Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000979

Physical Location & Seq

Genomic Coordinates Forward (+)

20052526 .. 20053378

Gene Structure 853 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG216700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCTGTCCATGCAGATGAAGAATCAAGCCAGGCTCTATTTTGCTGAGGCCAGATGGTTCCACGAAGGATGCACCCCAAGAATGGATGAGTATATGCGTGTTGCGGCATCTTGTATCGGTAACACCTTGCTTTCAGTGGTATCTTTAGTAGATATGGGAGACATTATAACAAAAGAGACATTTGAGTGGTTGACCAATGATCCTAAAATTCTTAGAGCTTCGAATATCATATTTAGGCTTATGGATGACATTGCTGGGCACAAGTTTGAGAAAGAGAGAGGGCATGTTGCTTCTAGTATCGATTGCTACATGAATGAATATGGGGTCTCAGAGCAAGAGACAATTGATGTCTTTAACAAACGAATTGTGGATTCGTGGAAGGATATAAACGAAGACTCAATTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00909 map00909

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

135

Amino Acids

15.62

Weight (kDa)

4.91

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth_C	PF03936	3 - 128	9.1e-44	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	5 - 128	5.7e-36	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000979)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22161 FvH4_3g32081 FvH4_3g32180 FvH4_5g06450 FvH4_6g19300
malus_domestica	MD12G1162800.v1.1 MD12G1163200.v1.1 MD12G1163600.v1.1
prunus_persica	Prupe.4G194000_v2.0.a1 Prupe.4G194700_v2.0.a1 Prupe.4G198800_v2.0.a1
pyrus_communis	pycom07g03220
rosa_chinensis	RchiOBHm_Chr0c17g0499941 RchiOBHm_Chr1g0326031 RchiOBHm_Chr1g0326301 RchiOBHm_Chr4g0406361 RchiOBHm_Chr6g0274881
rosa_laevigata	RLG00000008723 RLG00000014166 RLG00000033702
rosa_multiflora	Rmu_sc0000149.1_g000030 Rmu_sc0001353.1_g000008 Rmu_sc0006272.1_g000013 Rmu_sc0008056.1_g000001 Rmu_sc0011910.1_g000003 Rmu_sc0019563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044360 Rroxscaffold_2G00123050 Rroxscaffold_2G00127900 Rroxscaffold_2G00128770 Rroxscaffold_3G00225480 Rroxscaffold_3G00235290 Rroxscaffold_4G00317180 Rroxscaffold_4G00320650 Rroxscaffold_4G00320660 Rroxscaffold_6G00393300
rosa_samantha	Rh1BG062100 Rh1CG074300 Rh1DG080600 Rh1DG081600 Rh3BG331000 Rh3CG216000 Rh3CG216300 Rh3CG216700 Rh3DG216700 Rh3DG328000 Rh3DG328300 Rh4CG145600 Rh5CG282500 Rh5DG271000 Rh5DG275500 Rh5DG312500 Rh5DG416000 Rh5DG454000 Rh6BG141200 Rh6BG178000 Rh6BG178100 Rh6BG178200 Rh6CG137600 Rh6CG174100 Rh6CG205100 Rh6CG272400 Rh6DG195900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	167
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	1 cut(s)	194
AcsI	RAATTY	1 cut(s)	207
AfiI	CCNNNNNNNGG	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	29
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
Alw26I	GTCTC	4 cut(s)	153, 170, 331, 332
AlwI	GGATC	1 cut(s)	194
AoxI	GGCC	1 cut(s)	48
ApoI	RAATTY	1 cut(s)	207
AsuII	TTCGAA	1 cut(s)	221
BaeGI	GKGCMC	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	399
BbvCI	CCTCAGC	1 cut(s)	45
BccI	CCATC	1 cut(s)	48
BciT130I	CCWGG	1 cut(s)	31
BcoDI	GTCTC	4 cut(s)	153, 170, 331, 332
BfaI	CTAG	1 cut(s)	294
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	59
BmrFI	CCNGG	1 cut(s)	31
BmsI	GCATC	2 cut(s)	59, 116
BpiI	GAAGAC	1 cut(s)	399
Bpu10I	CCTNAGC	1 cut(s)	45
Bpu14I	TTCGAA	1 cut(s)	221
Bsa29I	ATCGAT	1 cut(s)	300
BsaI	GGTCTC	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse3DI	GCAATG	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	31
BseCI	ATCGAT	1 cut(s)	300
BseGI	GGATG	3 cut(s)	74, 91, 250
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	2 cut(s)	36, 342
BseSI	GKGCMC	1 cut(s)	261
BseYI	CCCAGC	1 cut(s)	254
BshFI	GGCC	1 cut(s)	50
BshVI	ATCGAT	1 cut(s)	300
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	4 cut(s)	153, 170, 331, 332
BsnI	GGCC	1 cut(s)	50
Bso31I	GGTCTC	1 cut(s)	331
Bsp119I	TTCGAA	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	1 cut(s)	199
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	2 cut(s)	37, 341
BspDI	ATCGAT	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	59
BspPI	GGATC	1 cut(s)	194
BspT104I	TTCGAA	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	331
BsrDI	GCAATG	1 cut(s)	249
BssMI	GATC	1 cut(s)	199
Bst2UI	CCWGG	1 cut(s)	31
BstBI	TTCGAA	1 cut(s)	221
BstDEI	CTNAG	3 cut(s)	45, 212, 328
BstF5I	GGATG	3 cut(s)	74, 91, 250
BstKTI	GATC	1 cut(s)	202
BstMAI	GTCTC	4 cut(s)	153, 170, 331, 332
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	31
BstNSI	RCATGY	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	29
BstSLI	GKGCMC	1 cut(s)	261
BstV2I	GAAGAC	1 cut(s)	399
Bsu15I	ATCGAT	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	50
BsuTUI	ATCGAT	1 cut(s)	300
BtsCI	GGATG	3 cut(s)	74, 91, 250
BtsIMutI	CAGTG	1 cut(s)	141
ClaI	ATCGAT	1 cut(s)	300
CviAII	CATG	3 cut(s)	10, 284, 310
CviJI	RGCY	5 cut(s)	29, 34, 50, 218, 238
CviKI_1	RGCY	5 cut(s)	29, 34, 50, 218, 238
DdeI	CTNAG	3 cut(s)	45, 212, 328
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
Eco31I	GGTCTC	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	29
FaeI	CATG	3 cut(s)	13, 287, 313
FatI	CATG	3 cut(s)	9, 283, 309
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	3 cut(s)	81, 98, 257
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	1 cut(s)	294
GluI	GCNGC	1 cut(s)	105
GsaI	CCCAGC	1 cut(s)	258
HaeIII	GGCC	1 cut(s)	50
Hin1II	CATG	3 cut(s)	13, 287, 313
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HinfI	GANTC	3 cut(s)	22, 371, 395
Hpy166II	GTNNAC	1 cut(s)	192
Hpy188I	TCNGA	1 cut(s)	331
Hpy8I	GTNNAC	1 cut(s)	192
HpyAV	CCTTC	2 cut(s)	59, 373
HpyCH4V	TGCA	2 cut(s)	13, 72
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	3 cut(s)	45, 212, 328
Hsp92II	CATG	3 cut(s)	13, 287, 313
Kzo9I	GATC	1 cut(s)	199
LpnPI	CCDG	4 cut(s)	16, 43, 64, 240
LweI	GCATC	2 cut(s)	59, 116
MaeI	CTAG	1 cut(s)	294
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	2 cut(s)	31, 404
MfeI	CAATTG	1 cut(s)	342
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	4 cut(s)	207, 342, 363, 399
MlyI	GAGTC	1 cut(s)	389
MnlI	CCTC	2 cut(s)	40, 272
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	2 cut(s)	14, 184
MspR9I	CCNGG	1 cut(s)	31
MunI	CAATTG	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	3 cut(s)	13, 287, 313
NlaIV	GGNNCC	1 cut(s)	59
NspI	RCATGY	1 cut(s)	287
NspV	TTCGAA	1 cut(s)	221
PfeI	GAWTC	2 cut(s)	22, 371
PkrI	GCNGC	1 cut(s)	106
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
PsiI	TTATAA	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	29
PspFI	CCCAGC	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	59
RseI	CAYNNNNRTG	2 cut(s)	14, 184
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	1 cut(s)	199
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	1 cut(s)	31
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	2 cut(s)	128, 220
SfaNI	GCATC	2 cut(s)	59, 116
SfuI	TTCGAA	1 cut(s)	221
SmiMI	CAYNNNNRTG	2 cut(s)	14, 184
Sse9I	AATT	4 cut(s)	207, 342, 363, 399
SsiI	CCGC	1 cut(s)	104
SspMI	CTAG	1 cut(s)	294
StyD4I	CCNGG	1 cut(s)	29
TaqI	TCGA	2 cut(s)	221, 300
TasI	AATT	4 cut(s)	207, 342, 363, 399
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	2 cut(s)	22, 371
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	1 cut(s)	141
TspDTI	ATGAA	4 cut(s)	32, 326, 330, 393
TspRI	CASTG	1 cut(s)	141
XapI	RAATTY	1 cut(s)	207
XceI	RCATGY	1 cut(s)	287
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.