RLG00000014166

(-)-alpha-pinene synthase-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
48498720 .. 48499291
572 bp
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UTR
Exon/CDS
Intron
RLM00000014166

Sequence Viewer

Length: 474 bp
ATGGAGGAGTATATGAGTGTTGCTACAGTTTCCATTAGTTACACTTTTCTAACAACCATTTCATTACTTGGCATGGGAGATATTGTAACAAAGGATGCATTTGAGTGGTTGTTGGATGACCCAAAAATTGTTAGAGCTTCCAATATCATTTTTAGGCTCATGGATGACATTGTTTCCAACAAGTTTGAGAAAGAGAGAGGGCATGCACCTTCTAGCATTGATTGCTATATGAAGCAATATGGTGTTTCAGAGCAAGAGACAATTGAAGTTTTTGAGAAACAAATTGTAAAATCATGGAAAGATATAAATGAGTTTCTTAAACCAACCGCTGTGCCAATGCCAGTTCTTAGGCGTGTTCTCAATTTAATAAGAGTAGTGGATCTTCTTTACAAGAGAGAAGATGGATTCACACGGGTTGGGAAGATGACCAAAGATAGTGTTGCTGCAGTTATTATCGACTCAGTGCCACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

158

Amino Acids

17.94

Weight (kDa)

5.26

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 1 - 101 1.8e-35 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 1 - 101 2.4e-28 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 327
AclWI GGATC 1 cut(s) 387
AgsI TTSAA 1 cut(s) 266
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
Alw26I GTCTC 1 cut(s) 251
AlwI GGATC 1 cut(s) 387
ApeKI GCWGC 1 cut(s) 443
BarI GAAGNNNNNNTAC 2 cut(s) 366, 398
BbvI GCAGC 1 cut(s) 430
BccI CCATC 1 cut(s) 395
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 2 cut(s) 24, 444
BisI GCNGC 1 cut(s) 444
BlsI GCNGC 1 cut(s) 445
BmsI GCATC 1 cut(s) 85
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bse1I ACTGG 1 cut(s) 341
BseGI GGATG 3 cut(s) 100, 121, 169
BseMII CTCAG 1 cut(s) 474
BseNI ACTGG 1 cut(s) 341
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 430
BsmAI GTCTC 1 cut(s) 251
Bsp143I GATC 1 cut(s) 379
BspACI CCGC 1 cut(s) 327
BspCNI CTCAG 1 cut(s) 473
BspMAI CTGCAG 1 cut(s) 448
BspPI GGATC 1 cut(s) 387
BsrI ACTGG 1 cut(s) 341
BssMI GATC 1 cut(s) 379
Bst4CI ACNGT 1 cut(s) 28
BstAPI GCANNNNNTGC 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 2 cut(s) 347, 460
BstF5I GGATG 3 cut(s) 100, 121, 169
BstKTI GATC 1 cut(s) 382
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 1 cut(s) 379
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstNSI RCATGY 1 cut(s) 206
BstSFI CTRYAG 2 cut(s) 24, 444
BstV1I GCAGC 1 cut(s) 430
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
BtsCI GGATG 3 cut(s) 100, 121, 169
BtsIMutI CAGTG 1 cut(s) 468
Cac8I GCNNGC 1 cut(s) 204
CviAII CATG 4 cut(s) 73, 160, 203, 294
CviJI RGCY 2 cut(s) 137, 157
CviKI_1 RGCY 2 cut(s) 137, 157
DdeI CTNAG 2 cut(s) 347, 460
DpnI GATC 1 cut(s) 381
DpnII GATC 1 cut(s) 379
EcoT22I ATGCAT 1 cut(s) 100
FaeI CATG 4 cut(s) 76, 163, 206, 297
FatI CATG 4 cut(s) 72, 159, 202, 293
Fnu4HI GCNGC 1 cut(s) 444
FokI GGATG 3 cut(s) 107, 128, 176
Fsp4HI GCNGC 1 cut(s) 444
FspBI CTAG 1 cut(s) 213
GluI GCNGC 1 cut(s) 444
Hin1II CATG 4 cut(s) 76, 163, 206, 297
HinfI GANTC 2 cut(s) 405, 458
Hpy188I TCNGA 1 cut(s) 250
HpyAV CCTTC 1 cut(s) 219
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4V TGCA 3 cut(s) 98, 206, 446
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
HpyF3I CTNAG 2 cut(s) 347, 460
Hsp92II CATG 4 cut(s) 76, 163, 206, 297
Kzo9I GATC 1 cut(s) 379
LpnPI CCDG 1 cut(s) 354
Lsp1109I GCAGC 1 cut(s) 430
LweI GCATC 1 cut(s) 85
MaeI CTAG 1 cut(s) 213
MaeIII GTNAC 2 cut(s) 38, 85
MalI GATC 1 cut(s) 381
MboI GATC 1 cut(s) 379
MboII GAAGA 3 cut(s) 374, 410, 433
MfeI CAATTG 1 cut(s) 261
MflI RGATCY 1 cut(s) 379
MluCI AATT 4 cut(s) 126, 261, 282, 361
MlyI GAGTC 1 cut(s) 452
MmeI TCCRAC 2 cut(s) 93, 201
MnlI CCTC 1 cut(s) 191
Mph1103I ATGCAT 1 cut(s) 100
MseI TTAA 2 cut(s) 318, 365
MslI CAYNNNNRTG 1 cut(s) 103
MspA1I CMGCKG 1 cut(s) 329
MunI CAATTG 1 cut(s) 261
MwoI GCNNNNNNNGC 1 cut(s) 222
NdeII GATC 1 cut(s) 379
NlaIII CATG 4 cut(s) 76, 163, 206, 297
NsiI ATGCAT 1 cut(s) 100
NspI RCATGY 1 cut(s) 206
PaeI GCATGC 1 cut(s) 206
PfeI GAWTC 1 cut(s) 405
PkrI GCNGC 1 cut(s) 445
PleI GAGTC 1 cut(s) 452
PpsI GAGTC 1 cut(s) 452
PstI CTGCAG 1 cut(s) 448
PsuI RGATCY 1 cut(s) 379
RseI CAYNNNNRTG 1 cut(s) 103
SaqAI TTAA 2 cut(s) 318, 365
SatI GCNGC 1 cut(s) 444
Sau3AI GATC 1 cut(s) 379
SchI GAGTC 1 cut(s) 452
SetI ASST 2 cut(s) 139, 211
SfaNI GCATC 1 cut(s) 85
SfcI CTRYAG 2 cut(s) 24, 444
SmiMI CAYNNNNRTG 1 cut(s) 103
SphI GCATGC 1 cut(s) 206
Sse9I AATT 4 cut(s) 126, 261, 282, 361
SsiI CCGC 1 cut(s) 327
SspMI CTAG 1 cut(s) 213
TaaI ACNGT 1 cut(s) 28
TaqI TCGA 1 cut(s) 456
TasI AATT 4 cut(s) 126, 261, 282, 361
TfiI GAWTC 1 cut(s) 405
Tru1I TTAA 2 cut(s) 318, 365
Tru9I TTAA 2 cut(s) 318, 365
TscAI CASTG 1 cut(s) 468
TseI GCWGC 1 cut(s) 443
TspDTI ATGAA 2 cut(s) 51, 245
TspRI CASTG 1 cut(s) 468
XceI RCATGY 1 cut(s) 206
XspI CTAG 1 cut(s) 213
Zsp2I ATGCAT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.