Rh1BG062100

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000979
Physical Location & Seq
Reverse (-)
9186215 .. 9186550
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG062100.1

Sequence Viewer

Length: 336 bp
ATGCCATTCTGGCTTACCTTAACCTTCTCTGTTTATATGCAGTTTGAGCAAAAGAGAGAACACATTGCATCAGCCGTGGAATGCTACATGAAGCAATATGGTGTCACAGAAGAAGAAGCAGAGGTCGAGCTAACTAAACAAGTGAATGACGCATGGAAAGACATAAACGAAGAGTGGCTCGATGCCACCTCTATCCCTAGGCCCCTACTCTTGCTGATTTTGAACTTTGCACGTTCTTGTGAAGTTCTATACAAGGGGGAAGATGTGTACACTCATTCTGGAAATGTGCTCAAGCGTCATATAGTTTCTCTCTTTATCGATCCCGTGCCCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

111

Amino Acids

12.98

Weight (kDa)

4.84

Isoelectric Point (pI)

64.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 13 - 54 9.6e-12 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 13 - 54 1.4e-09 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 314
AfaI GTAC 1 cut(s) 269
AgsI TTSAA 1 cut(s) 223
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
Alw21I GWGCWC 1 cut(s) 291
AlwI GGATC 1 cut(s) 314
AoxI GGCC 1 cut(s) 200
AspA2I CCTAGG 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 201
AvrII CCTAGG 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 291
BceAI ACGGC 1 cut(s) 59
BfaI CTAG 1 cut(s) 198
BglI GCCNNNNNGGC 1 cut(s) 10
BlnI CCTAGG 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 201
BmiI GGNNCC 1 cut(s) 203
BmsI GCATC 2 cut(s) 77, 172
BpuEI CTTGAG 1 cut(s) 275
Bsa29I ATCGAT 1 cut(s) 318
BsaJI CCNNGG 2 cut(s) 75, 197
Bse3DI GCAATG 1 cut(s) 63
BseCI ATCGAT 1 cut(s) 318
BseDI CCNNGG 2 cut(s) 75, 197
BseMI GCAATG 1 cut(s) 63
BseSI GKGCMC 1 cut(s) 330
BshFI GGCC 1 cut(s) 202
BshVI ATCGAT 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 291
BsmI GAATGC 1 cut(s) 86
BsnI GGCC 1 cut(s) 202
Bsp1286I GDGCHC 2 cut(s) 291, 330
Bsp1407I TGTACA 1 cut(s) 267
Bsp143I GATC 1 cut(s) 319
BspANI GGCC 1 cut(s) 202
BspDI ATCGAT 1 cut(s) 318
BspLI GGNNCC 1 cut(s) 203
BspPI GGATC 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 63
BsrGI TGTACA 1 cut(s) 267
BssECI CCNNGG 2 cut(s) 75, 197
BssMI GATC 1 cut(s) 319
BssT1I CCWWGG 1 cut(s) 197
Bst6I CTCTTC 1 cut(s) 165
BstAUI TGTACA 1 cut(s) 267
BstDSI CCRYGG 1 cut(s) 75
BstKTI GATC 1 cut(s) 322
BstMBI GATC 1 cut(s) 319
BstMWI GCNNNNNNNGC 2 cut(s) 10, 46
BstSLI GKGCMC 1 cut(s) 330
Bsu15I ATCGAT 1 cut(s) 318
BsuRI GGCC 1 cut(s) 202
BsuTUI ATCGAT 1 cut(s) 318
BtgI CCRYGG 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 201
ClaI ATCGAT 1 cut(s) 318
CseI GACGC 2 cut(s) 158, 284
Csp6I GTAC 1 cut(s) 268
CviAII CATG 2 cut(s) 88, 153
CviJI RGCY 5 cut(s) 13, 74, 130, 178, 202
CviKI_1 RGCY 5 cut(s) 13, 74, 130, 178, 202
CviQI GTAC 1 cut(s) 268
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Eco130I CCWWGG 1 cut(s) 197
EcoO109I RGGNCCY 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 197
ErhI CCWWGG 1 cut(s) 197
FaeI CATG 2 cut(s) 91, 156
FatI CATG 2 cut(s) 87, 152
FspBI CTAG 1 cut(s) 198
HaeIII GGCC 1 cut(s) 202
HgaI GACGC 2 cut(s) 158, 284
Hin1II CATG 2 cut(s) 91, 156
Hpy166II GTNNAC 2 cut(s) 268, 270
Hpy188III TCNNGA 1 cut(s) 279
Hpy8I GTNNAC 2 cut(s) 268, 270
HpyAV CCTTC 1 cut(s) 34
HpyCH4IV ACGT 1 cut(s) 232
HpyCH4V TGCA 3 cut(s) 40, 68, 230
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 46
HpySE526I ACGT 1 cut(s) 232
Hsp92II CATG 2 cut(s) 91, 156
Kzo9I GATC 1 cut(s) 319
LpnPI CCDG 1 cut(s) 264
LweI GCATC 2 cut(s) 77, 172
MaeI CTAG 1 cut(s) 198
MaeII ACGT 1 cut(s) 232
MaeIII GTNAC 1 cut(s) 103
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MboII GAAGA 4 cut(s) 122, 125, 182, 272
MhlI GDGCHC 2 cut(s) 291, 330
MnlI CCTC 2 cut(s) 115, 199
MseI TTAA 1 cut(s) 20
Mva1269I GAATGC 1 cut(s) 86
MwoI GCNNNNNNNGC 2 cut(s) 10, 46
NdeII GATC 1 cut(s) 319
NlaIII CATG 2 cut(s) 91, 156
NlaIV GGNNCC 1 cut(s) 203
NmuCI GTSAC 1 cut(s) 103
PctI GAATGC 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 203
PspPI GGNCC 1 cut(s) 201
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
SaqAI TTAA 1 cut(s) 20
Sau3AI GATC 1 cut(s) 319
Sau96I GGNCC 1 cut(s) 201
SduI GDGCHC 2 cut(s) 291, 330
SetI ASST 6 cut(s) 20, 26, 126, 132, 191, 235
SfaNI GCATC 2 cut(s) 77, 172
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
SspMI CTAG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 197
TaiI ACGT 1 cut(s) 235
TaqI TCGA 3 cut(s) 126, 180, 318
TatI WGTACW 1 cut(s) 267
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TseFI GTSAC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 104
XmaJI CCTAGG 1 cut(s) 197
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.