Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000979

Physical Location & Seq

Genomic Coordinates Reverse (-)

35791393 .. 35792107

Gene Structure 715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008723

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGGTGATATTGCTACACAAGACTCCTTCGATTGGTTGGCCACTTATCCCAAGGCTGTAAAAGGGGTTGCAACAATTTGTCGGCTCATGGATGACATAGTGGACCACCAGTTTGAGCAAGAGAGAGGAAATGATACCTCAGCTGTGATCTGCTACATGAAAGAATATGGTGCCAACGCAGAAGAAGCAATAATTGAATTGCGTAGAAAAATTAGTGACGCGTGGAAGGACATAAACGAATTGTTCCTCCTCCATAATGCTGTTCCAAGACCATTGCTAACTCGAATTCTGAACCTTGCATGTGCTAAGGACGTTGTATACAAGTACGGAGATGGTTACACTACTCATTATGATACTGTGCTCAAGGATTTTATAGTTTCTACACTTGTCCAACCAGTGCCTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00909 map00909

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

136

Amino Acids

15.3

Weight (kDa)

4.94

Isoelectric Point (pI)

39.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth_C	PF03936	1 - 77	3.3e-24	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	1 - 77	1.4e-19	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000979)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22161 FvH4_3g32081 FvH4_3g32180 FvH4_5g06450 FvH4_6g19300
malus_domestica	MD12G1162800.v1.1 MD12G1163200.v1.1 MD12G1163600.v1.1
prunus_persica	Prupe.4G194000_v2.0.a1 Prupe.4G194700_v2.0.a1 Prupe.4G198800_v2.0.a1
pyrus_communis	pycom07g03220
rosa_chinensis	RchiOBHm_Chr0c17g0499941 RchiOBHm_Chr1g0326031 RchiOBHm_Chr1g0326301 RchiOBHm_Chr4g0406361 RchiOBHm_Chr6g0274881
rosa_laevigata	RLG00000008723 RLG00000014166 RLG00000033702
rosa_multiflora	Rmu_sc0000149.1_g000030 Rmu_sc0001353.1_g000008 Rmu_sc0006272.1_g000013 Rmu_sc0008056.1_g000001 Rmu_sc0011910.1_g000003 Rmu_sc0019563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044360 Rroxscaffold_2G00123050 Rroxscaffold_2G00127900 Rroxscaffold_2G00128770 Rroxscaffold_3G00225480 Rroxscaffold_3G00235290 Rroxscaffold_4G00317180 Rroxscaffold_4G00320650 Rroxscaffold_4G00320660 Rroxscaffold_6G00393300
rosa_samantha	Rh1BG062100 Rh1CG074300 Rh1DG080600 Rh1DG081600 Rh3BG331000 Rh3CG216000 Rh3CG216300 Rh3CG216700 Rh3DG216700 Rh3DG328000 Rh3DG328300 Rh4CG145600 Rh5CG282500 Rh5DG271000 Rh5DG275500 Rh5DG312500 Rh5DG416000 Rh5DG454000 Rh6BG141200 Rh6BG178000 Rh6BG178100 Rh6BG178200 Rh6CG137600 Rh6CG174100 Rh6CG205100 Rh6CG272400 Rh6DG195900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	170
AccI	GTMKAC	1 cut(s)	318
AccII	CGCG	1 cut(s)	221
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	285
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	1 cut(s)	33
AflIII	ACRYGT	1 cut(s)	219
AgsI	TTSAA	1 cut(s)	197
AluBI	AGCT	1 cut(s)	143
AluI	AGCT	1 cut(s)	143
Alw21I	GWGCWC	1 cut(s)	363
AlwNI	CAGNNNCTG	1 cut(s)	401
AoxI	GGCC	1 cut(s)	39
ApoI	RAATTY	1 cut(s)	285
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
AspS9I	GGNCC	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	103
BalI	TGGCCA	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	363
BbvCI	CCTCAGC	1 cut(s)	139
BccI	CCATC	1 cut(s)	326
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	172
Bpu10I	CCTNAGC	2 cut(s)	139, 306
BpuEI	CTTGAG	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	1 cut(s)	33
Bse1I	ACTGG	2 cut(s)	109, 395
Bse3DI	GCAATG	1 cut(s)	272
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	33
BseMI	GCAATG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	2 cut(s)	109, 395
BseRI	GAGGAG	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	221
BshFI	GGCC	1 cut(s)	41
BshNI	GGYRCC	1 cut(s)	170
BsiHKAI	GWGCWC	1 cut(s)	363
BslI	CCNNNNNNNGG	1 cut(s)	33
BsnI	GGCC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	1 cut(s)	147
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	1 cut(s)	152
BspFNI	CGCG	1 cut(s)	221
BspLI	GGNNCC	1 cut(s)	172
BspT107I	GGYRCC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	109, 395
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	1 cut(s)	147
BssNAI	GTATAC	1 cut(s)	319
BssT1I	CCWWGG	1 cut(s)	51
Bst1107I	GTATAC	1 cut(s)	319
Bst4CI	ACNGT	1 cut(s)	358
BstDEI	CTNAG	2 cut(s)	139, 306
BstF5I	GGATG	1 cut(s)	97
BstFNI	CGCG	1 cut(s)	221
BstKTI	GATC	1 cut(s)	150
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNSI	RCATGY	1 cut(s)	303
BstUI	CGCG	1 cut(s)	221
BstZ17I	GTATAC	1 cut(s)	319
BsuRI	GGCC	1 cut(s)	41
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	402
CaiI	CAGNNNCTG	1 cut(s)	401
Cfr13I	GGNCC	1 cut(s)	103
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	3 cut(s)	88, 157, 300
CviJI	RGCY	4 cut(s)	41, 56, 85, 143
CviKI_1	RGCY	4 cut(s)	41, 56, 85, 143
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	2 cut(s)	139, 306
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
EaeI	YGGCCR	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	103
EcoRI	GAATTC	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	3 cut(s)	91, 160, 303
FatI	CATG	3 cut(s)	87, 156, 299
FblI	GTMKAC	1 cut(s)	318
FokI	GGATG	1 cut(s)	104
HaeIII	GGCC	1 cut(s)	41
HgaI	GACGC	1 cut(s)	227
Hin1II	CATG	3 cut(s)	91, 160, 303
HinfI	GANTC	1 cut(s)	23
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	2 cut(s)	103, 319
Hpy188I	TCNGA	1 cut(s)	291
Hpy8I	GTNNAC	2 cut(s)	103, 319
HpyAV	CCTTC	2 cut(s)	37, 220
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	2 cut(s)	71, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	2 cut(s)	139, 306
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	3 cut(s)	91, 160, 303
Kzo9I	GATC	1 cut(s)	147
LpnPI	CCDG	1 cut(s)	122
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	2 cut(s)	215, 335
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	1 cut(s)	194
MhlI	GDGCHC	1 cut(s)	363
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	6 cut(s)	75, 192, 197, 210, 239, 285
MluI	ACGCGT	1 cut(s)	219
MluNI	TGGCCA	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	17
MnlI	CCTC	4 cut(s)	119, 148, 257, 260
Mox20I	TGGCCA	1 cut(s)	41
MscI	TGGCCA	1 cut(s)	41
Msp20I	TGGCCA	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	143
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	185
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	3 cut(s)	91, 160, 303
NlaIV	GGNNCC	1 cut(s)	172
NmuCI	GTSAC	1 cut(s)	215
NspI	RCATGY	1 cut(s)	303
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	172
PspPI	GGNCC	1 cut(s)	103
PstNI	CAGNNNCTG	1 cut(s)	401
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	1 cut(s)	103
SchI	GAGTC	1 cut(s)	17
SduI	GDGCHC	1 cut(s)	363
SetI	ASST	4 cut(s)	140, 145, 297, 315
SinI	GGWCC	1 cut(s)	103
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	6 cut(s)	75, 192, 197, 210, 239, 285
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	358
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	2 cut(s)	30, 283
TasI	AATT	6 cut(s)	75, 192, 197, 210, 239, 285
TscAI	CASTG	1 cut(s)	402
TseFI	GTSAC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	1 cut(s)	173
TspGWI	ACGGA	1 cut(s)	342
TspRI	CASTG	1 cut(s)	402
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	1 cut(s)	285
XceI	RCATGY	1 cut(s)	303
XmiI	GTMKAC	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.