MD04G1012800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000582
Physical Location & Seq
Reverse (-)
1414396 .. 1441733
27338 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1012800.v1.1.491

Sequence Viewer

Length: 8889 bp
ATGTTCAGGCACCCTTCTATTTTCCGACCGCCCTCCGCCAGAGAACGGGATTGGCGACAACCGCCGCCGCCTCAGCAATCATACCCACAACCTCTAAACTCCAATTTCTCTCTCCAAAACCAAAACCAAAACCAAAACCCCACCAATTCATCCTATATTTATCCTCAAAACCCCGCCTTTGCCCCCAACCTTGCCCACAACCCCAATTTCCCTAATTTTATATTCCAAAACCCTAATTTCCCAATCCAAACCCCTAGCTTCCCGCTCCAAAACCCTATTTTTAATCCCCTACAGCTTCCAAATCCAACGTTTCAGCCCCAGACCTCTTCTGAGAACCCGAAACCCAATGTCGATCCTCAACAGCTCCCAAATTCTGCGTTTCGGCCTCAGACTTCATGTGAGAACCTGAAAGAGATGCTGGAGAGGATCGATCGGGCAGTCGAAAAGGCTCGCGGTGATTTTGTGGCGGCAGGAAGGAGCGTCTCGGCGTGGAAGGTGTTACAGTCTGCGCTTGTGACGCTCAAGGTTGATGACTGGAGCTTTCTTCTCGGGCTTCAAATGCATCAAGTCCCTTCTCTTCACCGCCTCATGCTCACCGAAGGCAGGATAAGTTCATTTATCCATTGCTTTGTTCTGGCTCGAAGAATTACATCTTTGTATGATTTGGAACTTGCAATCTGCAAGAATGAGGATATTGAGGAGTTTGAAGTGCTGGGATTGGGCCCTTTGTTCCGTCACCCCCTTGTTTTGCATTATTTCCCAGTGAGTTCTGATACAACTGAAGTGTTTAAGATAACTAGCGAGGAGATACTATGTTTACTCACCTTCTATCAAGAACATAAACGTAAAGTCTCTGTTGAAGAATTTTTGGATTATATTGTTAAGAGGCGATCAGTTGCAAGCAAGGAAAATATCGGAATTCGAATTTGTAGCTTGGGGGTGCACGTTTCTTCTATTCGGAAAGGCAGGAAGTTAGAACGTGCCGCTCTAATTAAATCTCAAGAGCAAGTTAGAATGCGCCGCTATAAGAAGAAGGCACCAATTCTTACCTCATTGAATGAGCAGCTAGACAAGCATTTCTGTGACATTTCTCAGCATGCTGAATTGTTTTCTGTTGTACAAAAGGAATTTTGTGGCAAGAAAGATAGATTTGTTTCTTCAAGTTCAAAGGATGGAGGTGGTAAGGATTTTTTACATGAAGATGACAAAGATAAAGGTCATACATTCACCGAGGTTAACTTTTCGTTACAATCTGCTAAAATTTCGGACCAAGTGAGTAACTCTACTTACGTCTCTGCAATAGAAGAGAGACCTTTGCACGGAACAAATCACCCTTCTCCAGCTTGTGGAACCCAAAGGCATAATGAGGGTAATGGGTCCGTAAAAAAGAAAAGAAAGTGCGAAAATCTAAGCAGCCCCATCTCTGTCCCCCAAAAATTACGAAAGAGAGACAAGGTAGAACATGATGTTCTTTTTACTAAGAATGACCATGAAACCGAGGAGGACAGTAGTATGATTAAAACTGATCTTTCAGTTTCCAATGATTTTTTGAGGAAGTTTATTACAACTTGGAAGGATGCATGTAAGGAGCAGACTGTGACTGAGGTACTTTGGAGCATGCTTCAGTGTTATGATAAGAGGACGAAAAAAATCAGCAGAATGTTTGCTTCAGACCCATTGATTGGATTATTGAATGTTGCTGTCTCATCTATCAAATGTGGAATGTGGGATAGCATGTATGATACATCCCAATCCATTGGCCAACACGAATTAAGTAGAACTTCTACTGATAAATATTCTGAATATTTGAACACAGATGTTGAACCAATTATTAAGGATGCACCGCCAGTCATTACTGAACATGTTACCCAACATACTCAGACCTCACAGTGCCTAGAGCAGGATCATCAACGTCGTCAGAGAATTCATGGATGTCGTCAGAGAGTGCTCACCATGGATTATGACAATGTTGTGGCAGCCTCACACTGCCTGGAGCAGGATCATCAACGTCGTCAGAGGATTCATGGACGTCGTAAGAGAGTGCTCACCATGGATTATGACAATGTTGTGGCAGCCTCACGCTGCCTAGTGCAGGATCATCAACGTCGTCTGAGAATTCATGGACGTCGTCAGAGAGTTCTTGGTAAGCCAGTCCGGTGTATGCAGAAGATAATCCAAAAGAGTGAGAAAAAGAACACGGGCAAAGGCTCATCCAGAGGATCTCCTCTTGAAAAAAAAGTCTGCTATCTGTGTGGTCAAGTTGGACACGTTCACAAGAACTGCTTCCAACAGACTGGATCATCTTTGGCCCCAAAGGATCCCTTGGAATTGGTTCAGCACCCAGCTCAGTCAAACAGATATGTTGGGAAATTTCCAGTTCATCCCCAGCCACAACAGAGTATGAACAGAGCACCAATGCCACAGAACAGTGGATGCGAATTTGTAGCATGTGGACCTGCAGGTGGTCAAGTAGCCGTTGCTGGAGAAGCGATGGAAGAGAAAGTCAATGCTGTGGTAGATGGTGTGTCAGTTGAAGACATAATCAGGAAAGTTGCTACATATTTTGAATTTGATCATGGAATGTGCATCAGCGGTGAGCCACTTCAGGAGAAGATATTTATCTTCTTGAGAAAGCTTTGCAATTGTGAAATTTGGTTGGTTGAAGAATTTCGTGTAAAGGAATTTAGGTCCCTTGGTTTTGGGGAATTTCTAATGTTTTTAGAAAAATATGCCTGTCTACTTCCACGTGAGCTGTGCAAGTTCTTGACTGGTGACGGAAGTGAAAAGTGTCCTTTGGAGGTTTGCATGCTCCAGCATTATTTGATTGTGTTAGTTTCGCAAGCTATAAATAGTTTATGGGAAGATGAAGAAATTAGCAAACTAAATATTCCATTACTGCTTAGGAAGCAGTTTCCATTGATTAGTTTCCAAACCATTGAAAATAGTTCTGTAGAAGATTTTCTGAGTATAGTGGAGAAGCATAAAAGCACTGCAATTTCCAAACGTATTCTATTTTCAATGACATTATATGGAACTAGTTACCCGATAGACTCATCAAAGCACTCTAAGAAAACGAAAACCCATGAATCTGTAACCTCCAAGGATGCAATTCAAGTCCTACTCAGAGCTCCAATGATGTTGGATTTAAACTTATGGTCACATTGGGACCTCTTGTTTGCTCCCTCTCTTGGTCCACTTGTACTATGGTTATTGAATGAGGTCAACACTGATGAACTGCTGTGTTTGGTGACAAAGGATGGAAAAGTGATTCGGTTAGACCATTCATCTACTGTAGGTTCATTCTTGGAAGCTGCTCTTCAAGGATCGTCTTTCCAAACAGCAGTGAAAATGTTATCTCTGTTCTCACTATCTGGGGGAGAAAAACATGTCCCAGTGTCCCTTTTGAAATTTCATCTGCAGCATGCATTTGAAGTCATTTTGAAGAATCATCTTCTGGAAGTAAAAGTCAGTAAGAATTTTCTTAATCAAGAAAAAGATTTTTCTGGAAAGCAAATGGTTTGTGAAGGTTCGACAAGTAAATTATGTAATGAGTTACACAGGGACCTAACTCGGATGAATATCGGTGAATCAGTTTTATCAAGATTTGTCATTGATTGTCTTGGCTATCTACCTGCAGAGTTTCGTAGTTTTGCTGCCGATGTATTGCTTTCAGGGATGCAATCTGTTTTCAAACATGCTGCTTCAGCCATTTTGGGTGAGTGCAAGCAAACAGAGCAGCGGCTCATGCTTCATGAAGTTGGCTTATCTCTTGGTATAATAGAATGGATTGATGATTTCCATAAATTTTGTTCCTATGATGCTGCTGATTCATTCATTTCTGGGTCGTCATGCTTCGCTGTTAGGCATAAAACGGGGTCAGACTCAAAGTATATGAAAGATGTGTCAGATAAGCTTGCCGCTTATGAAGGGACTATGAGTGCATCTGTTATGGAAGACAAGCAAAAAGATGAATGTACTGAAGCCTGTCTAAAGATTAGTTGTGCAGAAGCTTCCGAAGCTACAATTGTCAGTGGCTACCCAGAGCATTATGCTGAACTTAATGAACTGGAAGATCGAGTGCTGGTAATCGAGTCAATTAGGAGAGATGAATTTGGTCTAGATTCAAGCCTGTCAAATGTTGAAAGTATCATCCTAAAGAAGCAGCACACTCGGTTAGGCCGAGCTCTGCATTGCCTTTCGCAGGAATTGTATTCTCAGGATTCCCATTTTCTTCTTGAGCTGGTTCAAAACGCTGATGATAATACCTACCCATCAAATGTAGAACCAACTCTAACATTCATTCTTCAAGATTCAGGTATTCTTGTTTTGAATAATGAACGGGGCTTTTCTGCCCAGAACATTAGGGCACTATGTGATGTTGGAAATTCAACCAAGAAAGGATCTAATGCTGGATACATAGGGCAGAAGGGCATTGGTTTCAAATCAGTTTTTCGGGTTACAGATGCTCCAGAAATACATTCCAATGGTTTTCATATAAAGTTTGATATAAGTGAGGGTCAGATTGGTTTAATTTTGCCCACAGTTGTACCTCCTCGCAATATTGACTTGTTTAGCAGCCTGACATCTATTGACAATGATAAACGGGATTGTAACAGCTGGAACACTTGCATTGTTCTTCCTTTCAGATCAAAAGTATCAGATGGAACTGTCATGATAAACATAATTAATATGTTTTCAGATCTTCATCCATCTCTACTGCTCTTTCTCCACCGCCTCCAGTGTATAAAGTTTAGAAACTTGCTCGATAATACCCTTACAGTCATGAGAAAATATATTGTGGGAGATGGTATCGTTAAGATTTCATGTGGAAAAGAGAACATGACATGGTTTGTAGTTTCTCAGAAATTGCAAGCAGATTTCATTCGTACTGATGTACAGACAACAGAAATCTCAATTGCATTTACTTTGAAGGAATCAGATAATGGTGATTACAGTTCCGATCTAATCCAACAGCCTGTTTTTTCATATCTACCTCTCAGAACATATGGACTGAAATTTATTCTTCAGGGTGATTTTGTTCTTCCTTCATCTAGAGAGGAAGTAGATGGAGATAGTCCCTGGAACCAGTGGCTGTTGTCTGAATTTCCTGATTTGTTTGTCAATGCAGAGAAATCATTTTGTTCTCTTCCATGTTTTAAAGAGAATCCCGGGAGAGCTGTGACAGTCTATATGTCCTTTGTTCCGCTTGTGGGTGAAGTGCATGGTTTCTTTTCTCCTCTTCCGCGATTGATTACTGCAAAATTACGAGCATCGAATTGCTTACTCATGGAAGGGGGAAATAATGAATGGGTTCCTCCTTGCAGAGTCCTAAGAGGTTGGAATAAACAGGCTCGTTTGCTTCTCCCTGATGCCTTACTGCGTGAGCATCTTGGCCTTGGGTTCTTGGATAAAAATATACTTCTGCCGGATCCGCTCGCAAGAGTTCTAGGTATTAGTGAGTATGGACCCAAAGTTCTGCTTCAACTTATGGACTCTTTATGTCATAAACAAAATGGCCTCAAATCAATGGGACTGAGTTGGCTGGCCACCTGGCTAAGTGCACTTTATGCAATGTCATTCAGTTCTTCTGTCGAAGCTTCATTTGAATCGGGAATAGAAATGGAATTCATACATACCCTTCGAAAAATTCCTTTCATTCCTCTTTCAGATGGTACATACGGTGCAGTGGATGAAGGCCCAATTTGGTTACATTTTGATGCCTTAAAGACTGAGTTTGAGGGTCAGCATGGACTCGAGTCTTTTCCTGATTTGTATGCTAAACTTCGGATTGTAAATCCTGGCTTTCTCATTGCATCATGTGCTGATGTGCCATCCATGGATGTGACGACATCTGACAAAGTTACAAGTATGCTTCGTAGGATTGGTGTCCAACAGTTATCCGCACATGAAATTATCAAGGAGCACATCTTGCCGGATATATCTGATGACAGGTTTACGGACAGTGATAAGAATTTGATGACTGATTATATTTGCTTTGTAATGGTTCACCTACAGTCGGACTGCTATGATTGTCGTTCTGAAAGGGAATACATAATCTCAGAACTAGGAAACAAAGCATATATATTAACAAATGGCGGCTTTAAACGACCAGCTGAAGCATCAATTCATTTCAGTAAAGCATTTGGAAACCCATTTGACATAAATAAATTGATTGATGGAGTGGATCTGGTTTGGCATGAGGTTGACATCTCCTATCTGAAGCATCCTGCCACCAGATCACTCCCAAGTGGACTGATGAAATGGAGGGATTTTTTCCAGAAAATTGGTGTTACAGATTTTGTGAAAGTAGTTCAAGTTGAGAAAGGAATCAGTAGTTTATCCGATGCTTTATTGAATGAGTTGATGTTCAATAAGGACATCATTTCCCTTGGATTGAATGCCACTGATTGGGAGTCACCTGAATTAGTCCAGTTATTGACCCAATTATCCAGAGATGACGACAAAAAAGGTTGTGAGTATCTCTTAGAGGTTCTCGATACATTATGGGATGATTGCTACAGTGATAAAACAATAGGTTACTGCATTTCTAAATCTGTAGCTGATAGATGGCCCTTCAGATCTTCATTTATAAGCAGTATCTGTGATGTGCAATGGGTAGTATCAACAATGGATGATGAACTTCACTATCCAAAAACTTTGTATCACGGCTGTCATGCAGTGTGCTCGATTCTGGGTGCATCTGCTCCATATTCTGTTCCAAAGGTGAGAAGTGGAAAGTTTGCAAGTGATATTGGGTTTAAGACAAGAATCTCTCTTGGCGATGTTCTTGAGATTTTGAAACTCTGGAGGTGTGAGAAACCATTCAGGGCCAGCCTAGCACAAATGTTCAAATTTTACTCATTAGTTTGGAATGAAATGGCTCCTTCAAAGCAGATAATTATGGACGAGTTCCATTCTGGACCTTCCATATTTGTTCCATATCAATCTGGCTTCAGTCACGAGGATGTGGTGTCTGGTGTATTTTTGTCCCCTGAAGAAGTATATTGGGATGATTCCTCTAACTTTATCAAGGCGGTCCGTCCTGAGTGCAGCTCAACAGCTGTCAATCACATCCCCTTAAATAAGATGCTTCGTAATATCTACCCAGGCCTTCATGACTTCTTTGTTGGTCACTTTGGAGTACATGAGACCCCACCTTTTCGGAGCTACCTTCAGATTTTGTTAGATTTAACAAATGTTGCTTTGCCTTCACAAGCAGCTAATGCTGTTTTTCGAGTTCTCCTCAAATGGACTGATGGGTTGAAGTCAGGATCAAGTGCTGAAGATATTCTTTATCTGAAAGGGTCTCTTACGAAGATTGAATGCACGGTGCTTCCTACTGTGCAAGATAAGTGGGTTTCTCTACATCCTTCCTTTGGATTTGTCTGCTGGTGTGATGATTTGATGTTAAGACAGCAGTTTATGCATTTGGATGGCGTTCATTTTTTATACTTCGGTGAATTAAGTCACGATGATGTAGAGATGCTATTTAAGAAAGTTTCCATTCTCTTGAAAGCTTTAGGGATTCCTGCACTTTCAGAGGCTGTAACTCGTCACACAATATTTTCTGGTCTGGGAGATTGTAGCTTTAAAGCTGCATTGCTGGATTGGGCTCTTCCATATGCACAACGCTACTTACAAAGTGTACACCCTGATAAATATACACAACTCAAGCACTTTGGATTTGATATAGTAAATCGTCTACAAGTAGTAGTTGTTGAAAAGCTGTTTTATCAGAACGTTATAAAGAGTTTCGGAATTAAATCCAAGAAGAGGCTAAGATGTAGCTGTCTGCTGCAGGGTAGCACATTGTATACGACCCAAGAGCCAGATTCACACGCATTTTTTGTGGAGCTATCACGTTTGTTTTTTGACGGAATTCCAGAATTACACTTGGCAAATTTCCTTCATATGATCACAACCATGGCTGAATCAGGTTCAACTGAGGAGCAGACAGAGTTTTTTATCTTGAACAGCCAAAAGGTGCCGAAACTTTCTGGCGGAGAATCTGTTTGGTCCCTGCCATCAATGCGTTCATTGACAGACAATTACAAGTCACTCCAAAGTAGTGTAACTTCGACAGAAATAAATGAGGAAAGCTGTTCAAAATCCAAAAGGAAAGCAATAAAGTGGCCACCTGTTGATTGGAAAACTGCACCGGTTGCACAGTTTAGCAGTGCCTTGGAAAAAGAAATGTGTGATGATTCTCGTGGCATTATCGGACAGTTGGATGATTTGACTCCAGGTTCAGTTGACATTAATTGGACCATTGAAGATGATTCAGCAACGACATCTGCGGCTTTAGTTATGCCAGACTCCAATGATCTGCAAGAACATTATGGCGCAGCTTGCAATGAGACTGACAATAGAATGCGTATTGAATTTGATCCTTTTAACTTAGGTTTTGTTTCTGACCCTCCTGAGATGCGTTCGTCTAGTTTTAGCCAAAGAGACCAACCTAGACATGCTGGTACATCCAGTGGAAGAGATGGAAGAGATGCGATGCTGACCGGGAGACTAGGTGAGCTTGTTGCTTTTAAATACTTGATAGCAAAAGCTGGAAAGTCTGTTGTGAAGTGGGTCAATGAATGTAACGAAACCGGGCTTCCCTATGACATAGTTATAGGGGAGAAGGAAGATAGTACCGAGTTCATTGAAGTTAAAGCAACCCAGTTCCGGACAAAAGACTGGTTTCGCATATCAATGAGGGAGTGGCAATTCGCAGTTGAAAAAGGTGAAGCTTTCAGCATTTTGCATGTCATTTTGTTGGGTAATAATGCTGCAAGGGTCTCGGTATACAAGAACCCTGCGAAATTGTGTCAGTCGGGCAAGCTGCATTTGAATCTTTCGATGCCTAAGCATCACAAGGAATTATTCCTGCTGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3883

Protein Analysis

2963

Amino Acids

334.81

Weight (kDa)

6.36

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SACS PF25794 1408 - 1587 1.5e-08 Sacsin domain
NOV_C PF13020 2841 - 2927 2.2e-19 Protein NO VEIN, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08300 AT1G08300 AT1G08300 AT4G13750
fragaria_vesca FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_4g13620 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660
malus_domestica MD04G1012800.v1.1 MD04G1012900.v1.1 MD04G1013100.v1.1 MD04G1013300.v1.1
prunus_persica Prupe.1G159000_v2.0.a1 Prupe.1G159100_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G358100_v2.0.a1
pyrus_communis pycom04g01020 pycom04g01030
rosa_chinensis RchiOBHm_Chr4g0414341 RchiOBHm_Chr4g0414351 RchiOBHm_Chr6g0275261 RchiOBHm_Chr7g0213881 RchiOBHm_Chr7g0213891
rosa_laevigata RLG00000008153 RLG00000008155 RLG00000013477
rosa_multiflora Rmu_co8510163.1_g000001 Rmu_sc0004087.1_g000027 Rmu_sc0005196.1_g000014 Rmu_sc0005558.1_g000005 Rmu_sc0005558.1_g000006 Rmu_sc0008100.1_g000005 Rmu_sc0008560.1_g000005
rosa_roxburghii Rroxscaffold_5G00358210 Rroxscaffold_5G00358220 Rroxscaffold_7G00187920 Rroxscaffold_7G00187930 Rroxscaffold_7G00193450
rosa_rugosa Rorug04G0127100 Rorug04G0127200 Rorug04G0127300 Rorug04G0127400 Rorug06G0090600
rosa_samantha Rh4AG185200 Rh4AG185300 Rh4AG185500 Rh4BG184700 Rh4BG184800 Rh4CG198000 Rh4CG198100 Rh4DG182400 Rh4DG182600 Rh6AG204100 Rh6BG207000 Rh6CG209600 Rh6DG200000 Rh7AG277400 Rh7CG296400 Rh7CG296500
rosa_wichuraiana Rw4G015850 Rw4G015860 Rw6G017730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 6590, 7745
AarI CACCTGC 1 cut(s) 2450
AatII GACGTC 2 cut(s) 2032, 2128
Acc36I ACCTGC 3 cut(s) 2450, 2464, 3640
AccB1I GGYRCC 3 cut(s) 9, 1036, 7984
AccB7I CCANNNNNTGG 3 cut(s) 1346, 1682, 6408
AccBSI CCGCTC 3 cut(s) 265, 986, 5434
AccI GTMKAC 4 cut(s) 2737, 7702, 7814, 8796
AccII CGCG 2 cut(s) 453, 5245
AccIII TCCGGA 1 cut(s) 8676
AclI AACGTT 2 cut(s) 308, 7740
AcoI YGGCCR 3 cut(s) 1759, 5544, 8132
AcvI CACGTG 1 cut(s) 2747
AcyI GRCGYC 2 cut(s) 2029, 2125
AdeI CACNNNGTG 1 cut(s) 4373
AflIII ACRYGT 3 cut(s) 1861, 2266, 3385
AgeI ACCGGT 1 cut(s) 8158
AhlI ACTAGT 1 cut(s) 3035
AjnI CCWGG 6 cut(s) 1989, 5078, 5549, 5797, 7105, 8242
AloI GAACNNNNNNTCC 2 cut(s) 5457, 5489
Alw21I GWGCWC 9 cut(s) 945, 1950, 2046, 2413, 3130, 4186, 5563, 5925, 6686
Alw44I GTGCAC 2 cut(s) 941, 5559
AlwNI CAGNNNCTG 3 cut(s) 5092, 6600, 7544
Ama87I CYCGRG 3 cut(s) 548, 5168, 5753
Aor13HI TCCGGA 1 cut(s) 8676
ApaI GGGCCC 1 cut(s) 725
ApaLI GTGCAC 2 cut(s) 941, 5559
ArsI GACNNNNNNTTYG 2 cut(s) 3158, 3190
AseI ATTAAT 2 cut(s) 4686, 8259
AsiGI ACCGGT 1 cut(s) 8158
Asp700I GAANNNNTTC 7 cut(s) 2282, 2331, 2667, 2958, 5310, 6821, 7287
AspLEI GCGC 3 cut(s) 511, 1020, 8345
AsuC2I CCSGG 4 cut(s) 5169, 5170, 8512, 8602
AsuII TTCGAA 2 cut(s) 922, 5641
AvaI CYCGRG 3 cut(s) 548, 5168, 5753
BaeGI GKGCMC 4 cut(s) 725, 945, 4369, 5563
BaeI ACNNNNGTAYC 2 cut(s) 4530, 4563
BalI TGGCCA 3 cut(s) 1761, 5546, 8134
BamHI GGATCC 2 cut(s) 2317, 5428
BanI GGYRCC 3 cut(s) 9, 1036, 7984
BanII GRGCYC 4 cut(s) 725, 3130, 4186, 7615
BarI GAAGNNNNNNTAC 2 cut(s) 8059, 8091
BauI CACGAG 2 cut(s) 6959, 8208
BbrPI CACGTG 1 cut(s) 2747
BbsI GAAGAC 2 cut(s) 2541, 3960
Bbv12I GWGCWC 9 cut(s) 945, 1950, 2046, 2413, 3130, 4186, 5563, 5925, 6686
BbvCI CCTCAGC 1 cut(s) 72
BceAI ACGGC 2 cut(s) 2459, 6682
BcgI CGANNNNNNTGC 6 cut(s) 4151, 4185, 6666, 6700, 8772, 8806
BciT130I CCWGG 6 cut(s) 1991, 5080, 5551, 5799, 7107, 8244
BciVI GTATCC 1 cut(s) 4406
BclI TGATCA 2 cut(s) 2572, 7914
BcnI CCSGG 4 cut(s) 5169, 5170, 8512, 8602
BcuI ACTAGT 1 cut(s) 3035
BfuAI ACCTGC 3 cut(s) 2450, 2464, 3640
BfuI GTATCC 1 cut(s) 4406
BglII AGATCT 2 cut(s) 4699, 6578
BmeT110I CYCGRG 3 cut(s) 548, 5168, 5753
BmrI ACTGGG 3 cut(s) 755, 3386, 8665
BmuI ACTGGG 3 cut(s) 755, 3386, 8665
BoxI GACNNNNGTC 1 cut(s) 5755
BpiI GAAGAC 2 cut(s) 2541, 3960
BplI GAGNNNNNCTC 4 cut(s) 7037, 7069, 7227, 7259
Bpu10I CCTNAGC 3 cut(s) 72, 2900, 8856
Bpu14I TTCGAA 2 cut(s) 922, 5641
BpuEI CTTGAG 6 cut(s) 506, 984, 2647, 4256, 6809, 7655
BpuMI CCSGG 4 cut(s) 5169, 5170, 8512, 8602
Bsa29I ATCGAT 1 cut(s) 429
BsaAI YACGTR 1 cut(s) 2747
BsaBI GATNNNNATC 3 cut(s) 2618, 3578, 4704
BsaHI GRCGYC 2 cut(s) 2029, 2125
BsaI GGTCTC 5 cut(s) 1303, 7142, 7311, 8445, 8794
BsaWI WCCGGW 3 cut(s) 2154, 8158, 8676
BsaXI ACNNNNNCTCC 6 cut(s) 4450, 4480, 7995, 8025, 8506, 8536
Bse118I RCCGGY 1 cut(s) 8158
Bse3DI GCAATG 7 cut(s) 622, 4189, 5577, 5808, 6617, 7598, 8359
Bse8I GATNNNNATC 3 cut(s) 2618, 3578, 4704
BseAI TCCGGA 1 cut(s) 8676
BseBI CCWGG 6 cut(s) 1991, 5080, 5551, 5799, 7107, 8244
BseCI ATCGAT 1 cut(s) 429
BseJI GATNNNNATC 3 cut(s) 2618, 3578, 4704
BseMI GCAATG 7 cut(s) 622, 4189, 5577, 5808, 6617, 7598, 8359
BseRI GAGGAG 8 cut(s) 713, 818, 1514, 2214, 4542, 5226, 7232, 7961
BseSI GKGCMC 4 cut(s) 725, 945, 4369, 5563
BseYI CCCAGC 3 cut(s) 712, 2341, 2385
BsgI GTGCAG 6 cut(s) 2111, 4023, 5703, 7069, 7515, 8139
Bsh1236I CGCG 2 cut(s) 453, 5245
Bsh1285I CGRYCG 2 cut(s) 29, 433
BshNI GGYRCC 3 cut(s) 9, 1036, 7984
BshTI ACCGGT 1 cut(s) 8158
BshVI ATCGAT 1 cut(s) 429
BsiEI CGRYCG 2 cut(s) 29, 433
BsiHKAI GWGCWC 9 cut(s) 945, 1950, 2046, 2413, 3130, 4186, 5563, 5925, 6686
BsiHKCI CYCGRG 3 cut(s) 548, 5168, 5753
BsiSI CCGG 8 cut(s) 2155, 5169, 5426, 5933, 8159, 8511, 8601, 8677
BsmBI CGTCTC 2 cut(s) 487, 1297
BsmI GAATGC 4 cut(s) 1020, 6403, 7328, 8376
Bso31I GGTCTC 5 cut(s) 1303, 7142, 7311, 8445, 8794
BsoBI CYCGRG 3 cut(s) 548, 5168, 5753
Bsp119I TTCGAA 2 cut(s) 922, 5641
Bsp120I GGGCCC 1 cut(s) 721
Bsp13I TCCGGA 1 cut(s) 8676
Bsp1407I TGTACA 3 cut(s) 1117, 4894, 7645
Bsp19I CCATGG 4 cut(s) 1953, 2049, 5835, 7923
BspDI ATCGAT 1 cut(s) 429
BspEI TCCGGA 1 cut(s) 8676
BspFNI CGCG 2 cut(s) 453, 5245
BspHI TCATGA 4 cut(s) 3751, 4671, 4782, 7114
BspMAI CTGCAG 4 cut(s) 2461, 3420, 3637, 7800
BspMI ACCTGC 3 cut(s) 2450, 2464, 3640
BspQI GCTCTTC 2 cut(s) 3321, 7620
BspT104I TTCGAA 2 cut(s) 922, 5641
BspT107I GGYRCC 3 cut(s) 9, 1036, 7984
BspTNI GGTCTC 5 cut(s) 1303, 7142, 7311, 8445, 8794
BsrBI CCGCTC 3 cut(s) 265, 986, 5434
BsrDI GCAATG 7 cut(s) 622, 4189, 5577, 5808, 6617, 7598, 8359
BsrFI RCCGGY 1 cut(s) 8158
BsrGI TGTACA 3 cut(s) 1117, 4894, 7645
BssAI RCCGGY 1 cut(s) 8158
BssNAI GTATAC 2 cut(s) 7815, 8797
BssNI GRCGYC 2 cut(s) 2029, 2125
BssSI CACGAG 2 cut(s) 6959, 8208
Bst1107I GTATAC 2 cut(s) 7815, 8797
Bst2BI CACGAG 2 cut(s) 6959, 8208
Bst2UI CCWGG 6 cut(s) 1991, 5080, 5551, 5799, 7107, 8244
BstACI GRCGYC 2 cut(s) 2029, 2125
BstAPI GCANNNNNTGC 6 cut(s) 5567, 5819, 5929, 7223, 7423, 8162
BstAUI TGTACA 3 cut(s) 1117, 4894, 7645
BstBAI YACGTR 1 cut(s) 2747
BstBI TTCGAA 2 cut(s) 922, 5641
BstDSI CCRYGG 4 cut(s) 1953, 2049, 5835, 7923
BstENI CCTNNNNNAGG 4 cut(s) 1898, 1994, 2090, 4199
BstFNI CGCG 2 cut(s) 453, 5245
BstHHI GCGC 3 cut(s) 511, 1020, 8345
BstMCI CGRYCG 2 cut(s) 29, 433
BstNI CCWGG 6 cut(s) 1991, 5080, 5551, 5799, 7107, 8244
BstPAI GACNNNNGTC 1 cut(s) 5755
BstSLI GKGCMC 4 cut(s) 725, 945, 4369, 5563
BstUI CGCG 2 cut(s) 453, 5245
BstV2I GAAGAC 2 cut(s) 2541, 3960
BstX2I RGATCY 7 cut(s) 2219, 2317, 4400, 4699, 5428, 6184, 6578
BstXI CCANNNNNNTGG 3 cut(s) 1757, 2294, 6284
BstYI RGATCY 7 cut(s) 2219, 2317, 4400, 4699, 5428, 6184, 6578
BstZ17I GTATAC 2 cut(s) 7815, 8797
Bsu15I ATCGAT 1 cut(s) 429
BsuI GTATCC 1 cut(s) 4406
BsuTUI ATCGAT 1 cut(s) 429
BtgI CCRYGG 4 cut(s) 1953, 2049, 5835, 7923
BtgZI GCGATG 3 cut(s) 2504, 6795, 8516
BtsI GCAGTG 6 cut(s) 1984, 2988, 3348, 5691, 6684, 8182
BveI ACCTGC 3 cut(s) 2450, 2464, 3640
CaiI CAGNNNCTG 3 cut(s) 5092, 6600, 7544
CciI TCATGA 4 cut(s) 3751, 4671, 4782, 7114
CfoI GCGC 3 cut(s) 511, 1020, 8345
Cfr10I RCCGGY 1 cut(s) 8158
Cfr9I CCCGGG 1 cut(s) 5168
ClaI ATCGAT 1 cut(s) 429
CpoI CGGWCCG 1 cut(s) 7036
CseI GACGC 2 cut(s) 469, 526
CspAI ACCGGT 1 cut(s) 8158
CspCI CAANNNNNGTGG 2 cut(s) 7334, 7369
CspI CGGWCCG 1 cut(s) 7036
DraI TTTAAA 5 cut(s) 3147, 5158, 6103, 7591, 8539
DraIII CACNNNGTG 1 cut(s) 4373
EaeI YGGCCR 3 cut(s) 1759, 5544, 8132
EciI GGCGGA 2 cut(s) 25, 8016
Ecl136II GAGCTC 2 cut(s) 3128, 4184
Eco147I AGGCCT 1 cut(s) 7110
Eco24I GRGCYC 4 cut(s) 725, 3130, 4186, 7615
Eco31I GGTCTC 5 cut(s) 1303, 7142, 7311, 8445, 8794
Eco53kI GAGCTC 2 cut(s) 3128, 4184
Eco72I CACGTG 1 cut(s) 2747
Eco88I CYCGRG 3 cut(s) 548, 5168, 5753
EcoICRI GAGCTC 2 cut(s) 3128, 4184
EcoNI CCTNNNNNAGG 4 cut(s) 1898, 1994, 2090, 4199
EcoO109I RGGNCCY 4 cut(s) 722, 2688, 3166, 3562
EcoRI GAATTC 5 cut(s) 918, 1923, 2115, 5624, 7878
EcoRII CCWGG 6 cut(s) 1989, 5078, 5549, 5797, 7105, 8242
EcoT22I ATGCAT 4 cut(s) 564, 1582, 3427, 7428
EcoT38I GRGCYC 4 cut(s) 725, 3130, 4186, 7615
Esp3I CGTCTC 2 cut(s) 487, 1297
FauI CCCGC 2 cut(s) 181, 270
FauNDI CATATG 3 cut(s) 5005, 7621, 7911
FbaI TGATCA 2 cut(s) 2572, 7914
FblI GTMKAC 4 cut(s) 2737, 7702, 7814, 8796
FriOI GRGCYC 4 cut(s) 725, 3130, 4186, 7615
GlaI GCGC 3 cut(s) 510, 1019, 8344
GsaI CCCAGC 3 cut(s) 716, 2345, 2389
HapII CCGG 8 cut(s) 2155, 5169, 5426, 5933, 8159, 8511, 8601, 8677
HgaI GACGC 2 cut(s) 469, 526
HhaI GCGC 3 cut(s) 511, 1020, 8345
Hin1I GRCGYC 2 cut(s) 2029, 2125
Hin6I GCGC 3 cut(s) 509, 1018, 8343
HinP1I GCGC 3 cut(s) 509, 1018, 8343
HincII GTYRAC 4 cut(s) 1237, 3223, 6205, 8254
HindII GTYRAC 4 cut(s) 1237, 3223, 6205, 8254
HindIII AAGCTT 6 cut(s) 2633, 3911, 4008, 5595, 7515, 8739
HpaI GTTAAC 1 cut(s) 1237
HpaII CCGG 8 cut(s) 2155, 5169, 5426, 5933, 8159, 8511, 8601, 8677
Hpy99I CGWCG 5 cut(s) 1917, 2013, 2034, 2109, 2130
Hsp92I GRCGYC 2 cut(s) 2029, 2125
HspAI GCGC 3 cut(s) 509, 1018, 8343
Kpn2I TCCGGA 1 cut(s) 8676
Ksp22I TGATCA 2 cut(s) 2572, 7914
KspAI GTTAAC 1 cut(s) 1237
LguI GCTCTTC 2 cut(s) 3321, 7620
MbiI CCGCTC 3 cut(s) 265, 986, 5434
MfeI CAATTG 3 cut(s) 2641, 4023, 4914
MflI RGATCY 7 cut(s) 2219, 2317, 4400, 4699, 5428, 6184, 6578
MlsI TGGCCA 3 cut(s) 1761, 5546, 8134
MluNI TGGCCA 3 cut(s) 1761, 5546, 8134
Mox20I TGGCCA 3 cut(s) 1761, 5546, 8134
Mph1103I ATGCAT 4 cut(s) 564, 1582, 3427, 7428
MroI TCCGGA 1 cut(s) 8676
MroXI GAANNNNTTC 7 cut(s) 2282, 2331, 2667, 2958, 5310, 6821, 7287
MscI TGGCCA 3 cut(s) 1761, 5546, 8134
Msp20I TGGCCA 3 cut(s) 1761, 5546, 8134
MspA1I CMGCKG 5 cut(s) 2592, 3739, 4617, 6113, 7061
MspI CCGG 8 cut(s) 2155, 5169, 5426, 5933, 8159, 8511, 8601, 8677
MunI CAATTG 3 cut(s) 2641, 4023, 4914
Mva1269I GAATGC 4 cut(s) 1020, 6403, 7328, 8376
MvaI CCWGG 6 cut(s) 1991, 5080, 5551, 5799, 7107, 8244
MvnI CGCG 2 cut(s) 453, 5245
NciI CCSGG 4 cut(s) 5169, 5170, 8512, 8602
NcoI CCATGG 4 cut(s) 1953, 2049, 5835, 7923
NdeI CATATG 3 cut(s) 5005, 7621, 7911
NmeAIII GCCGAG 2 cut(s) 464, 4205
NsiI ATGCAT 4 cut(s) 564, 1582, 3427, 7428
NspV TTCGAA 2 cut(s) 922, 5641
PaeI GCATGC 4 cut(s) 1100, 1621, 2809, 3425
PaeR7I CTCGAG 1 cut(s) 5753
PagI TCATGA 4 cut(s) 3751, 4671, 4782, 7114
PaqCI CACCTGC 1 cut(s) 2450
PceI AGGCCT 1 cut(s) 7110
PciI ACATGT 2 cut(s) 1861, 3385
PciSI GCTCTTC 2 cut(s) 3321, 7620
PcsI WCGNNNNNNNCGW 2 cut(s) 52, 4177
PctI GAATGC 4 cut(s) 1020, 6403, 7328, 8376
PdmI GAANNNNTTC 7 cut(s) 2282, 2331, 2667, 2958, 5310, 6821, 7287
PflFI GACNNNGTC 1 cut(s) 2127
PflMI CCANNNNNTGG 3 cut(s) 1346, 1682, 6408
PinAI ACCGGT 1 cut(s) 8158
Ple19I CGATCG 1 cut(s) 433
PmaCI CACGTG 1 cut(s) 2747
PmlI CACGTG 1 cut(s) 2747
Ppu21I YACGTR 1 cut(s) 2747
PpuMI RGGWCCY 3 cut(s) 2688, 3166, 3562
PscI ACATGT 2 cut(s) 1861, 3385
PshAI GACNNNNGTC 1 cut(s) 5755
PshBI ATTAAT 2 cut(s) 4686, 8259
PsiI TTATAA 2 cut(s) 6590, 7745
Psp124BI GAGCTC 2 cut(s) 3130, 4186
Psp1406I AACGTT 2 cut(s) 308, 7740
Psp5II RGGWCCY 3 cut(s) 2688, 3166, 3562
Psp6I CCWGG 6 cut(s) 1989, 5078, 5549, 5797, 7105, 8242
PspCI CACGTG 1 cut(s) 2747
PspFI CCCAGC 3 cut(s) 712, 2341, 2385
PspGI CCWGG 6 cut(s) 1989, 5078, 5549, 5797, 7105, 8242
PspOMI GGGCCC 1 cut(s) 721
PspPPI RGGWCCY 3 cut(s) 2688, 3166, 3562
PspXI VCTCGAGB 1 cut(s) 5753
PstI CTGCAG 4 cut(s) 2461, 3420, 3637, 7800
PstNI CAGNNNCTG 3 cut(s) 5092, 6600, 7544
PsuI RGATCY 7 cut(s) 2219, 2317, 4400, 4699, 5428, 6184, 6578
PsyI GACNNNGTC 1 cut(s) 2127
PvuI CGATCG 1 cut(s) 433
PvuII CAGCTG 3 cut(s) 4617, 6113, 7061
Rsr2I CGGWCCG 1 cut(s) 7036
RsrII CGGWCCG 1 cut(s) 7036
SacI GAGCTC 2 cut(s) 3130, 4186
SapI GCTCTTC 2 cut(s) 3321, 7620
SbfI CCTGCAGG 1 cut(s) 2461
SdaI CCTGCAGG 1 cut(s) 2461
Sfr274I CTCGAG 1 cut(s) 5753
SfuI TTCGAA 2 cut(s) 922, 5641
SlaI CTCGAG 1 cut(s) 5753
SmaI CCCGGG 1 cut(s) 5170
SmlI CTYRAG 7 cut(s) 521, 999, 2626, 4235, 5753, 6788, 7670
SmoI CTYRAG 7 cut(s) 521, 999, 2626, 4235, 5753, 6788, 7670
SpeI ACTAGT 1 cut(s) 3035
SphI GCATGC 4 cut(s) 1100, 1621, 2809, 3425
Sse8387I CCTGCAGG 1 cut(s) 2461
SseBI AGGCCT 1 cut(s) 7110
SspI AATATT 5 cut(s) 1796, 1805, 2887, 4561, 7563
SstI GAGCTC 2 cut(s) 3130, 4186
StuI AGGCCT 1 cut(s) 7110
TatI WGTACW 6 cut(s) 1117, 3199, 3974, 4894, 7141, 7645
TauI GCSGC 9 cut(s) 67, 70, 470, 986, 1023, 3742, 3920, 6099, 8300
TspGWI ACGGA 7 cut(s) 722, 1335, 1369, 2790, 5972, 7028, 7890
TspMI CCCGGG 1 cut(s) 5168
Tth111I GACNNNGTC 1 cut(s) 2127
Van91I CCANNNNNTGG 3 cut(s) 1346, 1682, 6408
VneI GTGCAC 2 cut(s) 941, 5559
VspI ATTAAT 2 cut(s) 4686, 8259
XagI CCTNNNNNAGG 4 cut(s) 1898, 1994, 2090, 4199
XbaI TCTAGA 2 cut(s) 4117, 5051
XcmI CCANNNNNNNNNTGG 2 cut(s) 3201, 8142
XhoI CTCGAG 1 cut(s) 5753
XmaI CCCGGG 1 cut(s) 5168
XmiI GTMKAC 4 cut(s) 2737, 7702, 7814, 8796
XmnI GAANNNNTTC 7 cut(s) 2282, 2331, 2667, 2958, 5310, 6821, 7287
ZraI GACGTC 2 cut(s) 2030, 2126
Zsp2I ATGCAT 4 cut(s) 564, 1582, 3427, 7428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.