FvH4_5g06450

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000979
Physical Location & Seq
Forward (+)
3787780 .. 3788298
519 bp
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UTR
Exon/CDS
Intron
FvH4_5g06450.t1

Sequence Viewer

Length: 327 bp
ATGTCGGTGGCGCGTGTTACAGCTGCCATGCAAATGCTGGAAACTACATTCATTTCTGCCATAGCCGGTGACATTGTCACGAAAGCTTCATTGGATTGGTTATTCAGCGACCCTAAAATTGTAAAGGCTTCGCAGATCATTGGGAGAATCTTGGATGACATCCGAAGCCATAAGCCCATCGCTGATGTCCCTAGGCCACTATTGTTGGTGATTTTCAATCTTTTACGCATAACTGATGTGATATACAAGTTTGTGGATGGTTTTACTCATGGAGTTGTGCTTAAGGATTATATTACTTCTGTGCTTGTTGAACCTGTTCCAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

109

Amino Acids

11.96

Weight (kDa)

6.71

Isoelectric Point (pI)

26.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 1 - 58 2.4e-10 Terpene synthase family, metal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 13
AflII CTTAAG 1 cut(s) 281
AgsI TTSAA 2 cut(s) 217, 311
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
AluBI AGCT 2 cut(s) 23, 86
AluI AGCT 2 cut(s) 23, 86
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 23
Asp700I GAANNNNTTC 1 cut(s) 315
AspA2I CCTAGG 1 cut(s) 191
AspLEI GCGC 1 cut(s) 13
AsuHPI GGTGA 2 cut(s) 80, 220
AvrII CCTAGG 1 cut(s) 191
BbvI GCAGC 1 cut(s) 10
BccI CCATC 2 cut(s) 185, 251
BfaI CTAG 1 cut(s) 192
BfrI CTTAAG 1 cut(s) 281
BisI GCNGC 1 cut(s) 24
BlnI CCTAGG 1 cut(s) 191
BlsI GCNGC 1 cut(s) 25
BsaJI CCNNGG 1 cut(s) 191
Bse118I RCCGGY 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 191
BseGI GGATG 3 cut(s) 159, 160, 262
BseXI GCAGC 1 cut(s) 10
Bsh1236I CGCG 1 cut(s) 13
BshFI GGCC 1 cut(s) 196
BsiSI CCGG 1 cut(s) 66
BslFI GGGAC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 1 cut(s) 196
Bsp143I GATC 1 cut(s) 135
BspANI GGCC 1 cut(s) 196
BspFNI CGCG 1 cut(s) 13
BspTI CTTAAG 1 cut(s) 281
BsrFI RCCGGY 1 cut(s) 65
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 191
BstAFI CTTAAG 1 cut(s) 281
BstF5I GGATG 3 cut(s) 159, 160, 262
BstFNI CGCG 1 cut(s) 13
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 1 cut(s) 138
BstMBI GATC 1 cut(s) 135
BstUI CGCG 1 cut(s) 13
BstV1I GCAGC 1 cut(s) 10
BsuRI GGCC 1 cut(s) 196
BtgZI GCGATG 1 cut(s) 163
BtsCI GGATG 3 cut(s) 159, 160, 262
CfoI GCGC 1 cut(s) 13
Cfr10I RCCGGY 1 cut(s) 65
CspCI CAANNNNNGTGG 2 cut(s) 186, 221
CviAII CATG 2 cut(s) 28, 269
CviJI RGCY 7 cut(s) 23, 65, 86, 128, 168, 175, 196
CviKI_1 RGCY 7 cut(s) 23, 65, 86, 128, 168, 175, 196
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
Eco130I CCWWGG 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 191
ErhI CCWWGG 1 cut(s) 191
FaeI CATG 2 cut(s) 31, 272
FaiI YATR 8 cut(s) 29, 62, 171, 230, 244, 270, 291, 325
FaqI GGGAC 1 cut(s) 173
FatI CATG 2 cut(s) 27, 268
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 3 cut(s) 146, 167, 269
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 1 cut(s) 192
GlaI GCGC 1 cut(s) 12
GluI GCNGC 1 cut(s) 24
HaeIII GGCC 1 cut(s) 196
HapII CCGG 1 cut(s) 66
HhaI GCGC 1 cut(s) 13
Hin1II CATG 2 cut(s) 31, 272
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HindIII AAGCTT 1 cut(s) 84
HinfI GANTC 1 cut(s) 147
HpaII CCGG 1 cut(s) 66
HphI GGTGA 2 cut(s) 80, 220
Hpy188I TCNGA 1 cut(s) 164
Hpy188III TCNNGA 1 cut(s) 79
HpyCH4V TGCA 1 cut(s) 31
Hsp92II CATG 2 cut(s) 31, 272
HspAI GCGC 1 cut(s) 11
Kzo9I GATC 1 cut(s) 135
LpnPI CCDG 2 cut(s) 23, 79
Lsp1109I GCAGC 1 cut(s) 10
MaeI CTAG 1 cut(s) 192
MaeIII GTNAC 3 cut(s) 16, 68, 76
MalI GATC 1 cut(s) 137
MboI GATC 1 cut(s) 135
MluCI AATT 1 cut(s) 117
MroXI GAANNNNTTC 1 cut(s) 315
MseI TTAA 1 cut(s) 282
MslI CAYNNNNRTG 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 23
MspCI CTTAAG 1 cut(s) 281
MspI CCGG 1 cut(s) 66
MvnI CGCG 1 cut(s) 13
NdeII GATC 1 cut(s) 135
NlaIII CATG 2 cut(s) 31, 272
NmuCI GTSAC 2 cut(s) 68, 76
PdmI GAANNNNTTC 1 cut(s) 315
PfeI GAWTC 1 cut(s) 147
PflFI GACNNNGTC 1 cut(s) 74
PkrI GCNGC 1 cut(s) 25
PsyI GACNNNGTC 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 32
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 1 cut(s) 135
SetI ASST 3 cut(s) 25, 88, 316
SmiMI CAYNNNNRTG 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 1 cut(s) 117
SspMI CTAG 1 cut(s) 192
StyI CCWWGG 1 cut(s) 191
TasI AATT 1 cut(s) 117
TfiI GAWTC 1 cut(s) 147
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TseFI GTSAC 2 cut(s) 68, 76
TseI GCWGC 1 cut(s) 23
Tsp45I GTSAC 2 cut(s) 68, 76
TspDTI ATGAA 2 cut(s) 40, 78
Tth111I GACNNNGTC 1 cut(s) 74
Vha464I CTTAAG 1 cut(s) 281
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
XmaJI CCTAGG 1 cut(s) 191
XmnI GAANNNNTTC 1 cut(s) 315
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.