Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000979

Physical Location & Seq

Genomic Coordinates Forward (+)

22210955 .. 22211575

Gene Structure 621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00235290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGAGGAGTATATGCCAGTTAGAGTAGCTTCTGTGGGTACTTGTATGACTGTAGTCATATCTTTACTTGGAATGGAAGATACTATTACCAAGGAAACATTTGAGTGGGTTTTGAAGTACCCTAAAATTGTTAGGGCTTCGAGCCTCATTTTTAGGCTCATGGATGACATTGTGGGGAACAAGCGCGAGAAACAGATCGGGGATGTTGCTTCTAGTATTGATTGCTACATGAATCAATATGCGGTCTCAGAGGAAGAGACAATTGCTGTGTTTAACGAACAAATTCTGGATTCATGGAAGGACATGAATGAGGATTTTCTTCGACCAACTGCTGTGCCAATGTCTGTGCTTTTACGCGTTATTAATTTCGCAAGAGGTGTTGATCTGGTTTACCAAGGAGAAGATGGCTTTACAGATGTTGGGAAAGTAATGAAACATGGTGTTGCTGCACTTTTTGTTGATCCATTGCCACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00909 map00909

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

158

Amino Acids

17.81

Weight (kDa)

4.57

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth_C	PF03936	1 - 101	8e-33	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	1 - 101	2.9e-27	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000979)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22161 FvH4_3g32081 FvH4_3g32180 FvH4_5g06450 FvH4_6g19300
malus_domestica	MD12G1162800.v1.1 MD12G1163200.v1.1 MD12G1163600.v1.1
prunus_persica	Prupe.4G194000_v2.0.a1 Prupe.4G194700_v2.0.a1 Prupe.4G198800_v2.0.a1
pyrus_communis	pycom07g03220
rosa_chinensis	RchiOBHm_Chr0c17g0499941 RchiOBHm_Chr1g0326031 RchiOBHm_Chr1g0326301 RchiOBHm_Chr4g0406361 RchiOBHm_Chr6g0274881
rosa_laevigata	RLG00000008723 RLG00000014166 RLG00000033702
rosa_multiflora	Rmu_sc0000149.1_g000030 Rmu_sc0001353.1_g000008 Rmu_sc0006272.1_g000013 Rmu_sc0008056.1_g000001 Rmu_sc0011910.1_g000003 Rmu_sc0019563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044360 Rroxscaffold_2G00123050 Rroxscaffold_2G00127900 Rroxscaffold_2G00128770 Rroxscaffold_3G00225480 Rroxscaffold_3G00235290 Rroxscaffold_4G00317180 Rroxscaffold_4G00320650 Rroxscaffold_4G00320660 Rroxscaffold_6G00393300
rosa_samantha	Rh1BG062100 Rh1CG074300 Rh1DG080600 Rh1DG081600 Rh3BG331000 Rh3CG216000 Rh3CG216300 Rh3CG216700 Rh3DG216700 Rh3DG328000 Rh3DG328300 Rh4CG145600 Rh5CG282500 Rh5DG271000 Rh5DG275500 Rh5DG312500 Rh5DG416000 Rh5DG454000 Rh6BG141200 Rh6BG178000 Rh6BG178100 Rh6BG178200 Rh6CG137600 Rh6CG174100 Rh6CG205100 Rh6CG272400 Rh6DG195900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	186, 357
AciI	CCGC	1 cut(s)	242
AclWI	GGATC	1 cut(s)	455
AcsI	RAATTY	1 cut(s)	282
AfaI	GTAC	2 cut(s)	40, 119
AflIII	ACRYGT	1 cut(s)	355
AgsI	TTSAA	1 cut(s)	115
AluBI	AGCT	1 cut(s)	29
AluI	AGCT	1 cut(s)	29
Alw26I	GTCTC	2 cut(s)	250, 251
AlwI	GGATC	1 cut(s)	455
ApeKI	GCWGC	1 cut(s)	446
ApoI	RAATTY	1 cut(s)	282
AseI	ATTAAT	1 cut(s)	363
Asp700I	GAANNNNTTC	1 cut(s)	282
AspLEI	GCGC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	1 cut(s)	398
BcoDI	GTCTC	2 cut(s)	250, 251
BfaI	CTAG	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	51
BisI	GCNGC	1 cut(s)	447
BlsI	GCNGC	1 cut(s)	448
BoxI	GACNNNNGTC	1 cut(s)	53
BsaI	GGTCTC	1 cut(s)	250
BsaJI	CCNNGG	2 cut(s)	90, 394
Bse1I	ACTGG	1 cut(s)	17
Bse3DI	GCAATG	1 cut(s)	464
BseDI	CCNNGG	2 cut(s)	90, 394
BseGI	GGATG	2 cut(s)	169, 208
BseMI	GCAATG	1 cut(s)	464
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	17
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	433
BsgI	GTGCAG	1 cut(s)	432
Bsh1236I	CGCG	2 cut(s)	186, 357
BsmAI	GTCTC	2 cut(s)	250, 251
Bso31I	GGTCTC	1 cut(s)	250
Bsp143I	GATC	3 cut(s)	195, 382, 460
BspACI	CCGC	1 cut(s)	242
BspCNI	CTCAG	1 cut(s)	260
BspFNI	CGCG	2 cut(s)	186, 357
BspPI	GGATC	1 cut(s)	455
BspTNI	GGTCTC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	464
BsrI	ACTGG	1 cut(s)	17
BssECI	CCNNGG	2 cut(s)	90, 394
BssMI	GATC	3 cut(s)	195, 382, 460
BssT1I	CCWWGG	2 cut(s)	90, 394
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	1 cut(s)	249
BstDEI	CTNAG	1 cut(s)	247
BstF5I	GGATG	2 cut(s)	169, 208
BstFNI	CGCG	2 cut(s)	186, 357
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	3 cut(s)	198, 385, 463
BstMAI	GTCTC	2 cut(s)	250, 251
BstMBI	GATC	3 cut(s)	195, 382, 460
BstPAI	GACNNNNGTC	1 cut(s)	53
BstSFI	CTRYAG	1 cut(s)	51
BstUI	CGCG	2 cut(s)	186, 357
BstV1I	GCAGC	1 cut(s)	433
BtsCI	GGATG	2 cut(s)	169, 208
CfoI	GCGC	1 cut(s)	186
Csp6I	GTAC	2 cut(s)	39, 118
CviAII	CATG	5 cut(s)	160, 229, 294, 304, 437
CviJI	RGCY	5 cut(s)	29, 137, 144, 157, 408
CviKI_1	RGCY	5 cut(s)	29, 137, 144, 157, 408
CviQI	GTAC	2 cut(s)	39, 118
DdeI	CTNAG	1 cut(s)	247
DpnI	GATC	3 cut(s)	197, 384, 462
DpnII	GATC	3 cut(s)	195, 382, 460
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco130I	CCWWGG	2 cut(s)	90, 394
Eco31I	GGTCTC	1 cut(s)	250
EcoT14I	CCWWGG	2 cut(s)	90, 394
ErhI	CCWWGG	2 cut(s)	90, 394
FaeI	CATG	5 cut(s)	163, 232, 297, 307, 440
FatI	CATG	5 cut(s)	159, 228, 293, 303, 436
Fnu4HI	GCNGC	1 cut(s)	447
FokI	GGATG	2 cut(s)	176, 215
Fsp4HI	GCNGC	1 cut(s)	447
FspBI	CTAG	1 cut(s)	213
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	1 cut(s)	447
HhaI	GCGC	1 cut(s)	186
Hin1II	CATG	5 cut(s)	163, 232, 297, 307, 440
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HinfI	GANTC	2 cut(s)	232, 290
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	2 cut(s)	250, 476
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	1 cut(s)	391
HpyAV	CCTTC	1 cut(s)	292
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	1 cut(s)	449
HpyF3I	CTNAG	1 cut(s)	247
Hsp92II	CATG	5 cut(s)	163, 232, 297, 307, 440
HspAI	GCGC	1 cut(s)	184
Kzo9I	GATC	3 cut(s)	195, 382, 460
LpnPI	CCDG	3 cut(s)	30, 272, 371
Lsp1109I	GCAGC	1 cut(s)	433
MaeI	CTAG	1 cut(s)	213
MalI	GATC	3 cut(s)	197, 384, 462
MboI	GATC	3 cut(s)	195, 382, 460
MboII	GAAGA	4 cut(s)	89, 266, 311, 413
MfeI	CAATTG	1 cut(s)	261
MluCI	AATT	4 cut(s)	126, 261, 282, 364
MluI	ACGCGT	1 cut(s)	355
MnlI	CCTC	4 cut(s)	155, 244, 304, 368
MroXI	GAANNNNTTC	1 cut(s)	282
MseI	TTAA	2 cut(s)	273, 363
MslI	CAYNNNNRTG	1 cut(s)	103
MunI	CAATTG	1 cut(s)	261
MvnI	CGCG	2 cut(s)	186, 357
NdeII	GATC	3 cut(s)	195, 382, 460
NlaIII	CATG	5 cut(s)	163, 232, 297, 307, 440
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	232, 290
PkrI	GCNGC	1 cut(s)	448
PshAI	GACNNNNGTC	1 cut(s)	53
PshBI	ATTAAT	1 cut(s)	363
RsaI	GTAC	2 cut(s)	40, 119
RsaNI	GTAC	2 cut(s)	39, 118
RseI	CAYNNNNRTG	1 cut(s)	103
SaqAI	TTAA	2 cut(s)	273, 363
SatI	GCNGC	1 cut(s)	447
Sau3AI	GATC	3 cut(s)	195, 382, 460
SetI	ASST	2 cut(s)	31, 379
SfcI	CTRYAG	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	103
Sse9I	AATT	4 cut(s)	126, 261, 282, 364
SsiI	CCGC	1 cut(s)	242
SspMI	CTAG	1 cut(s)	213
StyI	CCWWGG	2 cut(s)	90, 394
TaaI	ACNGT	1 cut(s)	52
TaqI	TCGA	2 cut(s)	140, 322
TasI	AATT	4 cut(s)	126, 261, 282, 364
TfiI	GAWTC	2 cut(s)	232, 290
Tru1I	TTAA	2 cut(s)	273, 363
Tru9I	TTAA	2 cut(s)	273, 363
TseI	GCWGC	1 cut(s)	446
TspDTI	ATGAA	4 cut(s)	245, 282, 320, 446
VspI	ATTAAT	1 cut(s)	363
XapI	RAATTY	1 cut(s)	282
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.