANNNNTTC 4 cut(s) 490, 828, 2117, 8117
MscI TGGCCA 1 cut(s) 2319
Msp20I TGGCCA 1 cut(s) 2319
MspA1I CMGCKG 2 cut(s) 2786, 5207
MspCI CTTAAG 2 cut(s) 833, 6536
MspI CCGG 5 cut(s) 27, 805, 1557, 1619, 7764
MunI CAATTG 3 cut(s) 1849, 5097, 6686
Mva1269I GAATGC 4 cut(s) 1162, 2925, 5735, 6554
MvaI CCWGG 8 cut(s) 3329, 4327, 4356, 4416, 4535, 6333, 7121, 7386
MvnI CGCG 3 cut(s) 279, 318, 5150
NciI CCSGG 2 cut(s) 806, 7765
NcoI CCATGG 3 cut(s) 2450, 5082, 7149
NdeI CATATG 4 cut(s) 1018, 3523, 4924, 6847
NheI GCTAGC 1 cut(s) 1103
NmeAIII GCCGAG 4 cut(s) 308, 3625, 4674, 6135
NmuCI GTSAC 8 cut(s) 2403, 2494, 3703, 3836, 5089, 5484, 5617, 6772
NsiI ATGCAT 5 cut(s) 457, 792, 2674, 3325, 6554
NspV TTCGAA 2 cut(s) 6104, 7166
OliI CACNNNNGTG 1 cut(s) 5886
PaeI GCATGC 1 cut(s) 2017
PagI TCATGA 4 cut(s) 2995, 3918, 4029, 6340
PaqCI CACCTGC 1 cut(s) 397
PasI CCCWGGG 1 cut(s) 4415
PciI ACATGT 4 cut(s) 1572, 2632, 3813, 5585
PciSI GCTCTTC 3 cut(s) 543, 6846, 6942
PcsI WCGNNNNNNNCGW 6 cut(s) 218, 279, 1789, 3071, 5119, 6725
PctI GAATGC 4 cut(s) 1162, 2925, 5735, 6554
PdmI GAANNNNTTC 4 cut(s) 490, 828, 2117, 8117
Pfl23II CGTACG 2 cut(s) 3062, 6716
PflFI GACNNNGTC 1 cut(s) 323
PflMI CCANNNNNTGG 3 cut(s) 1175, 1520, 4457
PfoI TCCNGGA 2 cut(s) 804, 4533
Ppu21I YACGTR 4 cut(s) 1793, 2237, 5114, 6716
PpuMI RGGWCCY 2 cut(s) 2413, 4573
PscI ACATGT 4 cut(s) 1572, 2632, 3813, 5585
PshAI GACNNNNGTC 2 cut(s) 5002, 6000
PshBI ATTAAT 5 cut(s) 1517, 3033, 3306, 4496, 6080
PsiI TTATAA 3 cut(s) 630, 3932, 5807
Psp124BI GAGCTC 2 cut(s) 386, 3433
Psp1406I AACGTT 1 cut(s) 898
Psp5II RGGWCCY 2 cut(s) 2413, 4573
Psp6I CCWGG 8 cut(s) 3327, 4325, 4354, 4414, 4533, 6331, 7119, 7384
PspEI GGTNACC 1 cut(s) 2494
PspFI CCCAGC 4 cut(s) 201, 1168, 5207, 7876
PspGI CCWGG 8 cut(s) 3327, 4325, 4354, 4414, 4533, 6331, 7119, 7384
PspLI CGTACG 2 cut(s) 3062, 6716
PspOMI GGGCCC 1 cut(s) 562
PspPPI RGGWCCY 2 cut(s) 2413, 4573
PstI CTGCAG 2 cut(s) 1455, 2881
PstNI CAGNNNCTG 3 cut(s) 2537, 5817, 7559
PsuI RGATCY 9 cut(s) 757, 1510, 1895, 2570, 3188, 3647, 3911, 3946, 4207
PsyI GACNNNGTC 1 cut(s) 323
PvuII CAGCTG 2 cut(s) 2786, 5207
SacI GAGCTC 2 cut(s) 386, 3433
SalI GTCGAC 2 cut(s) 272, 5263
SapI GCTCTTC 3 cut(s) 543, 6846, 6942
SfcI CTRYAG 7 cut(s) 1451, 1713, 2538, 2877, 5258, 5748, 6398
SfuI TTCGAA 2 cut(s) 6104, 7166
SinI GGWCC 7 cut(s) 2413, 2438, 4202, 4573, 4712, 6247, 7242
SmlI CTYRAG 8 cut(s) 833, 2046, 3482, 4969, 5000, 6169, 6536, 6896
SmoI CTYRAG 8 cut(s) 833, 2046, 3482, 4969, 5000, 6169, 6536, 6896
SnaBI TACGTA 2 cut(s) 5114, 6716
SpeI ACTAGT 1 cut(s) 2614
SphI GCATGC 1 cut(s) 2017
SspI AATATT 2 cut(s) 6887, 7796
SstI GAGCTC 2 cut(s) 386, 3433
StyI CCWWGG 6 cut(s) 1683, 2346, 2450, 5082, 6693, 7149
TaiI ACGT 9 cut(s) 13, 901, 1795, 2239, 2283, 2986, 5116, 6718, 7541
TaqII GACCGA 5 cut(s) 285, 5243, 6593, 6671, 7655
TatI WGTACW 8 cut(s) 669, 2713, 3221, 4141, 6568, 6954, 7896, 8043
TauI GCSGC 6 cut(s) 33, 55, 238, 314, 6101, 7363
TseFI GTSAC 8 cut(s) 2403, 2494, 3703, 3836, 5089, 5484, 5617, 6772
Tsp45I GTSAC 8 cut(s) 2403, 2494, 3703, 3836, 5089, 5484, 5617, 6772
TspGWI ACGGA 3 cut(s) 21, 4528, 6377
Tth111I GACNNNGTC 1 cut(s) 323
Van91I CCANNNNNTGG 3 cut(s) 1175, 1520, 4457
Vha464I CTTAAG 2 cut(s) 833, 6536
VneI GTGCAC 2 cut(s) 5168, 7404
VpaK11BI GGWCC 7 cut(s) 2413, 2438, 4202, 4573, 4712, 6247, 7242
VspI ATTAAT 5 cut(s) 1517, 3033, 3306, 4496, 6080
XagI CCTNNNNNAGG 1 cut(s) 1305
XbaI TCTAGA 2 cut(s) 4298, 6004
XcmI CCANNNNNNNNNTGG 1 cut(s) 259
XmiI GTMKAC 7 cut(s) 273, 1716, 1945, 4935, 5264, 6871, 7040
XmnI GAANNNNTTC 4 cut(s) 490, 828, 2117, 8117
ZraI GACGTC 1 cut(s) 11
Zsp2I ATGCAT 5 cut(s) 457, 792, 2674, 3325, 6554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.