Rmu_sc0008056.1_g000001

(-)-alpha-pinene synthase-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008056.1
Physical Location & Seq
Reverse (-)
7926 .. 8703
778 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008056.1_g000001.1.cds

Sequence Viewer

Length: 543 bp
atgaaagttcaggctcgatcatttttcaatgaggcccaatggttgcaagaaggacgcactccgagcatggaagaatatatgagtgttgctacagtttctgttacttacccttttataacaaccatttcattacttggcatgggagatattgtaacgaaggatgtatttgagtggttgttggatgacccgaaaattgttagcgcttccagtatcatttttaggctcatggatgacattgtttccaccaagtttgagaaagagagagggcatgcaccttctagcattgattgctatatgaagcaatatggtgtttcagagcaagagacgattgacgttttcgagaaacaaattgcgaaatcatggaaggatataaatgaggagtttcttaaaccaaccgctatgccaatgccggttcttatgcgtgttctcaatttaacaagagtagtggatcttctttacaagggagaagatggattcacacgagttgggaagatgaccaaagatagtgttgttgcagttattatcgactcagtgccactgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

180

Amino Acids

20.46

Weight (kDa)

4.9

Isoelectric Point (pI)

42.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 116
AciI CCGC 1 cut(s) 396
AclWI GGATC 1 cut(s) 456
AfeI AGCGCT 1 cut(s) 202
AgsI TTSAA 1 cut(s) 28
Alw26I GTCTC 1 cut(s) 317
AlwI GGATC 1 cut(s) 456
AlwNI CAGNNNCTG 1 cut(s) 98
Aor51HI AGCGCT 1 cut(s) 202
AoxI GGCC 1 cut(s) 33
AspLEI GCGC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 34
BarI GAAGNNNNNNTAC 2 cut(s) 435, 467
BauI CACGAG 1 cut(s) 480
BccI CCATC 1 cut(s) 464
BcoDI GTCTC 1 cut(s) 317
BfaI CTAG 1 cut(s) 279
BfmI CTRYAG 1 cut(s) 90
BfoI RGCGCY 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 34
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bse118I RCCGGY 1 cut(s) 409
Bse1I ACTGG 1 cut(s) 207
BseGI GGATG 3 cut(s) 166, 187, 235
BseMII CTCAG 1 cut(s) 543
BseNI ACTGG 1 cut(s) 207
BseRI GAGGAG 1 cut(s) 392
BshFI GGCC 1 cut(s) 35
BsiSI CCGG 1 cut(s) 410
BsmAI GTCTC 1 cut(s) 317
BsmBI CGTCTC 1 cut(s) 317
BsnI GGCC 1 cut(s) 35
Bsp143I GATC 2 cut(s) 17, 448
BspACI CCGC 1 cut(s) 396
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 1 cut(s) 542
BspPI GGATC 1 cut(s) 456
BsrFI RCCGGY 1 cut(s) 409
BsrI ACTGG 1 cut(s) 207
BssAI RCCGGY 1 cut(s) 409
BssMI GATC 2 cut(s) 17, 448
BssSI CACGAG 1 cut(s) 480
Bst2BI CACGAG 1 cut(s) 480
Bst4CI ACNGT 2 cut(s) 94, 540
BstAPI GCANNNNNTGC 1 cut(s) 288
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 1 cut(s) 529
BstF5I GGATG 3 cut(s) 166, 187, 235
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 2 cut(s) 20, 451
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 2 cut(s) 17, 448
BstMWI GCNNNNNNNGC 2 cut(s) 63, 288
BstNSI RCATGY 1 cut(s) 272
BstSFI CTRYAG 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
BsuRI GGCC 1 cut(s) 35
BtsCI GGATG 3 cut(s) 166, 187, 235
BtsIMutI CAGTG 2 cut(s) 536, 537
Cac8I GCNNGC 1 cut(s) 270
CaiI CAGNNNCTG 1 cut(s) 98
CfoI GCGC 1 cut(s) 203
Cfr10I RCCGGY 1 cut(s) 409
Cfr13I GGNCC 1 cut(s) 34
CseI GACGC 1 cut(s) 63
CspCI CAANNNNNGTGG 4 cut(s) 232, 267, 426, 461
CviAII CATG 5 cut(s) 67, 139, 226, 269, 360
CviJI RGCY 3 cut(s) 14, 35, 223
CviKI_1 RGCY 3 cut(s) 14, 35, 223
DdeI CTNAG 1 cut(s) 529
DpnI GATC 2 cut(s) 19, 450
DpnII GATC 2 cut(s) 17, 448
Eco47III AGCGCT 1 cut(s) 202
Esp3I CGTCTC 1 cut(s) 317
FaeI CATG 5 cut(s) 70, 142, 229, 272, 363
FatI CATG 5 cut(s) 66, 138, 225, 268, 359
FokI GGATG 3 cut(s) 173, 194, 242
FspBI CTAG 1 cut(s) 279
GlaI GCGC 1 cut(s) 202
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 1 cut(s) 35
HapII CCGG 1 cut(s) 410
HgaI GACGC 1 cut(s) 63
HhaI GCGC 1 cut(s) 203
Hin1II CATG 5 cut(s) 70, 142, 229, 272, 363
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HinfI GANTC 2 cut(s) 474, 527
HpaII CCGG 1 cut(s) 410
Hpy188I TCNGA 2 cut(s) 63, 316
Hpy188III TCNNGA 1 cut(s) 340
HpyAV CCTTC 4 cut(s) 44, 151, 285, 358
HpyCH4III ACNGT 2 cut(s) 94, 540
HpyCH4IV ACGT 1 cut(s) 333
HpyCH4V TGCA 3 cut(s) 46, 272, 515
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 288
HpyF3I CTNAG 1 cut(s) 529
HpySE526I ACGT 1 cut(s) 333
Hsp92II CATG 5 cut(s) 70, 142, 229, 272, 363
HspAI GCGC 1 cut(s) 201
Kzo9I GATC 2 cut(s) 17, 448
LpnPI CCDG 2 cut(s) 220, 423
MaeI CTAG 1 cut(s) 279
MaeII ACGT 1 cut(s) 333
MaeIII GTNAC 2 cut(s) 100, 151
MalI GATC 2 cut(s) 19, 450
MboI GATC 2 cut(s) 17, 448
MboII GAAGA 4 cut(s) 83, 443, 479, 502
MflI RGATCY 1 cut(s) 448
MluCI AATT 3 cut(s) 192, 348, 430
MlyI GAGTC 1 cut(s) 521
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 3 cut(s) 25, 257, 370
MseI TTAA 2 cut(s) 387, 434
MspI CCGG 1 cut(s) 410
MwoI GCNNNNNNNGC 2 cut(s) 63, 288
NdeII GATC 2 cut(s) 17, 448
NlaIII CATG 5 cut(s) 70, 142, 229, 272, 363
NspI RCATGY 1 cut(s) 272
PaeI GCATGC 1 cut(s) 272
PfeI GAWTC 1 cut(s) 474
PleI GAGTC 1 cut(s) 521
PpsI GAGTC 1 cut(s) 521
PsiI TTATAA 1 cut(s) 116
PspPI GGNCC 1 cut(s) 34
PstNI CAGNNNCTG 1 cut(s) 98
PsuI RGATCY 1 cut(s) 448
SaqAI TTAA 2 cut(s) 387, 434
Sau3AI GATC 2 cut(s) 17, 448
Sau96I GGNCC 1 cut(s) 34
SchI GAGTC 1 cut(s) 521
SetI ASST 2 cut(s) 277, 336
SfcI CTRYAG 1 cut(s) 90
SphI GCATGC 1 cut(s) 272
Sse9I AATT 3 cut(s) 192, 348, 430
SsiI CCGC 1 cut(s) 396
SspMI CTAG 1 cut(s) 279
TaaI ACNGT 2 cut(s) 94, 540
TaiI ACGT 1 cut(s) 336
TaqI TCGA 3 cut(s) 16, 339, 525
TasI AATT 3 cut(s) 192, 348, 430
TfiI GAWTC 1 cut(s) 474
Tru1I TTAA 2 cut(s) 387, 434
Tru9I TTAA 2 cut(s) 387, 434
TscAI CASTG 2 cut(s) 537, 543
TspDTI ATGAA 3 cut(s) 17, 117, 311
TspRI CASTG 2 cut(s) 537, 543
XceI RCATGY 1 cut(s) 272
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.