Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000979

Physical Location & Seq

Genomic Coordinates Reverse (-)

27305846 .. 27306888

Gene Structure 1043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g32081.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCCACTGAAATCAGGTTCTTGCACCAATCAGATTGCCGCTTTGTCGCTTGGACCAACACGACCTCCATGTCCTTCAATGTTATTGCTTCCTCTCCAACCAGATTTGTTGGAATTTGAGCAAAAGAGAGGACATGTTGCATCAGCTGTGGAGTGCTACATGAAAGAATTTGGAGCCACAGAAGAAGAAACAATAATCGAATTGCGTAGTAAAGTAAGTGACGCATGGAAGGAGATAAGCGAATCGTTCCTGGTTCCTAATGATGTTTCAAGGCCACTGCTGACTCGAATTCTTAATTTTGCATGTGTTATGGATGTTGTTTACAAGTATGAAGATGGTTACACTACTCAGCATGGCATGCTCAAGGATCTGACCACTTCTGTACTTATCGAACAAGTGCATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00909 map00909

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

136

Amino Acids

15.1

Weight (kDa)

5.0

Isoelectric Point (pI)

61.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth_C	PF03936	38 - 78	8.5e-11	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	38 - 78	3.7e-09	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000979)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22161 FvH4_3g32081 FvH4_3g32180 FvH4_5g06450 FvH4_6g19300
malus_domestica	MD12G1162800.v1.1 MD12G1163200.v1.1 MD12G1163600.v1.1
prunus_persica	Prupe.4G194000_v2.0.a1 Prupe.4G194700_v2.0.a1 Prupe.4G198800_v2.0.a1
pyrus_communis	pycom07g03220
rosa_chinensis	RchiOBHm_Chr0c17g0499941 RchiOBHm_Chr1g0326031 RchiOBHm_Chr1g0326301 RchiOBHm_Chr4g0406361 RchiOBHm_Chr6g0274881
rosa_laevigata	RLG00000008723 RLG00000014166 RLG00000033702
rosa_multiflora	Rmu_sc0000149.1_g000030 Rmu_sc0001353.1_g000008 Rmu_sc0006272.1_g000013 Rmu_sc0008056.1_g000001 Rmu_sc0011910.1_g000003 Rmu_sc0019563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044360 Rroxscaffold_2G00123050 Rroxscaffold_2G00127900 Rroxscaffold_2G00128770 Rroxscaffold_3G00225480 Rroxscaffold_3G00235290 Rroxscaffold_4G00317180 Rroxscaffold_4G00320650 Rroxscaffold_4G00320660 Rroxscaffold_6G00393300
rosa_samantha	Rh1BG062100 Rh1CG074300 Rh1DG080600 Rh1DG081600 Rh3BG331000 Rh3CG216000 Rh3CG216300 Rh3CG216700 Rh3DG216700 Rh3DG328000 Rh3DG328300 Rh4CG145600 Rh5CG282500 Rh5DG271000 Rh5DG275500 Rh5DG312500 Rh5DG416000 Rh5DG454000 Rh6BG141200 Rh6BG178000 Rh6BG178100 Rh6BG178200 Rh6CG137600 Rh6CG174100 Rh6CG205100 Rh6CG272400 Rh6DG195900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	69
AciI	CCGC	1 cut(s)	39
AclWI	GGATC	1 cut(s)	375
AcsI	RAATTY	3 cut(s)	113, 167, 288
AfaI	GTAC	1 cut(s)	384
AflIII	ACRYGT	1 cut(s)	133
AgsI	TTSAA	2 cut(s)	78, 270
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
AlwI	GGATC	1 cut(s)	375
AoxI	GGCC	1 cut(s)	272
ApoI	RAATTY	3 cut(s)	113, 167, 288
AspS9I	GGNCC	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	53
BccI	CCATC	1 cut(s)	329
BciT130I	CCWGG	1 cut(s)	251
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
Bme1390I	CCNGG	1 cut(s)	251
Bme18I	GGWCC	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	2 cut(s)	175, 255
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	347
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
BseBI	CCWGG	1 cut(s)	251
BseGI	GGATG	1 cut(s)	319
BseMII	CTCAG	1 cut(s)	362
BshFI	GGCC	1 cut(s)	274
BsnI	GGCC	1 cut(s)	274
Bsp143I	GATC	1 cut(s)	367
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	1 cut(s)	274
BspCNI	CTCAG	1 cut(s)	361
BspLI	GGNNCC	2 cut(s)	175, 255
BspPI	GGATC	1 cut(s)	375
BssMI	GATC	1 cut(s)	367
Bst2UI	CCWGG	1 cut(s)	251
BstAPI	GCANNNNNTGC	1 cut(s)	358
BstC8I	GCNNGC	1 cut(s)	359
BstDEI	CTNAG	1 cut(s)	348
BstF5I	GGATG	1 cut(s)	319
BstKTI	GATC	1 cut(s)	370
BstMBI	GATC	1 cut(s)	367
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstNI	CCWGG	1 cut(s)	251
BstNSI	RCATGY	4 cut(s)	137, 306, 361, 404
BstSCI	CCNGG	1 cut(s)	249
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	319
BtsI	GCAGTG	1 cut(s)	275
BtsIMutI	CAGTG	2 cut(s)	5, 275
Cac8I	GCNNGC	1 cut(s)	359
Cfr13I	GGNCC	1 cut(s)	53
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	383
CviAII	CATG	8 cut(s)	69, 134, 160, 225, 303, 353, 358, 401
CviJI	RGCY	3 cut(s)	146, 176, 274
CviKI_1	RGCY	3 cut(s)	146, 176, 274
CviQI	GTAC	1 cut(s)	383
DdeI	CTNAG	1 cut(s)	348
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
DrdI	GACNNNNNNGTC	1 cut(s)	69
DseDI	GACNNNNNNGTC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	288
EcoRII	CCWGG	1 cut(s)	249
FaeI	CATG	8 cut(s)	72, 137, 163, 228, 306, 356, 361, 404
FatI	CATG	8 cut(s)	68, 133, 159, 224, 302, 352, 357, 400
Fnu4HI	GCNGC	1 cut(s)	39
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	1 cut(s)	39
GluI	GCNGC	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	274
HgaI	GACGC	1 cut(s)	230
Hin1II	CATG	8 cut(s)	72, 137, 163, 228, 306, 356, 361, 404
HinfI	GANTC	2 cut(s)	242, 283
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	2 cut(s)	33, 372
Hpy8I	GTNNAC	1 cut(s)	322
HpyAV	CCTTC	2 cut(s)	84, 223
HpyCH4V	TGCA	4 cut(s)	24, 140, 302, 400
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpyF3I	CTNAG	1 cut(s)	348
Hsp92II	CATG	8 cut(s)	72, 137, 163, 228, 306, 356, 361, 404
Kzo9I	GATC	1 cut(s)	367
LmnI	GCTCC	1 cut(s)	173
LpnPI	CCDG	3 cut(s)	114, 236, 263
LweI	GCATC	1 cut(s)	149
MaeIII	GTNAC	2 cut(s)	218, 338
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	3 cut(s)	194, 197, 344
MflI	RGATCY	1 cut(s)	367
MluCI	AATT	5 cut(s)	113, 167, 200, 288, 295
MlyI	GAGTC	1 cut(s)	277
MmeI	TCCRAC	2 cut(s)	90, 121
MnlI	CCTC	3 cut(s)	75, 102, 122
MseI	TTAA	1 cut(s)	294
MspA1I	CMGCKG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	1 cut(s)	358
NdeII	GATC	1 cut(s)	367
NlaIII	CATG	8 cut(s)	72, 137, 163, 228, 306, 356, 361, 404
NlaIV	GGNNCC	2 cut(s)	175, 255
NmuCI	GTSAC	1 cut(s)	218
NspI	RCATGY	4 cut(s)	137, 306, 361, 404
PaeI	GCATGC	1 cut(s)	361
PciI	ACATGT	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	242
PkrI	GCNGC	1 cut(s)	40
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PscI	ACATGT	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	2 cut(s)	175, 255
PspPI	GGNCC	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	367
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	1 cut(s)	384
RsaNI	GTAC	1 cut(s)	383
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	1 cut(s)	39
Sau3AI	GATC	1 cut(s)	367
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	251
SetI	ASST	3 cut(s)	19, 67, 148
SfaNI	GCATC	1 cut(s)	149
SinI	GGWCC	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
SphI	GCATGC	1 cut(s)	361
Sse9I	AATT	5 cut(s)	113, 167, 200, 288, 295
SsiI	CCGC	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	249
TaqI	TCGA	3 cut(s)	198, 286, 390
TasI	AATT	5 cut(s)	113, 167, 200, 288, 295
TatI	WGTACW	1 cut(s)	382
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	2 cut(s)	12, 282
TseFI	GTSAC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	2 cut(s)	176, 345
TspRI	CASTG	2 cut(s)	12, 282
VpaK11BI	GGWCC	1 cut(s)	53
XapI	RAATTY	3 cut(s)	113, 167, 288
XceI	RCATGY	4 cut(s)	137, 306, 361, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.