Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006272.1

Orthogroup ID

OG0000979

Physical Location & Seq

Genomic Coordinates Reverse (-)

48587 .. 49227

Gene Structure 641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006272.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgaaaaatcaagctcgatcatatttcaacgaggcccaatggttgcacgaaggatgcactccaagtattgaggagtatatgagggttgcaacagtttctattagttacacttttctaacaaccatttcattactcggcatgggagatattgtaacgaaggatgcatttgagtggttgttgaatgacccaaaaattgttagagcttccaatatcatctttaggcttatggatgacattgtttccaccaagtttgagaaagagagagagcatgtaccttctagcattgattgctatatgaagcaatatagtgtttcagagcaagagacaattgatattttcaacaaacaaattgtggaatcatggaaggatataaacgaggagtttcttaaaccaaccgccatgccaatatcggttcttatgcgcgttctcaatttaacaagagttgcggatctcctttataagggagaagatggattcacacgggttgggaagatgaccaaagatagtgttgctgcagttattatcgatccagtgccactgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00909 map00909

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

180

Amino Acids

20.65

Weight (kDa)

5.01

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000979)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22161 FvH4_3g32081 FvH4_3g32180 FvH4_5g06450 FvH4_6g19300
malus_domestica	MD12G1162800.v1.1 MD12G1163200.v1.1 MD12G1163600.v1.1
prunus_persica	Prupe.4G194000_v2.0.a1 Prupe.4G194700_v2.0.a1 Prupe.4G198800_v2.0.a1
pyrus_communis	pycom07g03220
rosa_chinensis	RchiOBHm_Chr0c17g0499941 RchiOBHm_Chr1g0326031 RchiOBHm_Chr1g0326301 RchiOBHm_Chr4g0406361 RchiOBHm_Chr6g0274881
rosa_laevigata	RLG00000008723 RLG00000014166 RLG00000033702
rosa_multiflora	Rmu_sc0000149.1_g000030 Rmu_sc0001353.1_g000008 Rmu_sc0006272.1_g000013 Rmu_sc0008056.1_g000001 Rmu_sc0011910.1_g000003 Rmu_sc0019563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044360 Rroxscaffold_2G00123050 Rroxscaffold_2G00127900 Rroxscaffold_2G00128770 Rroxscaffold_3G00225480 Rroxscaffold_3G00235290 Rroxscaffold_4G00317180 Rroxscaffold_4G00320650 Rroxscaffold_4G00320660 Rroxscaffold_6G00393300
rosa_samantha	Rh1BG062100 Rh1CG074300 Rh1DG080600 Rh1DG081600 Rh3BG331000 Rh3CG216000 Rh3CG216300 Rh3CG216700 Rh3DG216700 Rh3DG328000 Rh3DG328300 Rh4CG145600 Rh5CG282500 Rh5DG271000 Rh5DG275500 Rh5DG312500 Rh5DG416000 Rh5DG454000 Rh6BG141200 Rh6BG178000 Rh6BG178100 Rh6BG178200 Rh6CG137600 Rh6CG174100 Rh6CG205100 Rh6CG272400 Rh6DG195900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	459
AccII	CGCG	1 cut(s)	423
AciI	CCGC	2 cut(s)	396, 446
AclWI	GGATC	2 cut(s)	456, 521
AfaI	GTAC	1 cut(s)	273
AfiI	CCNNNNNNNGG	1 cut(s)	460
AgsI	TTSAA	3 cut(s)	28, 181, 340
AluBI	AGCT	2 cut(s)	14, 203
AluI	AGCT	2 cut(s)	14, 203
Alw26I	GTCTC	1 cut(s)	317
AlwI	GGATC	2 cut(s)	456, 521
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	512
AspLEI	GCGC	1 cut(s)	423
AspS9I	GGNCC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	1 cut(s)	464
BcoDI	GTCTC	1 cut(s)	317
BfaI	CTAG	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	513
BisI	GCNGC	1 cut(s)	513
BlsI	GCNGC	1 cut(s)	514
BmgT120I	GGNCC	1 cut(s)	34
BmsI	GCATC	2 cut(s)	44, 151
Bsa29I	ATCGAT	1 cut(s)	525
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bsc4I	CCNNNNNNNGG	1 cut(s)	460
Bse1I	ACTGG	1 cut(s)	530
BseCI	ATCGAT	1 cut(s)	525
BseGI	GGATG	3 cut(s)	59, 166, 235
BseLI	CCNNNNNNNGG	1 cut(s)	460
BseNI	ACTGG	1 cut(s)	530
BseRI	GAGGAG	2 cut(s)	86, 392
BseXI	GCAGC	1 cut(s)	499
Bsh1236I	CGCG	1 cut(s)	423
BshFI	GGCC	1 cut(s)	35
BshVI	ATCGAT	1 cut(s)	525
BslI	CCNNNNNNNGG	1 cut(s)	460
BsmAI	GTCTC	1 cut(s)	317
BsnI	GGCC	1 cut(s)	35
Bsp143I	GATC	3 cut(s)	17, 448, 526
BspACI	CCGC	2 cut(s)	396, 446
BspANI	GGCC	1 cut(s)	35
BspDI	ATCGAT	1 cut(s)	525
BspFNI	CGCG	1 cut(s)	423
BspMAI	CTGCAG	1 cut(s)	517
BspPI	GGATC	2 cut(s)	456, 521
BsrI	ACTGG	1 cut(s)	530
BssMI	GATC	3 cut(s)	17, 448, 526
Bst4CI	ACNGT	2 cut(s)	94, 540
BstAPI	GCANNNNNTGC	1 cut(s)	288
BstENI	CCTNNNNNAGG	1 cut(s)	458
BstF5I	GGATG	3 cut(s)	59, 166, 235
BstFNI	CGCG	1 cut(s)	423
BstHHI	GCGC	1 cut(s)	423
BstKTI	GATC	3 cut(s)	20, 451, 529
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	3 cut(s)	17, 448, 526
BstMWI	GCNNNNNNNGC	1 cut(s)	288
BstNSI	RCATGY	1 cut(s)	272
BstSFI	CTRYAG	1 cut(s)	513
BstUI	CGCG	1 cut(s)	423
BstV1I	GCAGC	1 cut(s)	499
BstX2I	RGATCY	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	448
Bsu15I	ATCGAT	1 cut(s)	525
BsuRI	GGCC	1 cut(s)	35
BsuTUI	ATCGAT	1 cut(s)	525
BtsCI	GGATG	3 cut(s)	59, 166, 235
BtsIMutI	CAGTG	2 cut(s)	536, 537
CfoI	GCGC	1 cut(s)	423
Cfr13I	GGNCC	1 cut(s)	34
ClaI	ATCGAT	1 cut(s)	525
Csp6I	GTAC	1 cut(s)	272
CspCI	CAANNNNNGTGG	2 cut(s)	232, 267
CviAII	CATG	4 cut(s)	139, 269, 360, 400
CviJI	RGCY	4 cut(s)	14, 35, 203, 223
CviKI_1	RGCY	4 cut(s)	14, 35, 203, 223
CviQI	GTAC	1 cut(s)	272
DpnI	GATC	3 cut(s)	19, 450, 528
DpnII	GATC	3 cut(s)	17, 448, 526
EcoNI	CCTNNNNNAGG	1 cut(s)	458
EcoT22I	ATGCAT	1 cut(s)	166
FaeI	CATG	4 cut(s)	142, 272, 363, 403
FatI	CATG	4 cut(s)	138, 268, 359, 399
Fnu4HI	GCNGC	1 cut(s)	513
FokI	GGATG	3 cut(s)	66, 173, 242
Fsp4HI	GCNGC	1 cut(s)	513
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	1 cut(s)	422
GluI	GCNGC	1 cut(s)	513
HaeIII	GGCC	1 cut(s)	35
HhaI	GCGC	1 cut(s)	423
Hin1II	CATG	4 cut(s)	142, 272, 363, 403
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HinfI	GANTC	2 cut(s)	356, 474
Hpy188I	TCNGA	1 cut(s)	316
HpyAV	CCTTC	4 cut(s)	44, 151, 285, 358
HpyCH4III	ACNGT	2 cut(s)	94, 540
HpyCH4V	TGCA	5 cut(s)	46, 57, 89, 164, 515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	288
Hsp92II	CATG	4 cut(s)	142, 272, 363, 403
HspAI	GCGC	1 cut(s)	421
Kzo9I	GATC	3 cut(s)	17, 448, 526
Lsp1109I	GCAGC	1 cut(s)	499
LweI	GCATC	2 cut(s)	44, 151
MaeI	CTAG	1 cut(s)	279
MaeIII	GTNAC	2 cut(s)	104, 151
MalI	GATC	3 cut(s)	19, 450, 528
MboI	GATC	3 cut(s)	17, 448, 526
MboII	GAAGA	2 cut(s)	479, 502
MfeI	CAATTG	1 cut(s)	327
MflI	RGATCY	1 cut(s)	448
MluCI	AATT	4 cut(s)	192, 327, 348, 430
MnlI	CCTC	4 cut(s)	25, 64, 75, 370
Mph1103I	ATGCAT	1 cut(s)	166
MseI	TTAA	2 cut(s)	387, 434
MslI	CAYNNNNRTG	1 cut(s)	169
MunI	CAATTG	1 cut(s)	327
MvnI	CGCG	1 cut(s)	423
MwoI	GCNNNNNNNGC	1 cut(s)	288
NdeII	GATC	3 cut(s)	17, 448, 526
NlaIII	CATG	4 cut(s)	142, 272, 363, 403
NmeAIII	GCCGAG	1 cut(s)	114
NsiI	ATGCAT	1 cut(s)	166
NspI	RCATGY	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	356, 474
PkrI	GCNGC	1 cut(s)	514
PsiI	TTATAA	1 cut(s)	459
PspPI	GGNCC	1 cut(s)	34
PstI	CTGCAG	1 cut(s)	517
PsuI	RGATCY	1 cut(s)	448
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
RseI	CAYNNNNRTG	1 cut(s)	169
SaqAI	TTAA	2 cut(s)	387, 434
SatI	GCNGC	1 cut(s)	513
Sau3AI	GATC	3 cut(s)	17, 448, 526
Sau96I	GGNCC	1 cut(s)	34
SetI	ASST	3 cut(s)	16, 205, 277
SfaNI	GCATC	2 cut(s)	44, 151
SfcI	CTRYAG	1 cut(s)	513
SmiMI	CAYNNNNRTG	1 cut(s)	169
Sse9I	AATT	4 cut(s)	192, 327, 348, 430
SsiI	CCGC	2 cut(s)	396, 446
SspMI	CTAG	1 cut(s)	279
TaaI	ACNGT	2 cut(s)	94, 540
TaqI	TCGA	2 cut(s)	16, 525
TasI	AATT	4 cut(s)	192, 327, 348, 430
TfiI	GAWTC	2 cut(s)	356, 474
Tru1I	TTAA	2 cut(s)	387, 434
Tru9I	TTAA	2 cut(s)	387, 434
TscAI	CASTG	2 cut(s)	537, 543
TseI	GCWGC	1 cut(s)	512
TspDTI	ATGAA	3 cut(s)	17, 117, 311
TspRI	CASTG	2 cut(s)	537, 543
XagI	CCTNNNNNAGG	1 cut(s)	458
XceI	RCATGY	1 cut(s)	272
XspI	CTAG	1 cut(s)	279
Zsp2I	ATGCAT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.