RchiOBHm_Chr4g0406361

synthase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
27869486 .. 27870903
1418 bp
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UTR
Exon/CDS
Intron
PRQ37773

Sequence Viewer

Length: 447 bp
ATGGCGTTCTTGGGTTTAAATTGGCGATTGCTTTTGCTCGTATCAGGGGATATTGTTACAAGGGACTCCTTTGAGTGGTTGTTCAATATTCCTGAAATTGTCAAGGCTTCAGAGTCAGGTGGCAGACTCAAAGATGACATGGCTTCTCATAAGTTTGAGCAAAAGAGAGGACATGTCACCTCAGATGTGGAATGCTACATGAAAGAATATGGTGTCACAGAAGAAGAAGCAAAAGTCGCACTGACTAAACAAGTGGATAATGCTTGGAAGGACATAAATAAAGAATTGTTGAGGATTAACACTATTCCAAGGCCCCTCCTATTCCGAGTTCTCAATCTCACACGGGTGATTGAAGTTCTGTACAAGAATGAAGATGGCTATACTCATCCAAGTGGTGTGGTCAAGGGTTTTGTGGCTTCCGTACTGATCAGACCTGTACCAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

148

Amino Acids

16.89

Weight (kDa)

6.84

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_syn_C_2 PF19086 9 - 91 1.9e-19 Terpene synthase family 2, C-terminal metal binding
Terpene_synth_C PF03936 12 - 91 1.4e-24 Terpene synthase family, metal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 3 cut(s) 362, 423, 438
AfiI CCNNNNNNNGG 1 cut(s) 75
AflIII ACRYGT 1 cut(s) 172
AgsI TTSAA 2 cut(s) 85, 353
AleI CACNNNNGTG 1 cut(s) 344
AoxI GGCC 1 cut(s) 311
AspS9I GGNCC 1 cut(s) 312
AsuHPI GGTGA 2 cut(s) 169, 358
BccI CCATC 1 cut(s) 368
BclI TGATCA 1 cut(s) 426
BmgT120I GGNCC 1 cut(s) 312
BmiI GGNNCC 1 cut(s) 314
BsaJI CCNNGG 1 cut(s) 308
Bsc4I CCNNNNNNNGG 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 308
BseGI GGATG 1 cut(s) 385
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 195
BshFI GGCC 1 cut(s) 313
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 77
BsmI GAATGC 1 cut(s) 197
BsnI GGCC 1 cut(s) 313
Bsp1407I TGTACA 1 cut(s) 360
Bsp143I GATC 1 cut(s) 426
BspANI GGCC 1 cut(s) 313
BspCNI CTCAG 1 cut(s) 194
BspLI GGNNCC 1 cut(s) 314
BsrGI TGTACA 1 cut(s) 360
BssECI CCNNGG 1 cut(s) 308
BssMI GATC 1 cut(s) 426
BssT1I CCWWGG 1 cut(s) 308
BstAUI TGTACA 1 cut(s) 360
BstDEI CTNAG 1 cut(s) 181
BstF5I GGATG 1 cut(s) 385
BstKTI GATC 1 cut(s) 429
BstMBI GATC 1 cut(s) 426
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNSI RCATGY 1 cut(s) 176
BsuRI GGCC 1 cut(s) 313
BtsCI GGATG 1 cut(s) 385
BtsIMutI CAGTG 1 cut(s) 239
Cfr13I GGNCC 1 cut(s) 312
Csp6I GTAC 3 cut(s) 361, 422, 437
CspCI CAANNNNNGTGG 2 cut(s) 378, 413
CviAII CATG 3 cut(s) 139, 173, 199
CviJI RGCY 5 cut(s) 107, 143, 313, 378, 416
CviKI_1 RGCY 5 cut(s) 107, 143, 313, 378, 416
CviQI GTAC 3 cut(s) 361, 422, 437
DdeI CTNAG 1 cut(s) 181
DpnI GATC 1 cut(s) 428
DpnII GATC 1 cut(s) 426
DraI TTTAAA 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 308
Eco57I CTGAAG 1 cut(s) 93
EcoO109I RGGNCCY 1 cut(s) 312
EcoT14I CCWWGG 1 cut(s) 308
ErhI CCWWGG 1 cut(s) 308
FaeI CATG 3 cut(s) 142, 176, 202
FaiI YATR 8 cut(s) 140, 150, 174, 200, 210, 275, 381, 445
FaqI GGGAC 1 cut(s) 77
FatI CATG 3 cut(s) 138, 172, 198
FbaI TGATCA 1 cut(s) 426
FokI GGATG 1 cut(s) 372
HaeIII GGCC 1 cut(s) 313
Hin1II CATG 3 cut(s) 142, 176, 202
HinfI GANTC 3 cut(s) 65, 113, 126
HphI GGTGA 2 cut(s) 169, 358
Hpy188I TCNGA 4 cut(s) 112, 184, 326, 431
Hpy188III TCNNGA 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 1 cut(s) 181
Hsp92II CATG 3 cut(s) 142, 176, 202
Ksp22I TGATCA 1 cut(s) 426
Kzo9I GATC 1 cut(s) 426
LpnPI CCDG 3 cut(s) 30, 102, 105
MaeIII GTNAC 3 cut(s) 55, 175, 214
MalI GATC 1 cut(s) 428
MboI GATC 1 cut(s) 426
MboII GAAGA 3 cut(s) 233, 236, 383
MluCI AATT 3 cut(s) 19, 96, 284
MlyI GAGTC 3 cut(s) 59, 120, 122
MnlI CCTC 4 cut(s) 161, 190, 285, 326
MseI TTAA 2 cut(s) 17, 297
MslI CAYNNNNRTG 2 cut(s) 344, 390
Mva1269I GAATGC 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 236
NdeII GATC 1 cut(s) 426
NlaIII CATG 3 cut(s) 142, 176, 202
NlaIV GGNNCC 1 cut(s) 314
NmuCI GTSAC 2 cut(s) 175, 214
NspI RCATGY 1 cut(s) 176
OliI CACNNNNGTG 1 cut(s) 344
PciI ACATGT 1 cut(s) 172
PctI GAATGC 1 cut(s) 197
PleI GAGTC 3 cut(s) 59, 120, 121
PpsI GAGTC 3 cut(s) 59, 120, 121
PscI ACATGT 1 cut(s) 172
PspN4I GGNNCC 1 cut(s) 314
PspPI GGNCC 1 cut(s) 312
RsaI GTAC 3 cut(s) 362, 423, 438
RsaNI GTAC 3 cut(s) 361, 422, 437
RseI CAYNNNNRTG 2 cut(s) 344, 390
SaqAI TTAA 2 cut(s) 17, 297
Sau3AI GATC 1 cut(s) 426
Sau96I GGNCC 1 cut(s) 312
SchI GAGTC 3 cut(s) 59, 120, 122
SetI ASST 3 cut(s) 121, 182, 436
SmiMI CAYNNNNRTG 2 cut(s) 344, 390
Sse9I AATT 3 cut(s) 19, 96, 284
SspI AATATT 1 cut(s) 88
StyI CCWWGG 1 cut(s) 308
TasI AATT 3 cut(s) 19, 96, 284
TatI WGTACW 1 cut(s) 360
Tru1I TTAA 2 cut(s) 17, 297
Tru9I TTAA 2 cut(s) 17, 297
TscAI CASTG 1 cut(s) 246
TseFI GTSAC 2 cut(s) 175, 214
Tsp45I GTSAC 2 cut(s) 175, 214
TspDTI ATGAA 2 cut(s) 215, 384
TspGWI ACGGA 1 cut(s) 409
TspRI CASTG 1 cut(s) 246
XceI RCATGY 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.