Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000979

Physical Location & Seq

Genomic Coordinates Forward (+)

27428730 .. 27429284

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g32180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGAAGAATATATGGCCCTATCAATACGTTCCTCAGGCTACCCGCTGCTTACAACAACTTCTTGCATTGGAATGGAAGATACTGTTACACAAGAAAACTTCGATTGGCTAGCCACTATACCCAGGGCTTTGAAAGGGGCTGCAATAGTTGCTCGACTTATGAATGACATAGTGTCCCACAAGTTTGAGCAAAAGAGAGGGCATGTTTCGTCAGCTGTGGAATGCTACATGAAAGAATTTGGTGTCACAGAAGAAGAAGCATCAATCGGATTGTGTAGACAAGCCAGCGATGCGTGGAAGGACATAAACGAATCGCTCCTCCTCCCTAATGCTGTTTCAAGGCCAGTGCTAACTCGAATTCATTGTATAACATGTGCCATAGATGTTGTTTACAAGTATGGAGACGGTTACACTGCTCCAGATGATACGCTCAAAAATCTTATAGCTTCTACACTTATCGAACAAGTTCCTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00909 map00909

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

159

Amino Acids

17.49

Weight (kDa)

4.91

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth_C	PF03936	1 - 101	2.3e-31	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	1 - 101	3.3e-29	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000979)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22161 FvH4_3g32081 FvH4_3g32180 FvH4_5g06450 FvH4_6g19300
malus_domestica	MD12G1162800.v1.1 MD12G1163200.v1.1 MD12G1163600.v1.1
prunus_persica	Prupe.4G194000_v2.0.a1 Prupe.4G194700_v2.0.a1 Prupe.4G198800_v2.0.a1
pyrus_communis	pycom07g03220
rosa_chinensis	RchiOBHm_Chr0c17g0499941 RchiOBHm_Chr1g0326031 RchiOBHm_Chr1g0326301 RchiOBHm_Chr4g0406361 RchiOBHm_Chr6g0274881
rosa_laevigata	RLG00000008723 RLG00000014166 RLG00000033702
rosa_multiflora	Rmu_sc0000149.1_g000030 Rmu_sc0001353.1_g000008 Rmu_sc0006272.1_g000013 Rmu_sc0008056.1_g000001 Rmu_sc0011910.1_g000003 Rmu_sc0019563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044360 Rroxscaffold_2G00123050 Rroxscaffold_2G00127900 Rroxscaffold_2G00128770 Rroxscaffold_3G00225480 Rroxscaffold_3G00235290 Rroxscaffold_4G00317180 Rroxscaffold_4G00320650 Rroxscaffold_4G00320660 Rroxscaffold_6G00393300
rosa_samantha	Rh1BG062100 Rh1CG074300 Rh1DG080600 Rh1DG081600 Rh3BG331000 Rh3CG216000 Rh3CG216300 Rh3CG216700 Rh3DG216700 Rh3DG328000 Rh3DG328300 Rh4CG145600 Rh5CG282500 Rh5DG271000 Rh5DG275500 Rh5DG312500 Rh5DG416000 Rh5DG454000 Rh6BG141200 Rh6BG178000 Rh6BG178100 Rh6BG178200 Rh6CG137600 Rh6CG174100 Rh6CG205100 Rh6CG272400 Rh6DG195900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	277
AciI	CCGC	1 cut(s)	44
AcsI	RAATTY	2 cut(s)	236, 357
AflIII	ACRYGT	1 cut(s)	371
AgsI	TTSAA	2 cut(s)	133, 339
AhdI	GACNNNNNGTC	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	122
AluBI	AGCT	2 cut(s)	215, 446
AluI	AGCT	2 cut(s)	215, 446
Alw26I	GTCTC	1 cut(s)	396
AoxI	GGCC	2 cut(s)	15, 341
ApeKI	GCWGC	2 cut(s)	46, 140
ApoI	RAATTY	2 cut(s)	236, 357
Asp700I	GAANNNNTTC	1 cut(s)	465
AspS9I	GGNCC	1 cut(s)	16
AsuNHI	GCTAGC	1 cut(s)	109
AxyI	CCTNAGG	1 cut(s)	34
BbvI	GCAGC	2 cut(s)	33, 127
BciT130I	CCWGG	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	396
BfaI	CTAG	1 cut(s)	110
BisI	GCNGC	2 cut(s)	47, 141
BlsI	GCNGC	2 cut(s)	48, 142
Bme1390I	CCNGG	1 cut(s)	124
BmeRI	GACNNNNNGTC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	124
BmsI	GCATC	2 cut(s)	269, 280
BmtI	GCTAGC	1 cut(s)	113
BpmI	CTGGAG	1 cut(s)	402
BsaJI	CCNNGG	2 cut(s)	122, 123
Bse1I	ACTGG	1 cut(s)	344
Bse21I	CCTNAGG	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	124
BseDI	CCNNGG	2 cut(s)	122, 123
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	344
BseRI	GAGGAG	2 cut(s)	308, 311
BseXI	GCAGC	2 cut(s)	33, 127
BshFI	GGCC	2 cut(s)	17, 343
BslFI	GGGAC	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	396
BsmBI	CGTCTC	1 cut(s)	396
BsmFI	GGGAC	1 cut(s)	160
BsmI	GAATGC	1 cut(s)	227
BsnI	GGCC	2 cut(s)	17, 343
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	2 cut(s)	17, 343
BspCNI	CTCAG	1 cut(s)	47
BspOI	GCTAGC	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	344
BssECI	CCNNGG	2 cut(s)	122, 123
Bst2UI	CCWGG	1 cut(s)	124
Bst4CI	ACNGT	2 cut(s)	85, 407
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	111, 286
BstDEI	CTNAG	1 cut(s)	34
BstMAI	GTCTC	1 cut(s)	396
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 290
BstNI	CCWGG	1 cut(s)	124
BstNSI	RCATGY	2 cut(s)	206, 375
BstSCI	CCNGG	1 cut(s)	122
BstV1I	GCAGC	2 cut(s)	33, 127
Bsu36I	CCTNAGG	1 cut(s)	34
BsuRI	GGCC	2 cut(s)	17, 343
BtgZI	GCGATG	1 cut(s)	303
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	2 cut(s)	351, 411
Cac8I	GCNNGC	2 cut(s)	111, 286
Cfr13I	GGNCC	1 cut(s)	16
CviAII	CATG	3 cut(s)	203, 229, 372
DdeI	CTNAG	1 cut(s)	34
DriI	GACNNNNNGTC	1 cut(s)	172
Eam1105I	GACNNNNNGTC	1 cut(s)	172
Eco81I	CCTNAGG	1 cut(s)	34
EcoRI	GAATTC	1 cut(s)	357
EcoRII	CCWGG	1 cut(s)	122
Esp3I	CGTCTC	1 cut(s)	396
FaeI	CATG	3 cut(s)	206, 232, 375
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	3 cut(s)	202, 228, 371
FauI	CCCGC	1 cut(s)	51
FblI	GTMKAC	1 cut(s)	277
Fnu4HI	GCNGC	2 cut(s)	47, 141
Fsp4HI	GCNGC	2 cut(s)	47, 141
FspBI	CTAG	1 cut(s)	110
GluI	GCNGC	2 cut(s)	47, 141
GsuI	CTGGAG	1 cut(s)	402
HaeIII	GGCC	2 cut(s)	17, 343
Hin1II	CATG	3 cut(s)	206, 232, 375
HinfI	GANTC	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	278, 391
Hpy188I	TCNGA	1 cut(s)	269
Hpy188III	TCNNGA	1 cut(s)	419
Hpy8I	GTNNAC	2 cut(s)	278, 391
HpyAV	CCTTC	1 cut(s)	292
HpyCH4III	ACNGT	2 cut(s)	85, 407
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	2 cut(s)	66, 143
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 290
HpyF3I	CTNAG	1 cut(s)	34
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	3 cut(s)	206, 232, 375
LmnI	GCTCC	2 cut(s)	321, 421
LpnPI	CCDG	6 cut(s)	21, 109, 136, 298, 357, 432
Lsp1109I	GCAGC	2 cut(s)	33, 127
LweI	GCATC	2 cut(s)	269, 280
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	3 cut(s)	85, 244, 407
MboII	GAAGA	4 cut(s)	17, 89, 263, 266
MluCI	AATT	2 cut(s)	236, 357
MnlI	CCTC	4 cut(s)	43, 191, 329, 332
MroXI	GAANNNNTTC	1 cut(s)	465
MslI	CAYNNNNRTG	1 cut(s)	71
MspA1I	CMGCKG	2 cut(s)	46, 215
MspR9I	CCNGG	1 cut(s)	124
Mva1269I	GAATGC	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	124
MwoI	GCNNNNNNNGC	2 cut(s)	149, 290
NheI	GCTAGC	1 cut(s)	109
NlaIII	CATG	3 cut(s)	206, 232, 375
NmuCI	GTSAC	1 cut(s)	244
NspI	RCATGY	2 cut(s)	206, 375
PasI	CCCWGGG	1 cut(s)	123
PciI	ACATGT	1 cut(s)	371
PctI	GAATGC	1 cut(s)	227
PdmI	GAANNNNTTC	1 cut(s)	465
PfeI	GAWTC	1 cut(s)	311
PkrI	GCNGC	2 cut(s)	48, 142
PscI	ACATGT	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	122
PspGI	CCWGG	1 cut(s)	122
PspPI	GGNCC	1 cut(s)	16
PvuII	CAGCTG	1 cut(s)	215
RseI	CAYNNNNRTG	1 cut(s)	71
SatI	GCNGC	2 cut(s)	47, 141
Sau96I	GGNCC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	124
SetI	ASST	3 cut(s)	31, 217, 448
SfaNI	GCATC	2 cut(s)	269, 280
SmiMI	CAYNNNNRTG	1 cut(s)	71
Sse9I	AATT	2 cut(s)	236, 357
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	122
TaaI	ACNGT	2 cut(s)	85, 407
TaiI	ACGT	1 cut(s)	31
TaqI	TCGA	4 cut(s)	102, 154, 355, 459
TasI	AATT	2 cut(s)	236, 357
TfiI	GAWTC	1 cut(s)	311
TscAI	CASTG	2 cut(s)	351, 418
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	2 cut(s)	46, 140
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	3 cut(s)	176, 245, 350
TspRI	CASTG	2 cut(s)	351, 418
XapI	RAATTY	2 cut(s)	236, 357
XceI	RCATGY	2 cut(s)	206, 375
XmiI	GTMKAC	1 cut(s)	277
XmnI	GAANNNNTTC	1 cut(s)	465
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.