Rroxscaffold_3G00225480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000979
Physical Location & Seq
Reverse (-)
8704509 .. 8709155
4647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00225480.1

Sequence Viewer

Length: 399 bp
ATGAAGAAATCGAAGCGAGTGGTGGACGTTTTCACGTTGAACGGAGCTGCTGCCGTTTTCTGGAAATTTTCCGGCCAAACCGTGGCTTCTAGCTTTACACGTGCACATTGGATTGATGCTTTGCTTCATCGTTTTTATGCCAGCAGCTCTAAGATTAGTTGGTTTCATATAGGGAGTAGTGTGACTGCTGACATTAAAGTAGAAAATCATGTGGGATTGGGTTTCAATCCTGCACGGCACCAGCAAGAAAAAAGTTATGAATTATCTCTGATCTTGGTTGTAAGATTAGTAAGTTCTAAGGAACACTCCTCCATTTCTCCTCCTCTGTTTACTCTGCTCTCCTCAAGCGAACCCAAAATTCCTGAAGAGCAACCGCCGGAAACCGTCACAGAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.77

Weight (kDa)

9.35

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 237
AccB7I CCANNNNNTGG 1 cut(s) 82
AciI CCGC 1 cut(s) 374
AcoI YGGCCR 1 cut(s) 73
AcsI RAATTY 2 cut(s) 65, 357
AcuI CTGAAG 1 cut(s) 384
AcvI CACGTG 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 60, 82
AflIII ACRYGT 1 cut(s) 98
AgsI TTSAA 2 cut(s) 40, 226
AluBI AGCT 3 cut(s) 47, 93, 147
AluI AGCT 3 cut(s) 47, 93, 147
Alw21I GWGCWC 1 cut(s) 106
Alw44I GTGCAC 1 cut(s) 102
AoxI GGCC 1 cut(s) 73
ApaLI GTGCAC 1 cut(s) 102
ApeKI GCWGC 3 cut(s) 47, 50, 144
ApoI RAATTY 2 cut(s) 65, 357
BaeGI GKGCMC 1 cut(s) 106
BanI GGYRCC 1 cut(s) 237
BbrPI CACGTG 1 cut(s) 101
Bbv12I GWGCWC 1 cut(s) 106
BbvI GCAGC 3 cut(s) 34, 37, 156
BceAI ACGGC 2 cut(s) 38, 251
BfaI CTAG 1 cut(s) 90
BisI GCNGC 3 cut(s) 48, 51, 145
BlsI GCNGC 3 cut(s) 49, 52, 146
BmiI GGNNCC 1 cut(s) 239
BmsI GCATC 1 cut(s) 106
BpuEI CTTGAG 1 cut(s) 328
BsaAI YACGTR 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 81
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 82
BseDI CCNNGG 1 cut(s) 81
BseLI CCNNNNNNNGG 2 cut(s) 60, 82
BseRI GAGGAG 4 cut(s) 298, 309, 312, 331
BseSI GKGCMC 1 cut(s) 106
BseXI GCAGC 3 cut(s) 34, 37, 156
BsgI GTGCAG 1 cut(s) 216
BshFI GGCC 1 cut(s) 75
BshNI GGYRCC 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 106
BsiSI CCGG 2 cut(s) 72, 377
BslI CCNNNNNNNGG 2 cut(s) 60, 82
BsnI GGCC 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 1 cut(s) 270
BspACI CCGC 1 cut(s) 374
BspANI GGCC 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 239
BspQI GCTCTTC 1 cut(s) 360
BspT107I GGYRCC 1 cut(s) 237
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 1 cut(s) 270
Bst4CI ACNGT 2 cut(s) 82, 385
Bst6I CTCTTC 1 cut(s) 360
BstBAI YACGTR 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 2 cut(s) 150, 297
BstDSI CCRYGG 1 cut(s) 81
BstKTI GATC 1 cut(s) 273
BstMBI GATC 1 cut(s) 270
BstSLI GKGCMC 1 cut(s) 106
BstV1I GCAGC 3 cut(s) 34, 37, 156
BsuRI GGCC 1 cut(s) 75
BtgI CCRYGG 1 cut(s) 81
Cac8I GCNNGC 1 cut(s) 142
CviAII CATG 1 cut(s) 209
CviJI RGCY 5 cut(s) 47, 75, 86, 93, 147
CviKI_1 RGCY 5 cut(s) 47, 75, 86, 93, 147
DdeI CTNAG 2 cut(s) 150, 297
DpnI GATC 1 cut(s) 272
DpnII GATC 1 cut(s) 270
EaeI YGGCCR 1 cut(s) 73
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
Eco57I CTGAAG 1 cut(s) 384
Eco72I CACGTG 1 cut(s) 101
FaeI CATG 1 cut(s) 212
FaiI YATR 5 cut(s) 138, 168, 170, 210, 258
FatI CATG 1 cut(s) 208
Fnu4HI GCNGC 3 cut(s) 48, 51, 145
Fsp4HI GCNGC 3 cut(s) 48, 51, 145
FspBI CTAG 1 cut(s) 90
GluI GCNGC 3 cut(s) 48, 51, 145
HaeIII GGCC 1 cut(s) 75
HapII CCGG 2 cut(s) 72, 377
Hin1II CATG 1 cut(s) 212
HpaII CCGG 2 cut(s) 72, 377
Hpy166II GTNNAC 3 cut(s) 25, 104, 330
Hpy188I TCNGA 1 cut(s) 270
Hpy188III TCNNGA 2 cut(s) 61, 362
Hpy8I GTNNAC 3 cut(s) 25, 104, 330
HpyCH4III ACNGT 2 cut(s) 82, 385
HpyCH4IV ACGT 3 cut(s) 27, 35, 100
HpyCH4V TGCA 2 cut(s) 104, 233
HpyF3I CTNAG 2 cut(s) 150, 297
HpySE526I ACGT 3 cut(s) 27, 35, 100
Hsp92II CATG 1 cut(s) 212
Kzo9I GATC 1 cut(s) 270
LguI GCTCTTC 1 cut(s) 360
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 7 cut(s) 46, 85, 154, 243, 254, 375, 390
Lsp1109I GCAGC 3 cut(s) 34, 37, 156
LweI GCATC 1 cut(s) 106
MaeI CTAG 1 cut(s) 90
MaeII ACGT 3 cut(s) 27, 35, 100
MaeIII GTNAC 2 cut(s) 181, 385
MalI GATC 1 cut(s) 272
MboI GATC 1 cut(s) 270
MboII GAAGA 2 cut(s) 16, 377
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 3 cut(s) 65, 260, 357
MnlI CCTC 5 cut(s) 319, 330, 333, 352, 387
MseI TTAA 1 cut(s) 195
MspI CCGG 2 cut(s) 72, 377
NdeII GATC 1 cut(s) 270
NlaIII CATG 1 cut(s) 212
NlaIV GGNNCC 1 cut(s) 239
NmuCI GTSAC 2 cut(s) 181, 385
PciSI GCTCTTC 1 cut(s) 360
PflMI CCANNNNNTGG 1 cut(s) 82
PkrI GCNGC 3 cut(s) 49, 52, 146
PmaCI CACGTG 1 cut(s) 101
PmlI CACGTG 1 cut(s) 101
Ppu21I YACGTR 1 cut(s) 101
PspCI CACGTG 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 360
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 3 cut(s) 48, 51, 145
Sau3AI GATC 1 cut(s) 270
SduI GDGCHC 1 cut(s) 106
SetI ASST 7 cut(s) 30, 38, 49, 95, 103, 149, 398
SfaNI GCATC 1 cut(s) 106
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
Sse9I AATT 3 cut(s) 65, 260, 357
SsiI CCGC 1 cut(s) 374
SspMI CTAG 1 cut(s) 90
TaaI ACNGT 2 cut(s) 82, 385
TaiI ACGT 3 cut(s) 30, 38, 103
TaqI TCGA 1 cut(s) 11
TasI AATT 3 cut(s) 65, 260, 357
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseFI GTSAC 2 cut(s) 181, 385
TseI GCWGC 3 cut(s) 47, 50, 144
Tsp45I GTSAC 2 cut(s) 181, 385
TspDTI ATGAA 4 cut(s) 17, 116, 155, 273
TspGWI ACGGA 1 cut(s) 57
Van91I CCANNNNNTGG 1 cut(s) 82
VneI GTGCAC 1 cut(s) 102
XapI RAATTY 2 cut(s) 65, 357
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.