Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011910.1

Orthogroup ID

OG0000979

Physical Location & Seq

Genomic Coordinates Forward (+)

7820 .. 8908

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011910.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atggattcattgcctgactatatgaaagtttgctatgaggcattgttgaatgtctacactgaaattaaagatgagcttgcaaaggagggaaactcgtatcgcatcaactatgcaatagaagcagtaagcctcataaggtctcagcgagagctgactgatttagtgttttatggtttatgggagccatgtggatcttacttagaggaagccaaatggttccaccaaaagtacacaccgaaaacctttgatgagtatatgtcggtggcacttgtatcatccggcatgtttatggtggaagcaacatttatcgttgcaatagctggtgatattgttacaagagattccttggactggttgttcagtgaccctaaatttgtaaaggcttcatcgataattgggagactcttgaatgacatccgaagccacaagcttgagcaaaagagaggacatgttgtctcagctgtggaatgctatatgaaagaacactgtgctacagaagaagtagcggtgattgaactgactaaacatgtaaataatgcatggacggatgtaaacgaaggtttgcttcaccctatcgctattgtccctaggcccatactattgctaattctcaattttctacgcgtaactgatgttatatacaagcatgaagatggttatactcatggtggagttgtgctcaaggattatataacttctcttcttgtcgaacatgttccaatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00909 map00909

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

241

Amino Acids

27.53

Weight (kDa)

5.27

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000979)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22161 FvH4_3g32081 FvH4_3g32180 FvH4_5g06450 FvH4_6g19300
malus_domestica	MD12G1162800.v1.1 MD12G1163200.v1.1 MD12G1163600.v1.1
prunus_persica	Prupe.4G194000_v2.0.a1 Prupe.4G194700_v2.0.a1 Prupe.4G198800_v2.0.a1
pyrus_communis	pycom07g03220
rosa_chinensis	RchiOBHm_Chr0c17g0499941 RchiOBHm_Chr1g0326031 RchiOBHm_Chr1g0326301 RchiOBHm_Chr4g0406361 RchiOBHm_Chr6g0274881
rosa_laevigata	RLG00000008723 RLG00000014166 RLG00000033702
rosa_multiflora	Rmu_sc0000149.1_g000030 Rmu_sc0001353.1_g000008 Rmu_sc0006272.1_g000013 Rmu_sc0008056.1_g000001 Rmu_sc0011910.1_g000003 Rmu_sc0019563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044360 Rroxscaffold_2G00123050 Rroxscaffold_2G00127900 Rroxscaffold_2G00128770 Rroxscaffold_3G00225480 Rroxscaffold_3G00235290 Rroxscaffold_4G00317180 Rroxscaffold_4G00320650 Rroxscaffold_4G00320660 Rroxscaffold_6G00393300
rosa_samantha	Rh1BG062100 Rh1CG074300 Rh1DG080600 Rh1DG081600 Rh3BG331000 Rh3CG216000 Rh3CG216300 Rh3CG216700 Rh3DG216700 Rh3DG328000 Rh3DG328300 Rh4CG145600 Rh5CG282500 Rh5DG271000 Rh5DG275500 Rh5DG312500 Rh5DG416000 Rh5DG454000 Rh6BG141200 Rh6BG178000 Rh6BG178100 Rh6BG178200 Rh6CG137600 Rh6CG174100 Rh6CG205100 Rh6CG272400 Rh6DG195900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	54
AccII	CGCG	1 cut(s)	624
AciI	CCGC	1 cut(s)	506
AclWI	GGATC	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	371
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	1 cut(s)	351
AflIII	ACRYGT	4 cut(s)	448, 526, 622, 712
AgsI	TTSAA	3 cut(s)	49, 409, 515
AhdI	GACNNNNNGTC	1 cut(s)	452
AloI	GAACNNNNNNTCC	2 cut(s)	341, 373
AluBI	AGCT	5 cut(s)	76, 151, 320, 430, 461
AluI	AGCT	5 cut(s)	76, 151, 320, 430, 461
Alw21I	GWGCWC	1 cut(s)	681
Alw26I	GTCTC	3 cut(s)	144, 394, 460
AlwI	GGATC	1 cut(s)	199
AoxI	GGCC	1 cut(s)	590
ApoI	RAATTY	1 cut(s)	371
ArsI	GACNNNNNNTTYG	2 cut(s)	356, 388
Asp700I	GAANNNNTTC	1 cut(s)	714
AspA2I	CCTAGG	1 cut(s)	587
AspS9I	GGNCC	1 cut(s)	591
AsuHPI	GGTGA	3 cut(s)	335, 520, 560
AvrII	CCTAGG	1 cut(s)	587
Bbv12I	GWGCWC	1 cut(s)	681
BccI	CCATC	1 cut(s)	647
BcoDI	GTCTC	3 cut(s)	144, 394, 460
BfaI	CTAG	1 cut(s)	588
BfmI	CTRYAG	1 cut(s)	492
BlnI	CCTAGG	1 cut(s)	587
BmeRI	GACNNNNNGTC	1 cut(s)	452
BmgT120I	GGNCC	1 cut(s)	591
BmiI	GGNNCC	2 cut(s)	183, 218
BmsI	GCATC	1 cut(s)	111
BplI	GAGNNNNNCTC	4 cut(s)	77, 109, 663, 695
BpuEI	CTTGAG	2 cut(s)	452, 665
Bsa29I	ATCGAT	1 cut(s)	389
BsaI	GGTCTC	1 cut(s)	144
BsaJI	CCNNGG	2 cut(s)	345, 587
Bsc4I	CCNNNNNNNGG	1 cut(s)	351
Bse1I	ACTGG	1 cut(s)	356
Bse3DI	GCAATG	1 cut(s)	8
BseCI	ATCGAT	1 cut(s)	389
BseDI	CCNNGG	2 cut(s)	345, 587
BseGI	GGATG	3 cut(s)	275, 414, 553
BseLI	CCNNNNNNNGG	1 cut(s)	351
BseMI	GCAATG	1 cut(s)	8
BseMII	CTCAG	2 cut(s)	155, 471
BseNI	ACTGG	1 cut(s)	356
Bsh1236I	CGCG	1 cut(s)	624
BshFI	GGCC	1 cut(s)	592
BshVI	ATCGAT	1 cut(s)	389
BsiHKAI	GWGCWC	1 cut(s)	681
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	569
BslI	CCNNNNNNNGG	1 cut(s)	351
BsmAI	GTCTC	3 cut(s)	144, 394, 460
BsmFI	GGGAC	1 cut(s)	569
BsmI	GAATGC	1 cut(s)	473
BsnI	GGCC	1 cut(s)	592
Bso31I	GGTCTC	1 cut(s)	144
Bsp1286I	GDGCHC	1 cut(s)	681
Bsp143I	GATC	1 cut(s)	191
BspACI	CCGC	1 cut(s)	506
BspANI	GGCC	1 cut(s)	592
BspCNI	CTCAG	2 cut(s)	154, 470
BspDI	ATCGAT	1 cut(s)	389
BspFNI	CGCG	1 cut(s)	624
BspLI	GGNNCC	2 cut(s)	183, 218
BspPI	GGATC	1 cut(s)	199
BspTNI	GGTCTC	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	356
BssECI	CCNNGG	2 cut(s)	345, 587
BssMI	GATC	1 cut(s)	191
BssT1I	CCWWGG	2 cut(s)	345, 587
Bst4CI	ACNGT	1 cut(s)	488
Bst6I	CTCTTC	1 cut(s)	705
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	3 cut(s)	141, 199, 457
BstF5I	GGATG	3 cut(s)	275, 414, 553
BstFNI	CGCG	1 cut(s)	624
BstKTI	GATC	1 cut(s)	194
BstMAI	GTCTC	3 cut(s)	144, 394, 460
BstMBI	GATC	1 cut(s)	191
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNSI	RCATGY	4 cut(s)	286, 452, 530, 716
BstSFI	CTRYAG	1 cut(s)	492
BstUI	CGCG	1 cut(s)	624
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
Bsu15I	ATCGAT	1 cut(s)	389
BsuRI	GGCC	1 cut(s)	592
BsuTUI	ATCGAT	1 cut(s)	389
BtsCI	GGATG	3 cut(s)	275, 414, 553
BtsIMutI	CAGTG	3 cut(s)	57, 367, 484
Cac8I	GCNNGC	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	591
ClaI	ATCGAT	1 cut(s)	389
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	8 cut(s)	186, 283, 449, 527, 540, 647, 665, 713
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	3 cut(s)	141, 199, 457
DpnI	GATC	1 cut(s)	193
DpnII	GATC	1 cut(s)	191
DriI	GACNNNNNGTC	1 cut(s)	452
Eam1104I	CTCTTC	1 cut(s)	705
Eam1105I	GACNNNNNGTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	705
Eco130I	CCWWGG	2 cut(s)	345, 587
Eco31I	GGTCTC	1 cut(s)	144
EcoT14I	CCWWGG	2 cut(s)	345, 587
EcoT22I	ATGCAT	1 cut(s)	541
ErhI	CCWWGG	2 cut(s)	345, 587
FaeI	CATG	8 cut(s)	189, 286, 452, 530, 543, 650, 668, 716
FalI	AAGNNNNNCTT	4 cut(s)	60, 92, 549, 581
FaqI	GGGAC	1 cut(s)	569
FatI	CATG	8 cut(s)	185, 282, 448, 526, 539, 646, 664, 712
FblI	GTMKAC	1 cut(s)	54
FokI	GGATG	3 cut(s)	262, 401, 560
FspBI	CTAG	1 cut(s)	588
HaeIII	GGCC	1 cut(s)	592
HapII	CCGG	1 cut(s)	279
Hin1II	CATG	8 cut(s)	189, 286, 452, 530, 543, 650, 668, 716
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	3 cut(s)	5, 341, 402
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	3 cut(s)	335, 520, 560
Hpy166II	GTNNAC	3 cut(s)	55, 231, 553
Hpy188I	TCNGA	1 cut(s)	419
Hpy188III	TCNNGA	1 cut(s)	406
Hpy8I	GTNNAC	3 cut(s)	55, 231, 553
HpyAV	CCTTC	1 cut(s)	551
HpyCH4III	ACNGT	1 cut(s)	488
HpyCH4V	TGCA	4 cut(s)	80, 113, 314, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	3 cut(s)	141, 199, 457
Hsp92II	CATG	8 cut(s)	189, 286, 452, 530, 543, 650, 668, 716
Kzo9I	GATC	1 cut(s)	191
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	4 cut(s)	27, 292, 306, 337
LweI	GCATC	1 cut(s)	111
MaeI	CTAG	1 cut(s)	588
MaeIII	GTNAC	3 cut(s)	331, 362, 625
MalI	GATC	1 cut(s)	193
MboI	GATC	1 cut(s)	191
MboII	GAAGA	3 cut(s)	509, 662, 692
MflI	RGATCY	1 cut(s)	191
MhlI	GDGCHC	1 cut(s)	681
MluCI	AATT	5 cut(s)	63, 371, 393, 606, 613
MluI	ACGCGT	1 cut(s)	622
MlyI	GAGTC	1 cut(s)	396
MnlI	CCTC	5 cut(s)	31, 79, 140, 196, 437
Mph1103I	ATGCAT	1 cut(s)	541
MroXI	GAANNNNTTC	1 cut(s)	714
MseI	TTAA	1 cut(s)	66
MslI	CAYNNNNRTG	2 cut(s)	287, 651
MspA1I	CMGCKG	1 cut(s)	461
MspI	CCGG	1 cut(s)	279
Mva1269I	GAATGC	1 cut(s)	473
MvnI	CGCG	1 cut(s)	624
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	1 cut(s)	191
NlaIII	CATG	8 cut(s)	189, 286, 452, 530, 543, 650, 668, 716
NlaIV	GGNNCC	2 cut(s)	183, 218
NmuCI	GTSAC	1 cut(s)	362
NsiI	ATGCAT	1 cut(s)	541
NspI	RCATGY	4 cut(s)	286, 452, 530, 716
PciI	ACATGT	3 cut(s)	448, 526, 712
PctI	GAATGC	1 cut(s)	473
PdmI	GAANNNNTTC	1 cut(s)	714
PfeI	GAWTC	2 cut(s)	5, 341
PleI	GAGTC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	396
PscI	ACATGT	3 cut(s)	448, 526, 712
PspN4I	GGNNCC	2 cut(s)	183, 218
PspPI	GGNCC	1 cut(s)	591
PsuI	RGATCY	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	461
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
RseI	CAYNNNNRTG	2 cut(s)	287, 651
SaqAI	TTAA	1 cut(s)	66
Sau3AI	GATC	1 cut(s)	191
Sau96I	GGNCC	1 cut(s)	591
SchI	GAGTC	1 cut(s)	396
SduI	GDGCHC	1 cut(s)	681
SetI	ASST	8 cut(s)	78, 140, 153, 245, 322, 432, 463, 562
SfaNI	GCATC	1 cut(s)	111
SfcI	CTRYAG	1 cut(s)	492
SmiMI	CAYNNNNRTG	2 cut(s)	287, 651
SmlI	CTYRAG	2 cut(s)	431, 680
SmoI	CTYRAG	2 cut(s)	431, 680
Sse9I	AATT	5 cut(s)	63, 371, 393, 606, 613
SsiI	CCGC	1 cut(s)	506
SspMI	CTAG	1 cut(s)	588
StyI	CCWWGG	2 cut(s)	345, 587
TaaI	ACNGT	1 cut(s)	488
TaqI	TCGA	2 cut(s)	389, 708
TasI	AATT	5 cut(s)	63, 371, 393, 606, 613
TatI	WGTACW	1 cut(s)	228
TfiI	GAWTC	2 cut(s)	5, 341
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TscAI	CASTG	3 cut(s)	64, 367, 491
TseFI	GTSAC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	4 cut(s)	38, 375, 491, 663
TspGWI	ACGGA	1 cut(s)	560
TspRI	CASTG	3 cut(s)	64, 367, 491
XapI	RAATTY	1 cut(s)	371
XceI	RCATGY	4 cut(s)	286, 452, 530, 716
XmaJI	CCTAGG	1 cut(s)	587
XmiI	GTMKAC	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	714
XspI	CTAG	1 cut(s)	588
Zsp2I	ATGCAT	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.