Rmu_sc0019563.1_g000001

(-)-germacrene D synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019563.1
OG0000979
Physical Location & Seq
Forward (+)
251 .. 1176
926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019563.1_g000001.1.cds

Sequence Viewer

Length: 321 bp
atgaaagaatatggtgccacagaagaggaagcaataatcgaattgcgtaggaaagtgagtgacgcatggaaggacttaaatgaatcgttcctcctccctaatgttgttccgaggccattgctgactcgaatcattaactttgcatgtgccacggatgttctatacaagtacggagacggttatactactcttcatgatactgtgctcaaggattttgaagattacaaaccagaagatgaggaagacgttggtgagaaaagctgggtgggtcttaagcttaggctgcttgggaatgggatcgggttccgccacctcttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

106

Amino Acids

12.24

Weight (kDa)

4.88

Isoelectric Point (pI)

36.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 14
AciI CCGC 1 cut(s) 307
AclWI GGATC 1 cut(s) 305
AfaI GTAC 1 cut(s) 170
AflII CTTAAG 1 cut(s) 272
AgsI TTSAA 1 cut(s) 218
AluBI AGCT 2 cut(s) 261, 277
AluI AGCT 2 cut(s) 261, 277
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 1 cut(s) 168
AlwI GGATC 1 cut(s) 305
AoxI GGCC 1 cut(s) 113
ApeKI GCWGC 1 cut(s) 283
AsuHPI GGTGA 1 cut(s) 263
BanI GGYRCC 1 cut(s) 14
BbsI GAAGAC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 270
BcgI CGANNNNNNTGC 2 cut(s) 100, 134
BcoDI GTCTC 1 cut(s) 168
BfrI CTTAAG 1 cut(s) 272
BisI GCNGC 1 cut(s) 284
BlsI GCNGC 1 cut(s) 285
BmiI GGNNCC 2 cut(s) 16, 305
BpiI GAAGAC 1 cut(s) 249
Bpu10I CCTNAGC 1 cut(s) 278
BpuEI CTTGAG 1 cut(s) 191
BsaJI CCNNGG 2 cut(s) 110, 150
Bse3DI GCAATG 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 110, 150
BseGI GGATG 1 cut(s) 160
BseMI GCAATG 1 cut(s) 116
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 1 cut(s) 270
BseYI CCCAGC 1 cut(s) 261
BshFI GGCC 1 cut(s) 115
BshNI GGYRCC 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 207
BsmAI GTCTC 1 cut(s) 168
BsmBI CGTCTC 1 cut(s) 168
BsnI GGCC 1 cut(s) 115
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 1 cut(s) 297
BspACI CCGC 1 cut(s) 307
BspANI GGCC 1 cut(s) 115
BspHI TCATGA 1 cut(s) 193
BspLI GGNNCC 2 cut(s) 16, 305
BspPI GGATC 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 14
BspTI CTTAAG 1 cut(s) 272
BsrDI GCAATG 1 cut(s) 116
BssECI CCNNGG 2 cut(s) 110, 150
BssMI GATC 1 cut(s) 297
Bst4CI ACNGT 2 cut(s) 179, 202
Bst6I CTCTTC 2 cut(s) 18, 195
BstAFI CTTAAG 1 cut(s) 272
BstDEI CTNAG 1 cut(s) 278
BstDSI CCRYGG 1 cut(s) 150
BstF5I GGATG 1 cut(s) 160
BstKTI GATC 1 cut(s) 300
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 1 cut(s) 297
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstNSI RCATGY 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 270
BstV2I GAAGAC 1 cut(s) 249
BsuRI GGCC 1 cut(s) 115
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 1 cut(s) 160
CciI TCATGA 1 cut(s) 193
CseI GACGC 1 cut(s) 71
Csp6I GTAC 1 cut(s) 169
CviAII CATG 3 cut(s) 66, 144, 194
CviJI RGCY 4 cut(s) 115, 261, 277, 283
CviKI_1 RGCY 4 cut(s) 115, 261, 277, 283
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 1 cut(s) 278
DpnI GATC 1 cut(s) 299
DpnII GATC 1 cut(s) 297
Eam1104I CTCTTC 2 cut(s) 18, 195
EarI CTCTTC 2 cut(s) 18, 195
EciI GGCGGA 1 cut(s) 296
Esp3I CGTCTC 1 cut(s) 168
FaeI CATG 3 cut(s) 69, 147, 197
FaiI YATR 6 cut(s) 12, 67, 145, 163, 183, 195
FatI CATG 3 cut(s) 65, 143, 193
Fnu4HI GCNGC 1 cut(s) 284
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 284
GluI GCNGC 1 cut(s) 284
GsaI CCCAGC 1 cut(s) 265
HaeIII GGCC 1 cut(s) 115
HgaI GACGC 1 cut(s) 71
Hin1II CATG 3 cut(s) 69, 147, 197
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 3 cut(s) 83, 124, 129
HphI GGTGA 1 cut(s) 263
Hpy188I TCNGA 1 cut(s) 111
Hpy188III TCNNGA 1 cut(s) 194
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 2 cut(s) 179, 202
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
HpyF3I CTNAG 1 cut(s) 278
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 3 cut(s) 69, 147, 197
Kzo9I GATC 1 cut(s) 297
LpnPI CCDG 2 cut(s) 243, 247
Lsp1109I GCAGC 1 cut(s) 270
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 1 cut(s) 59
MalI GATC 1 cut(s) 299
MboI GATC 1 cut(s) 297
MboII GAAGA 6 cut(s) 35, 182, 230, 245, 254, 307
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 1 cut(s) 41
MlyI GAGTC 1 cut(s) 118
MnlI CCTC 5 cut(s) 19, 101, 104, 105, 232
MseI TTAA 3 cut(s) 77, 135, 273
MspCI CTTAAG 1 cut(s) 272
MwoI GCNNNNNNNGC 1 cut(s) 283
NdeII GATC 1 cut(s) 297
NlaIII CATG 3 cut(s) 69, 147, 197
NlaIV GGNNCC 2 cut(s) 16, 305
NmuCI GTSAC 1 cut(s) 59
NspI RCATGY 1 cut(s) 147
PagI TCATGA 1 cut(s) 193
PfeI GAWTC 2 cut(s) 83, 129
PkrI GCNGC 1 cut(s) 285
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PspFI CCCAGC 1 cut(s) 261
PspN4I GGNNCC 2 cut(s) 16, 305
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SaqAI TTAA 3 cut(s) 77, 135, 273
SatI GCNGC 1 cut(s) 284
Sau3AI GATC 1 cut(s) 297
SchI GAGTC 1 cut(s) 118
SduI GDGCHC 1 cut(s) 207
SetI ASST 4 cut(s) 249, 263, 279, 315
SmlI CTYRAG 2 cut(s) 206, 272
SmoI CTYRAG 2 cut(s) 206, 272
Sse9I AATT 1 cut(s) 41
SsiI CCGC 1 cut(s) 307
TaaI ACNGT 2 cut(s) 179, 202
TaiI ACGT 1 cut(s) 249
TaqI TCGA 2 cut(s) 39, 127
TasI AATT 1 cut(s) 41
TfiI GAWTC 2 cut(s) 83, 129
Tru1I TTAA 3 cut(s) 77, 135, 273
Tru9I TTAA 3 cut(s) 77, 135, 273
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 1 cut(s) 283
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 3 cut(s) 17, 96, 182
TspGWI ACGGA 2 cut(s) 167, 186
Vha464I CTTAAG 1 cut(s) 272
XceI RCATGY 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.